Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Gossypium_20arboreum_20[refseq_20GCF_5F000612285.1_202015-09-28] 75,419 sequences; 1,694,597,732 total letters Query= NC_027778.1 Length=124244 Score E Sequences producing significant alignments: (Bits) Value seq9 172 4e-38 seq1 147 2e-30 >seq9 Length=96604005 Score = 172 bits (190), Expect = 4e-38 Identities = 392/583 (67%), Gaps = 10/583 (2%) Strand=Plus/Plus Query 43707 TGTTTCCAATTCAATATCATGACATATGGCAAATGTACAAAAAAGCACAGGCGTCATTTT 43766 |||| || || ||||| | || ||||| |||||||||| ||||| | ||||| |||| Sbjct 49335817 TGTTCCCGATCCAATACCCAGAAGTATGGGAAATGTACAAGAAAGCCGAAGCGTCGTTTT 49335876 Query 43767 GGACAGCAGAAGAAGTTGATTTGACTAAAGA-CTTAGCACATTGGATTGCATTAAAACCA 43825 |||| ||||| ||||| ||| || || | ||| | || ||| || | | | Sbjct 49335877 GGACCGCAGAGGAAGTCGATCTGTCTTCCGTTCTTCGT-CACTGGGAAGCTCTCACCGCT 49335935 Query 43826 CAAGAAAAACATTTTATATCTTTGGTTTTGGCGTTTTTTGCTGCGAGCGACGGGATAGTC 43885 | || | || || || | ||| | || |||||||| || ||| || |||||| Sbjct 49335936 GACGAGCACCACTTCATTAGTCACGTTCTCGCCTTTTTTGCCGCCTCCGATGGCATAGTC 49335995 Query 43886 AATGAAAATTTGGTTAGTCGGTTTGCGCAAGAAGTTCAATTACCAGAAGCACGATGTTTT 43945 ||| || | | | |||||| | |||| || ||| | | || || || |||| Sbjct 49335996 CTTGAGAACCTTGCTGTTCGGTTCATGAAAGAGGTCCAAATCTCCGAGGCGCGTGCTTTT 49336055 Query 43946 TATGGGTTTCAAATTGCCATAGAAAATATTCATTCGGAAATGTACAGTCTTCTGATAGAT 44005 ||||| || ||||| || || |||||||| || || || ||||||||||| || | || Sbjct 49336056 TATGGTTTCCAAATCGCTATCGAAAATATCCACTCCGAGATGTACAGTCTCCTTCTCGAG 49336115 Query 44006 ACGTACATCAAAGATGGGCACGAGAAGCATCGATTGTTTAATGCGATAGAAACAGTACC- 44064 || ||||| |||||| |||| ||| | || | || || || || || || || Sbjct 49336116 ACTTACATAAAAGATTCCGACGAAAAGAACCGTCTTTTCCGCGCCATCGAGACGGTGCCG 49336175 Query 44065 --TGCGATTAAACATAAAGCAGACTGGGCCCTTAAATGGATAAATTCAAATGATTCTTTT 44122 || | |||| ||||| || ||||| | |||||||| | || |||| Sbjct 49336176 TGTGTGGCTAAA---AAAGCCGAGTGGGCTATGAAATGGATCGACGGCGGAGAAACTTTC 49336232 Query 44123 GGAGAACGACTTGTCGCGTTTGCAGTTGTGGAAGGCATTTTCTTTTCAGGATCGTTTGCG 44182 | ||||| | |||| ||||| || || || || || || || ||| |||| | Sbjct 49336233 GCCGAACGGTTAATCGCTTTTGCTTGCGTAGAGGGGATCTTTTTCTCCGGA-AGTTTCTG 49336291 Query 44183 -GCCATATTTTGGTTAAAGAAACGAGGTTTGATGCCTGGGTTGACGTTTTCAAATGAGTT 44241 ||||||||||||||||| || | || || ||||| || || || || ||||| ||||| Sbjct 49336292 TGCCATATTTTGGTTAAAAAAGAGGGGGTTAATGCCCGGATTAACTTTCTCAAACGAGTT 49336351 Query 44242 AATAAGTCGTGATGAAGGCTTACATTGCGATTTTGCTTGCTTG 44284 ||| || |||||||| | || || ||||| ||||||||| Sbjct 49336352 AATCTCACGAGATGAAGGTCTCCACTGTGATTTCGCTTGCTTG 49336394 >seq1 Length=147124936 Score = 147 bits (162), Expect = 2e-30 Identities = 261/375 (70%), Gaps = 8/375 (2%) Strand=Plus/Minus Query 43914 AAGAAGTTCAATTACCAGAAGCACGATGTTTTTATGGGTTTCAAATTGCCATAGAAAATA 43973 |||| || ||| | |||| || || |||||||| || ||||| ||||| || |||| Sbjct 98687641 AAGAGGTCCAAATCGCAGAGGCGCGTGCGTTTTATGGATTCCAAATCGCCATCGAGAATA 98687582 Query 43974 TTCATTCGGAAATGTACAGTCTTCTGATAGATACGTACATCAAAGATGGGCACGAGAAGC 44033 | || || || ||||| ||||| || | || || || |||||||||| ||| || Sbjct 98687581 TCCACTCTGAGATGTATAGTCTCCTCCTCGAAACTTATATCAAAGATGCCACCGAAAAAA 98687522 Query 44034 ATCGATTGTTTAATGCGATAGAAACAGTACC-TGCGAT--TAAACATAAAGCAGACTGGG 44090 | || | || | || | ||||| || || |||| |||| ||||| || |||| Sbjct 98687521 ACCGCCTCTTCCACGCTACTGAAACGGTGCCGTGCGTGGCTAAA---AAAGCCGATTGGG 98687465 Query 44091 CCCTTAAATGGATAAATTCAAATGATTCTTTTGGAGAACGACTTGTCGCGTTTGCAGTTG 44150 | | |||||||| | || |||||| ||||| | |||| || || | Sbjct 98687464 CTTTCAAATGGATCGACGGCGGCGAAGCTTTTGCCGAACGGTTAATCGCTTTCGCTTGCG 98687405 Query 44151 TGGAAGGCATTTTCTTTTCAGGATCGTT-TGCGGCCATATTTTGGTTAAAGAAACGAGGT 44209 | |||||||| || || || || || |||| | |||||||||||||| || || || Sbjct 98687404 TAGAAGGCATATTTTTCTCCGGCAGTTTCTGCG-CGATATTTTGGTTAAAAAAGCGCGGG 98687346 Query 44210 TTGATGCCTGGGTTGACGTTTTCAAATGAGTTAATAAGTCGTGATGAAGGCTTACATTGC 44269 || |||||||| || || || ||||| ||||| || ||| |||||||| | |||||| Sbjct 98687345 TTAATGCCTGGATTAACTTTCTCAAACGAGTTGATCTCTCGAGATGAAGGTCTCCATTGC 98687286 Query 44270 GATTTTGCTTGCTTG 44284 || |||||||||||| Sbjct 98687285 GACTTTGCTTGCTTG 98687271 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 397090670741095