Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Gossypium_20arboreum_20[refseq_20GCF_5F000612285.1_202015-09-28] 75,419 sequences; 1,694,597,732 total letters Query= NC_026440.1 Length=2243109 Score E Sequences producing significant alignments: (Bits) Value seq9 316 3e-80 seq1 244 2e-58 >seq9 Length=96604005 Score = 316 bits (350), Expect = 3e-80 Identities = 415/562 (74%), Gaps = 16/562 (3%) Strand=Plus/Plus Query 1455716 GAGCCGCTGCTGCGCGATAACCCGAACCGCTT-TGTCCTGTTCCCCATCCGCTACC-AGC 1455773 ||||| |||||| || ||||| |||| || ||| ||||||| |||| |||| || Sbjct 49335780 GAGCCACTGCTGGCCGCGAACCCAGACCGATTCTGTA-TGTTCCCGATCCAATACCCAGA 49335838 Query 1455774 GGATATGGGAAATGTACCAAAAAGGCCGAGGCCTCCTTTTGGACCGCCGAGGAGGTCGAC 1455833 | |||||||||||||| | |||| |||| || || ||||||||||| ||||| ||||| Sbjct 49335839 AG-TATGGGAAATGTACAAGAAAG-CCGAAGCGTCGTTTTGGACCGCAGAGGAAGTCGAT 49335896 Query 1455834 CTCGGCGCCGA-CACGGTCCACTGGGTGTCGCTGAGCGACGACGAGCGCCATTTCATCAA 1455892 || ||| | ||| |||||| | || | || ||||||| ||| ||||| | Sbjct 49335897 CTGTCTTCCGTTCTTCGTC-ACTGGGAAGCTCTCACCGCTGACGAGCACCACTTCATTAG 49335955 Query 1455893 GCACGTCCTCGCCTTTTTTCGCCGCCAGCGATGGCATCGTGGCCGAGAACCTGGCCGGCC 1455952 ||||| |||||||||||| |||||| ||||||||| || |||||||| || | | Sbjct 49335956 TCACGTTCTCGCCTTTTTT-GCCGCCTCCGATGGCATAGTCCTTGAGAACCTTGCTGTTC 49336014 Query 1455953 GCTTTATGAAAGAGGTCCAATTGCCAGAGGCACGTTTGTTTTACGGGTTCCAGATCGCCA 1456012 | || ||||||||||||||| | | ||||| ||| ||||| || ||||| ||||| | Sbjct 49336015 GGTTCATGAAAGAGGTCCAAATCTCCGAGGCGCGTGCTTTTTATGGTTTCCAAATCGCTA 49336074 Query 1456013 TCGAAAACATCCACTCTGAAACCTACTCGCTCCTGATCGACACCTACGTCAAGGACCCGG 1456072 ||||||| |||||||| || | ||| ||||| |||| || ||| | || || | | Sbjct 49336075 TCGAAAATATCCACTCCGAGATGTACAGTCTCCTTCTCGAGACTTACATAAAAGATTCCG 49336134 Query 1456073 TCGAGAAGGACCACCTCTTTCGCGCCATCGACACGGTGCCGTCGGTGAGGAAAAAGGCCG 1456132 ||| ||| ||| || || ||||||||||| |||||||||| ||| ||||| |||| Sbjct 49336135 ACGAAAAGAACCGTCTTTTCCGCGCCATCGAGACGGTGCCGTGTGTGGCTAAAAAAGCCG 49336194 Query 1456133 ACTGGGCGATGAAGTGGATCAACAAGGAGGGCCTCGACACTTT-GCCGAGCGGCTCGTCG 1456191 | ||||| ||||| |||||| || ||| || ||||| ||||| ||| | ||| Sbjct 49336195 AGTGGGCTATGAAATGGATC------GACGGCGGAGAAACTTTCGCCGAACGGTTAATCG 49336248 Query 1456192 GCTTTGC-CGCGTCGAGGGCATCTTTTTCTCGGGCAGTTTCTGCGCCATCTTTTGGCTCA 1456250 ||||| |||| ||||| ||||||||||| || |||||||| ||||| |||||| | | Sbjct 49336249 CTTTTGCTTGCGTAGAGGGGATCTTTTTCTCCGGAAGTTTCTGTGCCATATTTTGGTTAA 49336308 Query 