Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Gossypium_20arboreum_20[refseq_20GCF_5F000612285.1_202015-09-28] 75,419 sequences; 1,694,597,732 total letters Query= NC_027923.1 Length=132831 Score E Sequences producing significant alignments: (Bits) Value seq1 104 2e-17 seq7 100 2e-16 seq12 98.7 8e-16 seq11 98.7 8e-16 seq10 98.7 8e-16 seq6 98.7 8e-16 seq9 95.1 1e-14 >seq1 Length=147124936 Score = 104 bits (114), Expect = 2e-17 Identities = 141/197 (72%), Gaps = 0/197 (0%) Strand=Plus/Plus Query 27051 GTAGAGTCTTTTTGAATATTGTAGTCGCTCATGTTGCGCTCGTCTTCGAGCTGTTTACCG 27110 || || || || || || ||||||||| | | |||| ||||||||||||| || ||| Sbjct 22444451 GTGGATTCCTTCTGGATGTTGTAGTCGGCTAAGGTGCGGCCGTCTTCGAGCTGCTTCCCG 22444510 Query 27111 GCGTAAATGAGACGCTGTTGATCCGGCGGCACACCCTCTTTATCGGCGATCTTGTTTTTC 27170 ||| | || || |||||||| || || || | ||||| || || ||||||| || Sbjct 22444511 GCGAAGATAAGGCGCTGTTGGTCGGGTGGGATGCCCTCCTTGTCTTGGATCTTGGCCTTG 22444570 Query 27171 AGGGTTTCTACAGTGTCTGTGGCTTCAACTTCTAGAGTTATAGATTTGCCCGTCAGAGTT 27230 | | | || | || || | || |||||| |||| ||||| | || ||||| || ||| Sbjct 22444571 ACGTTGTCGATTGTATCGGAGGATTCAACCTCTAAGGTTATGGTCTTCCCCGTTAGGGTT 22444630 Query 27231 TTCACAAAGATTTGCAT 27247 || || ||||| ||||| Sbjct 22444631 TTGACGAAGATCTGCAT 22444647 >seq7 Length=127721098 Score = 100 bits (110), Expect = 2e-16 Identities = 151/215 (70%), Gaps = 0/215 (0%) Strand=Plus/Plus Query 27033 CGCAATACCAAATGTAACGTAGAGTCTTTTTGAATATTGTAGTCGCTCATGTTGCGCTCG 27092 ||||| |||||||| | || || || |||||||| || ||||| | | | | | || Sbjct 44509284 CGCAAAACCAAATGCAGGGTCGACTCCTTTTGAATGTTATAGTCCGCAAGGGTCCTCCCG 44509343 Query 27093 TCTTCGAGCTGTTTACCGGCGTAAATGAGACGCTGTTGATCCGGCGGCACACCCTCTTTA 27152 || |||||||| || ||||| |||| | | |||||| || || || | |||||| ||| Sbjct 44509344 TCCTCGAGCTGCTTTCCGGCAAAAATCAACCTCTGTTGGTCAGGTGGGATACCCTCCTTA 44509403 Query 27153 TCGGCGATCTTGTTTTTCAGGGTTTCTACAGTGTCTGTGGCTTCAACTTCTAGAGTTATA 27212 || ||||||| || | | || || ||||| | | || || || | || || Sbjct 44509404 TCTTGGATCTTGGCCTTAACATTATCAACCGTGTCGGAGCTCTCCACCTCCAACGTAATG 44509463 Query 27213 GATTTGCCCGTCAGAGTTTTCACAAAGATTTGCAT 27247 | ||| || |||| |||||||||||| || ||||| Sbjct 44509464 GTTTTACCGGTCAAAGTTTTCACAAATATCTGCAT 44509498 Score = 91.5 bits (100), Expect = 1e-13 Identities = 157/228 (69%), Gaps = 