Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Gossypium_20arboreum_20[refseq_20GCF_5F000612285.1_202015-09-28] 75,419 sequences; 1,694,597,732 total letters Query= NC_028091.1 Length=196300 Score E Sequences producing significant alignments: (Bits) Value seq7 104 3e-17 seq2 98.7 1e-15 seq9 96.9 4e-15 seq4 93.3 5e-14 seq10 91.5 2e-13 >seq7 Length=127721098 Score = 104 bits (114), Expect = 3e-17 Identities = 247/370 (67%), Gaps = 10/370 (3%) Strand=Plus/Plus Query 11450 CGATCAAAACGACCCGGGCGAAGGAGGGCGTCATCAAGGATATCCACGCGATTAGTGGCC 11509 || ||||| | |||||| || | | ||| ||||||| | |||| | || || || Sbjct 23626529 CGGTCAAACCTACCCGGTCGCAACAAAGCGGCATCAAGAACATCCGGTCTGTTGGTTGCT 23626588 Query 11510 GCAATAACCACAATGCCAGTCT-CATTGTCAAAGCCATCCATCTCGGTGAGTAATTGATT 11568 || | ||| | | |||| | | || ||| ||||||||||| || | || ||||| Sbjct 23626589 GCCAAAACAATGACACCAGAATTCCCTGA-AAATCCATCCATCTCAGTCAACAACTGATT 23626647 Query 11569 AATTGTTTGTTCTCTCTCATCATTTGCTGGCATACCACCAGCACTGCGTTGCTTGCCCAC 11628 ||||| || ||||||||||||||| || | |||||| | | || | || || Sbjct 23626648 GATTGTCTGCTCTCTCTCATCATTTCCTCCTCCAAGACCAGCTCCTCTCTGTCTCCCAAC 23626707 Query 11629 CGCATCAATCTCATCAATGAAGACAATACATGG----TTGATTTTCGCGGGCGATTTCAA 11684 ||||||||||||||||||||||| || || || ||| ||| ||| | || | Sbjct 23626708 AGCATCAATCTCATCAATGAAGACGATGCAAGGAGCCTTGGATTT----GGCCTTATCGA 23626763 Query 11685 AGAGATCGCGAACCCTTTTGGCACCCACACCAACAAACATCTCCACAAAGTTTGCGGCAG 11744 | | || | || || ||||| || ||||| |||| ||||||||| | | |||| Sbjct 23626764 ATAAGTCCCTTACTCTGGATGCACCTACTCCAACGAACAACTCCACAAACTCAGAAGCAG 23626823 Query 11745 AGCACTGGATGAATGGGACATTTGATTCACCCGCGATGGCTCGGGCGAGGAGGGTCTTTC 11804 ||| || || || || | ||| ||||| | |||| || | || ||||||| Sbjct 23626824 CGCATGAGAAAAACGGAACCCCGGCTTCTCCCGCTACTGCTCTCGCCAATAGAGTCTTTC 23626883 Query 11805 CCGTACCTGG 11814 | ||||| || Sbjct 23626884 CAGTACCAGG 23626893 Score = 89.7 bits (98), Expect = 6e-13 Identities = 222/335 (66%), Gaps = 4/335 (1%) Strand=Plus/Minus Query 11482 ATCAAGGATATCCACGCGATTAGTGGCCGCAATAACCACAATGCCAGTCTCATTGTCAAA 11541 |||||| || || | | ||||| || ||||| || | || || || | | || || Sbjct 37441528 ATCAAGAATGTCAGCTCTGTTAGTTGCTGCAATTACGATGATACCGGTGTTACCCTCGAA 37441469 Query 11542 GCCATCCATCTCGGTGAGTAATTGATTAATTGTTTGTTCTCTCTCATCATTTGCTGGCAT 11601 |||||||| ||||| | | || |||| ||||| |||||||| ||||| || Sbjct 37441468 ACCATCCATTTCGGTCAAAAGCTGGTTAAGAGTTTGCTCTCTCTCGTCATTCCCTCCACC 37441409 Query 11602 ACCACCAGCACTGCGTTGCTTGCCCACCGCATCAATCTCATCAATGAAGACAATACATGG 