Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Gossypium_20arboreum_20[refseq_20GCF_5F000612285.1_202015-09-28] 75,419 sequences; 1,694,597,732 total letters Query= NC_027213.1 Length=214699 Score E Sequences producing significant alignments: (Bits) Value seq9 150 2e-31 seq1 143 4e-29 seq4 140 4e-28 seq2 138 2e-27 >seq9 Length=96604005 Score = 150 bits (166), Expect = 2e-31 Identities = 556/869 (64%), Gaps = 4/869 (0%) Strand=Plus/Minus Query 39326 TTTTGGTATTCACCAACGCGTTTCTCGAAAAAATTAGTTTTGCCTTCCAATGATATATTT 39385 ||||| || || ||||| | ||||||||| ||||| ||||| |||| ||| ||||| | Sbjct 49336681 TTTTGATACTCTCCAACTCTTTTCTCGAAGAAATTGGTTTTCCCTTGCAACGATATCAGT 49336622 Query 39386 TCCATGAAATCAAACGGATTAGTTGCATTATAtttttttttAAATCCTAATTCTGAAATC 39445 ||||| ||||||| || || | || || | ||| | ||||| || | | Sbjct 49336621 TCCATCCAATCAAATGGGTTGACCACGTTGTACATCTTTCCGTACCCTAACGCTCCCAAC 49336562 Query 39446 AATCTATCTGCAACAAATTCTATGTATGTTTTCATCATTTCACAATTCATTCCTATGAGT 39505 || | ||| || || || || ||||| |||| | || | ||||| || | | Sbjct 49336561 AACCGATCCGCTACGAACTCGATGTACTGACTCATTAACTCGCCGTTCATCCCAACCAAC 49336502 Query 39506 TTAACTGGTAGAGCCTCCGTTAGAAACTCTTTTTCGATGTCTACGGCCTCTGTTATTATC 39565 || ||||| || || ||||| | || ||||| || || || ||| |||| Sbjct 49336501 GCGCAGGGCAGAGCATCGCATACGAACTCCCTCTCTATGTCCACCGCGTCCCTTACTATC 49336442 Query 39566 GATGTTACTACCTCATCACTCGG--TGGATGCAATAAATGTTTAAACATTAAGCAGGCGA 39623 | | || || |||||| | | || | | | || || ||||| |||| Sbjct 49336441 CCTCTCACGCGTTCTTCACTCAGCTTTGACCTGAGGAGAGAGTA--CAGCAAGCAAGCGA 49336384 Query 39624 AGTCACAATGTAGGCCCTCATCTCTACTAATTAATTCGTTAGAAAATGTGAGTCCAGGCA 39683 | ||||| || || || ||||||| ||||| ||||| || || || | ||| |||| Sbjct 49336383 AATCACAGTGGAGACCTTCATCTCGTGAGATTAACTCGTTTGAGAAAGTTAATCCGGGCA 49336324 Query 39684 TTAGACCACGCTTTTTGAGCCAAAATATGGCAGCAAAAGATCCAGAAAAGAAGATGCCTT 39743 ||| || | |||||| | ||||||||||||| ||| ||| || || ||||| || | Sbjct 49336323 TTAACCCCCTCTTTTTTAACCAAAATATGGCACAGAAACTTCCGGAGAAAAAGATCCCCT 49336264 Query 39744 CTACTGCTGCAAATGCAACAAGTCTCTCTCCGTAACTTGTATCATTATGTATCCACTTCT 39803 |||| ||||| || | | | || || || || | | ||||| ||| Sbjct 49336263 CTACGCAAGCAAAAGCGATTAACCGTTCGGCGAAAGTTTCTCCGCCGTCGATCCATTTCA 49336204 Query 39804 GTGCCCAATCAGCTTTCTTCTTTACACAAGGCATTGTTTCTATAGCATTAAAGAGATAAT 39863 ||||| || ||||| || ||||| |||| || || || || || ||| | Sbjct 49336203 TAGCCCACTCGGCTTTTTTAGCCACACACGGCACCGTCTCGATGGCGCGGAAAAGACGGT 49336144 Query 39864 GTTTTTCATCACTATCTTTAACATATGTATCTATTAACAGACTATACATTTCTGAATGGA 39923 ||||| || |||||| | || || || | | ||||| ||||| || || |||| Sbjct 49336143 