1456251 AGAAGCGCGGCCTCATGCCCGG 1456272 | ||| | || | |||||||| Sbjct 49336309 AAAAGAGGGGGTTAATGCCCGG 49336330 >seq1 Length=147124936 Score = 244 bits (270), Expect = 2e-58 Identities = 300/406 (74%), Gaps = 9/406 (2%) Strand=Plus/Minus Query 1455869 CGACGACGAGCGCCATTTCATCAAGCACGTCCTCGCCTTTTTTCGCCGCCAGCGATGGCA 1455928 || |||||| ||||| ||||||| || ||||| ||||| || |||||| |||||||| Sbjct 98687733 CGCCGACGAACGCCACTTCATCAGTCATGTCCTTGCCTTCTT-CGCCGCATCCGATGGCA 98687675 Query 1455929 TCGTGGCCGAGAACCTGGCCGGCCGCTTTATGAAAGAGGTCCAATTGCCAGAGGCACGTT 1455988 |||| ||| || || |||| ||||| ||||||||||||||| | ||||||| ||| Sbjct 98687674 TCGTCCTCGAAAATCTCGCCGTTCGCTTCATGAAAGAGGTCCAAATCGCAGAGGCGCGTG 98687615 Query 1455989 TGTTTTACGGGTTCCAGATCGCCATCGAAAACATCCACTCTGAAACCTACTCGCTCCTGA 1456048 |||||| || ||||| ||||||||||| || ||||||||||| | || ||||| Sbjct 98687614 CGTTTTATGGATTCCAAATCGCCATCGAGAATATCCACTCTGAGATGTATAGTCTCCTCC 98687555 Query 1456049 TCGACACCTACGTCAAGGACCCGGTCGAGAAGGACCACCTCTTTCGCGCCATCGACACGG 1456108 |||| || || |||| || | ||| || ||| |||||| | ||| | || |||| Sbjct 98687554 TCGAAACTTATATCAAAGATGCCACCGAAAAAAACCGCCTCTTCCACGCTACTGAAACGG 98687495 Query 1456109 TGCCGTCGGTGAGGAAAAAGGCCGACTGGGCGATGAAGTGGATCAACAAGGAGGGCCTCG 1456168 |||||| ||| ||||| ||||| ||||| | || |||||| || ||| || Sbjct 98687494 TGCCGTGCGTGGCTAAAAAAGCCGATTGGGCTTTCAAATGGATC------GACGGCGGCG 98687441 Query 1456169 ACAC-TTTGCCGAGCGGCTCGTCGGCTTTGC-CGCGTCGAGGGCATCTTTTTCTCGGGCA 1456226 | | |||||||| ||| | ||| || || |||| || ||||| |||||||| |||| Sbjct 98687440 AAGCTTTTGCCGAACGGTTAATCGCTTTCGCTTGCGTAGAAGGCATATTTTTCTCCGGCA 98687381 Query 1456227 GTTTCTGCGCCATCTTTTGGCTCAAGAAGCGCGGCCTCATGCCCGG 1456272 |||||||||| || |||||| | || |||||||| | ||||| || Sbjct 98687380 GTTTCTGCGCGATATTTTGGTTAAAAAAGCGCGGGTTAATGCCTGG 98687335 Score = 93.3 bits (102), Expect = 6e-13 Identities = 94/121 (78%), Gaps = 1/121 (1%) Strand=Plus/Minus Query 1455716 GAGCCGCTGCTGCGCGATAACCCGAACCGCTTTGTCCTGTTCCCCATCCGCTACCAGCGG 1455775 |||||| |||| | |||||| ||||||| | ||||||| |||| |||| | | Sbjct 98688785 GAGCCGTTGCTAGCCTCCAACCCGGACCGCTTCTGCATGTTCCCAATCCAATACCCACAG 98688726 Query 1455776 ATATGGGAAATGTACCAAAAAGGCCGAGGCCTCCTTTTGGACCGCCGAGGAGGTCGACCT 1455835 |||||||||||||| ||| || ||||| ||||| |||||||| |||||||| || || || Sbjct 98688725 ATATGGGAAATGTA-CAAGAAAGCCGAAGCCTCTTTTTGGACTGCCGAGGAAGTTGATCT 98688667 Query 1455836 C 1455836 | Sbjct 98688666 C 98688666 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 7170536898829878