11661 | ||||| | | ||| || || |||||||| ||||| | ||||| ||||| || Sbjct 37441408 AATACCAGTTCCTCTTTGTCGTCCAACGGCATCAATTTCATCCACAAAGACGATACAGGG 37441349 Query 11662 TTGATTTTCGCGGGCGATTTCAAAGAGATCGCGAACCCTTTTGGCACCCACACCAACAAA 11721 ||| || ||| | | || ||||| ||||| | ||||| ||||||||||| Sbjct 37441348 GGCATTCTCCTTGGCCTTCTTGAAAAGATCACGAACTCGAGAAGCACCAACACCAACAAA 37441289 Query 11722 CATCTCCACAAAGTTTGCGGCAGAGCACTG--GATGAATGGGACATTTGATTCACCCGCG 11779 ||| || ||||| | | | || | || || |||||| ||| | |||||| || Sbjct 37441288 CATTTCAACAAACTCGGAACCTGA--AATGGAGAAGAATGGCACACCAGCTTCACCAGCA 37441231 Query 11780 ATGGCTCGGGCGAGGAGGGTCTTTCCCGTACCTGG 11814 || || || || || |||||||| || || || Sbjct 37441230 ATTGCCTTAGCAAGAAGAGTCTTTCCGGTTCCAGG 37441196 >seq2 Length=101023042 Score = 98.7 bits (108), Expect = 1e-15 Identities = 160/228 (70%), Gaps = 2/228 (1%) Strand=Plus/Plus Query 111941 TGCGGTCTTGGTGTACCAGCATTGAAGAGGGTTGGTGTTGCGTGAATGAACATACCTTGG 112000 || || ||||| || ||||||||||| || || || | || ||| | ||| | ||| Sbjct 61425386 TGAGGCCTTGGAGTTCCAGCATTGAAAAGTGTGGGAGAAGCATGAGTAAACCATCTTTGA 61425445 Query 112001 GACATCTTGTCGTATGTCTCCAAGACAGAATCAATGTCTTCCCCGTGGATGCCGATTGCG 112060 |||||| ||| || || | | ||||||||||||| | | || || || | ||| Sbjct 61425446 GACATCATGTGATAAGTTTTTATAGCAGAATCAATGTCATTCTTATGAATTCCAACTGCA 61425505 Query 112061 ACCCGCATGAACATGTACTGTGGGGTTTCCATGAGGATGCCATCGAGCCGTTGA-AGATA 112119 |||| ||| ||||||| || || |||| || | | || | || | || | || || Sbjct 61425506 ACCCTCATTAACATGTGTTGGGGCCTTTCTAT-AACCTTCCCTTGAACTTTTAAGAGGTA 61425564 Query 112120 GCTCTTCTCAAGGGTTTTGAGACCAAAGTAACCAAAATCATAGTCCCG 112167 | | ||||||||||||||| |||||| ||| || | ||| ||||||| Sbjct 61425565 GGACCTCTCAAGGGTTTTGAAACCAAAATAATCATAGTCAAAGTCCCG 61425612 >seq9 Length=96604005 Score = 96.9 bits (106), Expect = 4e-15 Identities = 156/223 (70%), Gaps = 5/223 (2%) Strand=Plus/Minus Query 122670 GTGGAGACCCTCATCTCGGGAAATAAGTTCATTTGAGAAGCATAGACCTGGCATGAGACC 122729 ||||||||| |||||||| || || | || |||||||| || || ||||| | || Sbjct 49336376 GTGGAGACCTTCATCTCGTGAGATTAACTCGTTTGAGAAAGTTAATCCGGGCATTAACCC 49336317 Query 122730 CCGCTTCTTCAACCAATAAATAGCGCAGAATGACCCGGAGAAGAAGATACCCTCCACACA 122789 || ||| || |||||| | || || ||||| |||||||| ||||| ||||| || || Sbjct 49336316 CCTCTTTTTTAACCAAAATATGGCACAGAAACTTCCGGAGAAAAAGATCCCCTCTACGCA 49336257 Query 122790 CGCAAACGCAAAAAGGCGTTCGGCGAAGGAGCGAGACTTTG-CATCAAACCATTTCATTG 122848 ||||| || | | ||||||||||| | || | | || | ||||||||| | Sbjct 49336256 