0/228 (0%) Strand=Plus/Minus Query 27021 CCTCCGCGCAACCGCAATACCAAATGTAACGTAGAGTCTTTTTGAATATTGTAGTCGCTC 27080 || || |||| |||||| ||||| || | ||||| || ||||| |||||||||||| | Sbjct 86220614 CCACCACGCAGCCGCAACACCAAGTGAAGGGTAGACTCCTTTTGGATATTGTAGTCGGCC 86220555 Query 27081 ATGTTGCGCTCGTCTTCGAGCTGTTTACCGGCGTAAATGAGACGCTGTTGATCCGGCGGC 27140 | | | | ||||||||||| || || || | ||||| | || || || || || Sbjct 86220554 AATGTCCTACCATCTTCGAGCTGCTTGCCAGCAAAGATGAGCCTTTGCTGGTCTGGGGGG 86220495 Query 27141 ACACCCTCTTTATCGGCGATCTTGTTTTTCAGGGTTTCTACAGTGTCTGTGGCTTCAACT 27200 | |||||| || || |||||| |||| | || | || || | |||||| Sbjct 86220494 ATACCCTCCTTGTCTTGGATCTTTGCCTTCACATTGTCAATGGTATCGGAACTTTCAACC 86220435 Query 27201 TCTAGAGTTATAGATTTGCCCGTCAGAGTTTTCACAAAGATTTGCATA 27248 || | ||| || | || || || ||||| || |||||||| |||||| Sbjct 86220434 TCCAAAGTGATGGTCTTTCCGGTAAGAGTCTTTACAAAGATCTGCATA 86220387 Score = 89.7 bits (98), Expect = 4e-13 Identities = 138/197 (70%), Gaps = 0/197 (0%) Strand=Plus/Plus Query 27051 GTAGAGTCTTTTTGAATATTGTAGTCGCTCATGTTGCGCTCGTCTTCGAGCTGTTTACCG 27110 ||||| ||||||||||| |||||||| | | |||| | ||||| || || |||||| Sbjct 44510214 GTAGACTCTTTTTGAATGTTGTAGTCAGCAAGGGTGCGACCATCTTCCAGTTGCTTACCG 44510273 Query 27111 GCGTAAATGAGACGCTGTTGATCCGGCGGCACACCCTCTTTATCGGCGATCTTGTTTTTC 27170 || | || || | |||||| || || || | || || ||||| |||||| || Sbjct 44510274 GCAAAGATAAGCCTCTGTTGGTCAGGAGGGATCCCTTCCTTATCCTGGATCTTAGCCTTG 44510333 Query 27171 AGGGTTTCTACAGTGTCTGTGGCTTCAACTTCTAGAGTTATAGATTTGCCCGTCAGAGTT 27230 | | || | ||||| | | |||||| || || || || | ||||| || || ||| Sbjct 44510334 ACATTATCAATTGTGTCGGAGCTTTCAACCTCAAGGGTGATTGTCTTGCCAGTGAGGGTT 44510393 Query 27231 TTCACAAAGATTTGCAT 27247 ||||| ||||| ||||| Sbjct 44510394 TTCACGAAGATCTGCAT 44510410 >seq12 Length=146008498 Score = 98.7 bits (108), Expect = 8e-16 Identities = 158/227 (70%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 27021 CCTCCGCGCAACCGCAATACCAAATGTAACGTAGAGTCTTTTTGAATATTGTAGTCGCTC 27080 || || || | || |||||||||||| | || || || || || || ||||| ||| | Sbjct 12766687 CCACCACGAAGCCTCAATACCAAATGGAGGGTGGACTCCTTCTGGATGTTGTAATCGGCC 12766746 Query 27081 ATGTTGCGCTCGTCTTCGAGCTGTTTACCGGCGTAAATGAGACGCTGTTGATCCGGCGGC 27140 | | |||| |||| ||||| ||||| ||||| | ||||| | || || || || || Sbjct 12766747 AAGGTGCGACCGTCCTCGAGTTGTTTCCCGGCAAATATGAGCCTTTGCTGGTCTGGTGGG 