TCTTTTCGTCGGAATCTTTTATGTAAGTCTCGAGAAGGAGACTGTACATCTCGGAGTGGA 49336084 Query 39924 TGTTTTCAATCGCCATCTGAAATCCGTAAAAACATCTTGCTTCAGTAATTTGTACCTCTG 39983 | ||||| || || || || || || |||||| | || || | ||||| |||||| Sbjct 49336083 TATTTTCGATAGCGATTTGGAAACCATAAAAAGCACGCGCCTCGGAGATTTGGACCTCTT 49336024 Query 39984 AACAAAATCTTTCCGCCAAATTTTCATTCACTATTCCATCACTAGCGGCAAAAAATGCCA 40043 || | | || | || ||| ||||| ||||| ||||||||||| || | Sbjct 49336023 TCATGAACCGAACAGCAAGGTTCTCAAGGACTATGCCATCGGAGGCGGCAAAAAAGGCGA 49335964 Query 40044 ATACATGTTTAATAAAATATTTTTCATCGGGTGTCAATTTATTCCAGTCATTGATATCTT 40103 || || |||| || | | || || | || | | ||||| | | | | Sbjct 49335963 GAACGTGACTAATGAAGTGGTGCTCGTCAGCGGTGAGAGCTTCCCAGTGACGAAGAACGG 49335904 Query 40104 TTGATATATCTACTTCTTCAGCTGTCCAAAACGACGCCTCTGCCTTTTTGTACATGTTCC 40163 || | ||| ||||| || || |||||||||||||| || || || |||||||| | || Sbjct 49335903 AAGACAGATCGACTTCCTCTGCGGTCCAAAACGACGCTTCGGCTTTCTTGTACATTTCCC 49335844 Query 40164 ATATATCACGATATTGTATTGGAAAAATA 40192 ||| || | ||||| || || || ||| Sbjct 49335843 ATACTTCTGGGTATTGGATCGGGAACATA 49335815 >seq1 Length=147124936 Score = 143 bits (158), Expect = 4e-29 Identities = 433/662 (65%), Gaps = 10/662 (2%) Strand=Plus/Plus Query 39326 TTTTGGTATTCACCAACGCGTTTCTCGAAAAAATTAGTTTTGCCTTCCAATGATATATTT 39385 || || || || ||||| | |||||||| ||||| ||||| |||| |||||| || | Sbjct 98686984 TTCTGATACTCTCCAACTCTCTTCTCGAAGAAATTGGTTTTCCCTTGCAATGAAATTAGT 98687043 Query 39386 TCCATGAAATCAAACGGATTAGTTGCATTATAtttttttttAAATCCTAATTCTGAAATC 39445 ||||| ||||||| || |||| ||||| || |||| | | ||||| || | | Sbjct 98687044 TCCATCCAATCAAAAGGGTTAGCCGCATTGTACATTTTGCCATACCCTAAAGCTCCTAAC 98687103 Query 39446 AATCTATCTGCAACAAATTCTATGTATGTTTTCATCATTTCACAATTCATTCCTATGA-- 39503 || | ||| ||||| || || |||||| |||||| |||| |||||| || | | Sbjct 98687104 AACCGATCCGCAACGAACTCAATGTATTGACTCATCAACTCACCATTCATCCCAACTAAC 98687163 Query 39504 GTTTAACTGGTAGAGCCTCCGTTAGAAACTCTTTTTCGATGTCTACGGCCTCTGTTATTA 39563 | || || ||||| || || |||||| | || || | || || || | | || Sbjct 98687164 GCGCAA--GGAAGAGCGTCGCATACAAACTCCCTCTCTATATACACCGCATCACTCACTA 98687221 Query 39564 TCGATGTTACTACCTCATCACTCGG--TGGATGCAATAAATGTTTAAACATTAAGCAGGC 39621 | | || ||| ||||| | | || || | | || || ||||| || Sbjct 98687222 TTCCCTTCACGCGCTCTTCACTTAGCTTTGACTGAAGGAGAGAGTA--CAGCAAGCAAGC 98687279 Query 39622 GAAGTCACAATGTAGGCCCTCATCTCTACTAATTAATTCGTTAGAAAATGTGAGTCCAGG 39681 ||||| ||||| || || ||||||| | || || ||||| || || || | |||||| Sbjct 98687280 AAAGTCGCAATGGAGACCTTCATCTCGAGAGATCAACTCGTTTGAGAAAGTTAATCCAGG 98687339 Query 39682 CATTAGACCACGCTTTTTGAGCCAAAATATGGCAGCA-AAAGATCCAGAAAAGAAGATGC 