AGCAAAAGCGATTAACCGTTCGGCGAA----AGTTTCTCCGCCGTCGATCCATTTCATAG 49336201 Query 122849 CCCATTTCGCCTTCTTCTCAATACATGGTACAGTTTGGATGGC 122891 |||| | || || || | | ||| || || || | |||||| Sbjct 49336200 CCCACTCGGCTTTTTTAGCCACACACGGCACCGTCTCGATGGC 49336158 >seq4 Length=137675496 Score = 93.3 bits (102), Expect = 5e-14 Identities = 159/228 (70%), Gaps = 2/228 (1%) Strand=Plus/Minus Query 111941 TGCGGTCTTGGTGTACCAGCATTGAAGAGGGTTGGTGTTGCGTGAATGAACATACCTTGG 112000 || || ||||| || ||||||||||| || || || | || ||| ||||| | ||| Sbjct 106876833 TGAGGCCTTGGAGTGCCAGCATTGAAAAGAGTGGGAGAAGCATGAGTGAACCATCTTTGA 106876774 Query 112001 GACATCTTGTCGTATGTCTCCAAGACAGAATCAATGTCTTCCCCGTGGATGCCGATTGCG 112060 |||||| ||| || || | | ||||||||||||| ||| || || || | || Sbjct 106876773 GACATCATGTGATAAGTTTTTATAGCAGAATCAATGTCATCCTTATGAATTCCAACAGCA 106876714 Query 112061 ACCCGCATGAACATGTACTGTGGGGTTTCCATGAGGATGCCATCGAGCCGTTGA-AGATA 112119 |||| ||| ||||||| ||| || |||| || | | || | || | | | ||||| Sbjct 106876713 ACCCTCATTAACATGTGCTGAGGCCTTTCTAT-AACCTTCCCTTGAACTTTCAAGAGATA 106876655 Query 112120 GCTCTTCTCAAGGGTTTTGAGACCAAAGTAACCAAAATCATAGTCCCG 112167 | |||| |||||||||| ||||||||| || | ||| |||| || Sbjct 106876654 AGACCTCTCCAGGGTTTTGAAGCCAAAGTAATCATAGTCAAAGTCACG 106876607 >seq10 Length=114683840 Score = 91.5 bits (100), Expect = 2e-13 Identities = 191/283 (67%), Gaps = 14/283 (5%) Strand=Plus/Minus Query 11539 AAAGCCATCCATCTCGGTGAGTAATTGATTAATTGTTTGTTCTCTCTCATCATTTGCTGG 11598 ||| ||||||||||| || || || || || ||||| || ||||| ||||||||| || Sbjct 19533280 AAATCCATCCATCTCAGTCAGCAACTGGTTGATTGTCTGCTCTCTTTCATCATTTCCT-- 19533223 Query 11599 CATACCA--CCAGCACTGCGTTGCTTGCCCACCGCATCAATCTCATCAATGAAGACAATA 11656 | | | | ||||| | | || | || || ||||| |||||||| ||||| ||||| Sbjct 19533222 CCTCCAAGCCCAGCTCCTCTCTGTCTCCCAACAGCATCGATCTCATCTATGAATACAATG 19533163 Query 11657 CATGG-----TTGATTTTCGCGGGCGATTTCAAAGAGATCGCGAACCCTTTTGGCACCCA 11711 || || | |||||| || |||| || | ||| | ||||| || || | Sbjct 19533162 CAAGGCGCTTTGGATTTT-----GCCTTTTCGAACAAATCCCTTACCCTGGACGCGCCTA 19533108 Query 11712 CACCAACAAACATCTCCACAAAGTTTGCGGCAGAGCACTGGATGAATGGGACATTTGATT 11771 | ||||| |||| ||||||||| | | || | ||| || || || || | || Sbjct 19533107 CTCCAACGAACAACTCCACAAACTCCGAAGCTGCGCATGAGAAAAAGGGCACCCCGGCTT 19533048 Query 11772 CACCCGCGATGGCTCGGGCGAGGAGGGTCTTTCCCGTACCTGG 11814 | || || | ||||| || | || |||||||| ||||| || Sbjct 19533047 CCCCTGCCACGGCTCTCGCCAATAGAGTCTTTCCGGTACCAGG 19533005 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 627439930682400