12766806 Query 27141 ACACCCTCTTTATCGGCGATCTTGTTTTTCAGGGTTTCTACAGTGTCTGTGGCTTCAACT 27200 | || || || || |||||| || | | | || | ||||| | | ||| ||| Sbjct 12766807 ATGCCTTCCTTGTCTTGGATCTTTGCCTTGACGTTGTCAATGGTGTCAGAGCTTTCGACT 12766866 Query 27201 TCTAGAGTTATAGATTTGCCCGTCAGAGTTTTCACAAAGATTTGCAT 27247 || | |||||| | ||||| ||||| ||||| || ||||| ||||| Sbjct 12766867 TCCAAAGTTATGGTCTTGCCGGTCAGGGTTTTGACGAAGATCTGCAT 12766913 >seq11 Length=105699404 Score = 98.7 bits (108), Expect = 8e-16 Identities = 116/157 (74%), Gaps = 0/157 (0%) Strand=Plus/Minus Query 27091 CGTCTTCGAGCTGTTTACCGGCGTAAATGAGACGCTGTTGATCCGGCGGCACACCCTCTT 27150 |||||||||||||||| || ||| ||||||||||||| || || || || | || || | Sbjct 76982504 CGTCTTCGAGCTGTTTGCCAGCGAAAATGAGACGCTGCTGGTCGGGTGGGATCCCTTCCT 76982445 Query 27151 TATCGGCGATCTTGTTTTTCAGGGTTTCTACAGTGTCTGTGGCTTCAACTTCTAGAGTTA 27210 | || ||||||| || | | | || | ||||| | | ||| || || || |||| Sbjct 76982444 TGTCTTGGATCTTGGCCTTGACGTTGTCGATGGTGTCGGAGCTTTCGACCTCGAGTGTTA 76982385 Query 27211 TAGATTTGCCCGTCAGAGTTTTCACAAAGATTTGCAT 27247 | | ||||| || || |||||||||||||| ||||| Sbjct 76982384 TGGTCTTGCCGGTAAGGGTTTTCACAAAGATCTGCAT 76982348 >seq10 Length=114683840 Score = 98.7 bits (108), Expect = 8e-16 Identities = 158/227 (70%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 27021 CCTCCGCGCAACCGCAATACCAAATGTAACGTAGAGTCTTTTTGAATATTGTAGTCGCTC 27080 || || ||||| || | || | || | ||| || || || || || ||||||||| | Sbjct 64671228 CCGCCACGCAAACGAAGGACAAGGTGGAGCGTTGACTCCTTCTGGATGTTGTAGTCGGCC 64671287 Query 27081 ATGTTGCGCTCGTCTTCGAGCTGTTTACCGGCGTAAATGAGACGCTGTTGATCCGGCGGC 27140 | | | || |||||||||| ||||| |||||| | |||||||| || || || || || Sbjct 64671288 AAGGTACGGCCGTCTTCGAGTTGTTTTCCGGCGAAGATGAGACGTTGCTGGTCTGGGGGG 64671347 Query 27141 ACACCCTCTTTATCGGCGATCTTGTTTTTCAGGGTTTCTACAGTGTCTGTGGCTTCAACT 27200 | || || || || |||||| || | | | || | ||||| | | || || Sbjct 64671348 ATGCCTTCCTTGTCTTGGATCTTCGCCTTAACGTTGTCGATCGTGTCGGAGCTCTCGACC 64671407 Query 27201 TCTAGAGTTATAGATTTGCCCGTCAGAGTTTTCACAAAGATTTGCAT 27247 || ||||| || | ||||| |||| |||||||| ||||||||||| Sbjct 64671408 TCGAGAGTGATTGTCTTGCCGGTCAAGGTTTTCACGAAGATTTGCAT 64671454 Score = 89.7 bits (98), Expect = 4e-13 Identities = 156/227 (69%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 