39740 ||||| || |||||||| | ||||||||| || ||| ||| || || || || |||| Sbjct 98687340 CATTAACCCGCGCTTTTTTAACCAAAATATCGC-GCAGAAACTGCCGGAGAAAAATATGC 98687398 Query 39741 CTTCTACTGCTGCAAATGCAACAAGTCTCTCTCCGTAACTTGTATCATTATGTATCCACT 39800 ||||||| || || || | | | || | || | | | ||||| | Sbjct 98687399 CTTCTACGCAAGCGAAAGCGATTAACCGTTCGGCAAAAGCTTCGCCGCCGTCGATCCATT 98687458 Query 39801 TCTGTGCCCAATCAGCTTTCTTCTTTACACAAGGCATTGTTTCTATAGCATTAAAGAGAT 39860 | |||||||| ||||| || || || |||| ||||| |||| | ||||| Sbjct 98687459 TGAAAGCCCAATCGGCTTTTTTAGCCACGCACGGCACCGTTTCAGTAGCGTGGAAGAGGC 98687518 Query 39861 AATGTTTTTCATCACTATCTTTAACATATGTATCTATTAACAGACTATACATTTCTGAAT 39920 | |||||| |||||| | ||| || || | | ||||||||||| || || | Sbjct 98687519 GGTTTTTTTCGGTGGCATCTTTGATATAAGTTTCGAGGAGGAGACTATACATCTCAGAGT 98687578 Query 39921 GGATGTTTTCAATCGCCATCTGAAATCCGTAAAAACATCTTGCTTCAGTAATTTGTACCT 39980 |||| || || || || || || ||||| ||||| | || || | ||||| |||| Sbjct 98687579 GGATATTCTCGATGGCGATTTGGAATCCATAAAACGCACGCGCCTCTGCGATTTGGACCT 98687638 Query 39981 CT 39982 || Sbjct 98687639 CT 98687640 >seq4 Length=137675496 Score = 140 bits (154), Expect = 4e-28 Identities = 154/205 (75%), Gaps = 0/205 (0%) Strand=Plus/Minus Query 69750 TCCTCCCTGATCTATGTATCTGGCAGTGTTATTATAGACTCTCAGCATCGGAATAATACC 69809 |||||| ||||| | |||| ||||| | ||| | || | |||||| || | ||| || Sbjct 106877165 TCCTCCTTGATCAACATATCGAGCAGTATCATTGAACACCCGCAGCATTGGGACAATTCC 106877106 Query 69810 ATTAGATTTACCATTTGTTCCAGAAATATAACTTCCTCTTGCGCGAATATTACTAATAGA 69869 ||||||| |||||||||||||| ||||||||| ||| | || |||||||| || ||| Sbjct 106877105 ATTAGATGTACCATTTGTTCCACGAATATAACTACCTGTGGCTCGAATATTGTGAACAGA 106877046 Query 69870 TAGACCTATTCCTCCTGCCATTTTAGAGATTAGAGCACAACGTTTCAATGTGTCATATAT 69929 | ||| |||||||| || ||| ||| | |||||| ||||| || |||||||| Sbjct 106877045 AACACCAATTCCTCCAGCTGATTTGCTGATAACAGCACACTCCTTCAAAGTTTCATATAT 106876986 Query 69930 ACCCTCTATGCTATCATCTATCATG 69954 || || || ||||||||| ||||| Sbjct 106876985 TCCTTCAATACTATCATCTTTCATG 106876961 Score = 91.5 bits (100), Expect = 2e-13 Identities = 91/118 (77%), Gaps = 0/118 (0%) Strand=Plus/Minus Query 68734 AACACTCTACGAGTGTAAATATTACTGGTATATGGTTCCACAGATTCATTATTTCCCAGA 68793 || ||||| ||| | |||||||| ||||||||| || | |||||||||| || ||| Sbjct 106879144 AAAACTCTGCGACTATAAATATTGGAGGTATATGGCTCAAAGCATTCATTATTCCCAAGA 106879085 Query 68794 ATTTGAGCAGTTGATGCAGTTGGCATAGGTGCCACCAATAAACTATTTCTAAGACCAT 68851 || ||| |||||| ||||||||||||||||| | ||||| |||||| | |||| Sbjct 106879084 ATCTGACTAGTTGAAGCAGTTGGCATAGGTGCTAACAATAGTGAATTTCTCACTCCAT 106879027 Score = 87.8 bits (96), Expect = 2e-12 Identities = 138/198 (70%), Gaps = 0/198 (0%) Strand=Plus/Minus Query 69990 AGTTCCCGCATTAAATAATGTAGGAGATGCGTGAGTGAACCATTTTTCAGAAAGCAGATT 70049 ||| || ||||| || | || ||||| || |||||||||||| ||| ||| | || | Sbjct 106876822 AGTGCCAGCATTGAAAAGAGTGGGAGAAGCATGAGTGAACCATCTTTGAGACATCATGTG 106876763 Query 70050 GTATGTTTCAATAGCTGATTCTATATCCCACTGATGAATTCCTATCGCGACACGCATCAA 70109 || |||| ||||| || || || || || ||||||||| | || || | ||| || Sbjct 106876762 ATAAGTTTTTATAGCAGAATCAATGTCATCCTTATGAATTCCAACAGCAACCCTCATTAA 106876703 Query 70110 CATATGCTGAGGTCGTTCTACCGTTTTATTATTTATTTTCAACAGGTATGATTTTTCCAG 70169 ||| |||||||| | ||||| || | | |||||| || || || | ||||| Sbjct 106876702 CATGTGCTGAGGCCTTTCTATAACCTTCCCTTGAACTTTCAAGAGATAAGACCTCTCCAG 106876643 Query 70170 AGTTTTAAACCCAAAATA 70187 ||||| || ||||| || Sbjct 106876642 GGTTTTGAAGCCAAAGTA 106876625 >seq2 Length=101023042 Score = 138 bits (152), Expect = 2e-27 Identities = 163/221 (74%), Gaps = 0/221 (0%) Strand=Plus/Plus Query 69751 CCTCCCTGATCTATGTATCTGGCAGTGTTATTATAGACTCTCAGCATCGGAATAATACCA 69810 ||||| ||||| | || | ||||||| ||| | || | |||||| || | ||| ||| Sbjct 61425054 CCTCCTTGATCAACATAACGAGCAGTGTCATTGAACACCCGCAGCATTGGGACAATGCCA 61425113 Query 69811 TTAGATTTACCATTTGTTCCAGAAATATAACTTCCTCTTGCGCGAATATTACTAATAGAT 69870 |||||| |||||||||||||| ||| ||||| | | | || |||||||| || || Sbjct 61425114 TTAGATGTACCATTTGTTCCACGAATGTAACTACTTGTAGCCCGAATATTGTGAACTGAG 61425173 Query 69871 AGACCTATTCCTCCTGCCATTTTAGAGATTAGAGCACAACGTTTCAATGTGTCATATATA 69930 | ||| |||||||| || ||| ||||| |||||| ||||| ||||||||||| Sbjct 61425174 ACACCAATTCCTCCAGCTGATTTGCTGATTATAGCACACTCCTTCAAAGTGTCATATATT 61425233 Query 69931 CCCTCTATGCTATCATCTATCATGTTAAGAAGAAAACAGCT 69971 ||||| || ||||||||| |||| || | ||| ||||| Sbjct 61425234 CCCTCGATACTATCATCTTTCATACACAGTAAAAAGCAGCT 61425274 Score = 95.1 bits (104), Expect = 2e-14 Identities = 115/157 (73%), Gaps = 0/157 (0%) Strand=Plus/Plus Query 68737 ACTCTACGAGTGTAAATATTACTGGTATATGGTTCCACAGATTCATTATTTCCCAGAATT 68796 ||||||||| | || ||||| ||||||||||| | | ||||||||||| ||||| Sbjct 61423094 ACTCTACGACTATAGATATTGGAAGTATATGGTTCAAAGCACTCATTATTTCCAAGAATC 61423153 Query 68797 TGAGCAGTTGATGCAGTTGGCATAGGTGCCACCAATAAACTATTTCTAAGACCATGTGTT 68856 || |||||||||||||||||||||||| | ||| | |||||| | ||||| | Sbjct 61423154 TGGCTAGTTGATGCAGTTGGCATAGGTGCTAACAAAAGTGAATTTCTCACTCCATGCTTA 61423213 Query 68857 ATGATTTTATCTTTTAGATGTTTCCAATCCCAAAGAT 68893 || || ||| | ||| ||||| ||||| |||| Sbjct 61423214 GCTATGTTGTCTCTAAGAGCATTCCAGTCCCACAGAT 61423250 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 686261225315160