27021 CCTCCGCGCAACCGCAATACCAAATGTAACGTAGAGTCTTTTTGAATATTGTAGTCGCTC 27080 ||||| || | ||||| |||||||| | || || || ||||| || || || || Sbjct 38467134 CCTCCTCGAAGTCGCAAAACCAAATGCAGGGTCGATTCCTTTTGGATGTTATAATCCGCA 38467075 Query 27081 ATGTTGCGCTCGTCTTCGAGCTGTTTACCGGCGTAAATGAGACGCTGTTGATCCGGCGGC 27140 | | | | | | || |||||||| || || || |||| | | ||| || || || || Sbjct 38467074 AGGGTCCTCCCATCCTCGAGCTGCTTTCCAGCAAAAATCAACCTCTGCTGGTCAGGTGGG 38467015 Query 27141 ACACCCTCTTTATCGGCGATCTTGTTTTTCAGGGTTTCTACAGTGTCTGTGGCTTCAACT 27200 | |||||| ||||| ||||||| |||| | || | ||||||| | || || Sbjct 38467014 ATACCCTCCTTATCTTGGATCTTGGCCTTCACATTATCAATTGTGTCTGAGCTCTCCACC 38466955 Query 27201 TCTAGAGTTATAGATTTGCCCGTCAGAGTTTTCACAAAGATTTGCAT 27247 || | || |||| ||| || |||| |||||||||||| || ||||| Sbjct 38466954 TCCAATGTGATAGTTTTTCCAGTCAAAGTTTTCACAAAAATCTGCAT 38466908 Score = 89.7 bits (98), Expect = 4e-13 Identities = 156/227 (69%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 27021 CCTCCGCGCAACCGCAATACCAAATGTAACGTAGAGTCTTTTTGAATATTGTAGTCGCTC 27080 ||||| || | ||||| |||||||| | || || || ||||| || || || || Sbjct 38472846 CCTCCTCGAAGTCGCAAAACCAAATGCAGGGTCGATTCCTTTTGGATGTTATAATCCGCA 38472787 Query 27081 ATGTTGCGCTCGTCTTCGAGCTGTTTACCGGCGTAAATGAGACGCTGTTGATCCGGCGGC 27140 | | | | | | || |||||||| || || || |||| | | ||| || || || || Sbjct 38472786 AGGGTCCTCCCATCCTCGAGCTGCTTTCCAGCAAAAATCAACCTCTGCTGGTCAGGTGGG 38472727 Query 27141 ACACCCTCTTTATCGGCGATCTTGTTTTTCAGGGTTTCTACAGTGTCTGTGGCTTCAACT 27200 | |||||| ||||| ||||||| |||| | || | ||||||| | || || Sbjct 38472726 ATACCCTCCTTATCTTGGATCTTGGCCTTCACATTATCAATTGTGTCTGAGCTCTCCACC 38472667 Query 27201 TCTAGAGTTATAGATTTGCCCGTCAGAGTTTTCACAAAGATTTGCAT 27247 || | || |||| ||| || |||| |||||||||||| || ||||| Sbjct 38472666 TCCAATGTGATAGTTTTTCCAGTCAAAGTTTTCACAAAAATCTGCAT 38472620 Score = 89.7 bits (98), Expect = 4e-13 Identities = 151/216 (70%), Gaps = 2/216 (1%) Strand=Plus/Plus Query 27033 CGCAATACCAAATGTAACGTAGAGTCTTTTTGAATATTGTAGTCG-CTCATGTTGCGCTC 27091 |||| |||| ||| | || || || || || |||||||| ||| || | || ||| | Sbjct 64671012 CGCAGGACCAGATGAAGAGTCGATTCCTTCTGGATATTGTAATCGGCTAAAGTC-CGCCC 64671070 Query 27092 GTCTTCGAGCTGTTTACCGGCGTAAATGAGACGCTGTTGATCCGGCGGCACACCCTCTTT 27151 ||| ||||| || || |||||| | |||||||| || || || ||||| | || || || Sbjct 64671071 GTCCTCGAGTTGCTTTCCGGCGAAGATGAGACGTTGCTGGTCTGGCGGGATGCCTTCCTT 64671130 Query 27152 ATCGGCGATCTTGTTTTTCAGGGTTTCTACAGTGTCTGTGGCTTCAACTTCTAGAGTTAT 27211 || ||| ||| ||||| | | || | ||||| | | || || || ||||| || Sbjct 64671131 GTCTTGGATTTTGGCTTTCACGTTGTCGATCGTGTCAGAGCTCTCGACCTCGAGAGTGAT 64671190 Query 27212 AGATTTGCCCGTCAGAGTTTTCACAAAGATTTGCAT 27247 | || || || || || || || ||||||||||| Sbjct 64671191 CGTCTTTCCGGTAAGCGTCTTAACGAAGATTTGCAT 64671226 >seq6 Length=121339338 Score = 98.7 bits (108), Expect = 8e-16 Identities = 140/197 (71%), Gaps = 0/197 (0%) Strand=Plus/Plus Query 27051 GTAGAGTCTTTTTGAATATTGTAGTCGCTCATGTTGCGCTCGTCTTCGAGCTGTTTACCG 27110 || || || || || || ||||||||| | | |||| |||| |||||||| || ||| Sbjct 51785693 GTGGATTCCTTCTGGATGTTGTAGTCGGCTAAGGTGCGGCCGTCCTCGAGCTGCTTTCCG 51785752 Query 27111 GCGTAAATGAGACGCTGTTGATCCGGCGGCACACCCTCTTTATCGGCGATCTTGTTTTTC 27170 || | ||||| |||||||| || || || | || || || || ||||||| ||| Sbjct 51785753 GCAAAGATGAGGCGCTGTTGGTCGGGTGGGATGCCTTCCTTGTCTTGGATCTTGGCTTTG 51785812 Query 27171 AGGGTTTCTACAGTGTCTGTGGCTTCAACTTCTAGAGTTATAGATTTGCCCGTCAGAGTT 27230 | | || | ||||| | | ||||| ||||| ||||| | || ||||| || ||| Sbjct 51785813 ACATTGTCGATGGTGTCGGAAGACTCAACCTCTAGGGTTATGGTCTTCCCCGTTAGGGTT 51785872 Query 27231 TTCACAAAGATTTGCAT 27247 || || ||||||||||| Sbjct 51785873 TTGACGAAGATTTGCAT 51785889 >seq9 Length=96604005 Score = 95.1 bits (104), Expect = 1e-14 Identities = 139/197 (71%), Gaps = 0/197 (0%) Strand=Plus/Minus Query 27051 GTAGAGTCTTTTTGAATATTGTAGTCGCTCATGTTGCGCTCGTCTTCGAGCTGTTTACCG 27110 || || || || || |||||||||||| | | |||| ||||||| ||||| || ||| Sbjct 73174568 GTGGATTCCTTCTGGATATTGTAGTCGGCTAAGGTGCGGCCGTCTTCAAGCTGCTTCCCG 73174509 Query 27111 GCGTAAATGAGACGCTGTTGATCCGGCGGCACACCCTCTTTATCGGCGATCTTGTTTTTC 27170 ||| | || || || |||||||| || || | || || || || ||||||| ||| Sbjct 73174508 GCGAAGATAAGGCGTTGTTGATCGGGAGGGATGCCTTCCTTGTCTTGGATCTTGGCTTTG 73174449 Query 27171 AGGGTTTCTACAGTGTCTGTGGCTTCAACTTCTAGAGTTATAGATTTGCCCGTCAGAGTT 27230 | | || | ||||| | | || || || || ||||| | ||| ||||| || ||| Sbjct 73174448 ACATTGTCGATGGTGTCGGAAGACTCGACCTCAAGGGTTATGGTTTTCCCCGTTAGGGTT 73174389 Query 27231 TTCACAAAGATTTGCAT 27247 || || ||||| ||||| Sbjct 73174388 TTGACGAAGATCTGCAT 73174372 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 424543813445928