Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Gossypium_20arboreum_20[refseq_20GCF_5F000612285.1_202015-09-28] 75,419 sequences; 1,694,597,732 total letters Query= NC_028093.1 Length=182309 Score E Sequences producing significant alignments: (Bits) Value seq7 125 8e-24 seq2 98.7 1e-15 seq4 95.1 1e-14 seq12 87.8 2e-12 seq10 82.4 9e-11 >seq7 Length=127721098 Score = 125 bits (138), Expect = 8e-24 Identities = 250/365 (68%), Gaps = 4/365 (1%) Strand=Plus/Minus Query 9526 ATCAAAGCGACCTGGACGAAGGAGCGCGTCATCAAGGATATCAACGCGATTCGTCGCGGC 9585 |||||| || ||||| | | | ||| |||||| || ||| | | || || || || Sbjct 37441558 ATCAAACCGTCCTGGCCTCAACAAAGCGGAATCAAGAATGTCAGCTCTGTTAGTTGCTGC 37441499 Query 9586 GATGACAACAATACCTGTTTCATTATCAAAACCATCCATCTCTGTCAAAAGTTGGTTAAT 9645 || || | ||||| || | | || ||||||||||| || |||||||| ||||||| Sbjct 37441498 AATTACGATGATACCGGTGTTACCCTCGAAACCATCCATTTCGGTCAAAAGCTGGTTAAG 37441439 Query 9646 AGTTTGTTCCCGTTCATCATTCGCTGGCATACCACCAGCACTGCGTTGCTTTCCCACGGC 9705 |||||| || | || |||||| || | ||||| | | ||| ||| ||||| Sbjct 37441438 AGTTTGCTCTCTCTCGTCATTCCCTCCACCAATACCAGTTCCTCTTTGTCGTCCAACGGC 37441379 Query 9706 ATCAATCTCATCAATGAAGACGATGCATGGTTGATT-TTCGCGAGCGACTTCAAAGAGAT 9764 |||||| ||||| | |||||||| || || ||| | | | | ||| ||| |||| Sbjct 37441378 ATCAATTTCATCCACAAAGACGATACAGGGGGCATTCTCCTTGGCCTTCTTGAAA-AGAT 37441320 Query 9765 CCCGTACACGCTTGGCGCCCACACCAACAAACATCTCCACAAAGTTTGCGGCGGAACATT 9824 | || || || || || |||||||||||||| || ||||| | | | ||| || Sbjct 37441319 CACGAACTCGAGAAGCACCAACACCAACAAACATTTCAACAAACTCGGAACCTGAA-ATG 37441261 Query 9825 G-GATGAAGGGGACATTAGATTCACCCGCAATGGCTCGGGCGAGAAGAGTCTTACCCGTA 9883 | || ||| || ||| || |||||| ||||| || || ||||||||||| || || Sbjct 37441260 GAGAAGAATGGCACACCAGCTTCACCAGCAATTGCCTTAGCAAGAAGAGTCTTTCCGGTT 37441201 Query 9884 CCTGG 9888 || || Sbjct 37441200 CCAGG 37441196 >seq2 Length=101023042 Score = 98.7 bits (108), Expect = 1e-15 Identities = 159/226 (70%), Gaps = 2/226 (1%) Strand=Plus/Minus Query 104141 GACTACGACTTTGGTTATTTTGGTCTCAAAACCCTTGAGAAGAGCTATCT-TCAACGGCT 104199 |||| |||| || |||||||||| ||||||||||||||| | ||| || | || | | Sbjct 61425609 GACTTTGACTATGATTATTTTGGTTTCAAAACCCTTGAGAGGTCCTACCTCTTAAAAGTT 61425550 Query 104200 CGATGGTGTCTTGATGGAAACCCCACAGTACATGTTCATGCGCGTGGCCATCGGTATTCA 104259 | | || || || |||| || || ||||||| ||| | || || | || ||||| Sbjct 61425549 CAAGGGAAGGTT-ATAGAAAGGCCCCAACACATGTTAATGAGGGTTGCAGTTGGAATTCA 61425491 Query 104260 TGGGGAAGACATTGATTCTGTCTTGGAGACATACGACAAGATGTCCCAAGGTATGTTCAT 104319 | | | ||||||||||||| | | || || ||| |||||| ||| | ||| | Sbjct 61425490 TAAGAATGACATTGATTCTGCTATAAAAACTTATCACATGATGTCTCAAAGATGGTTTAC 61425431 Query 104320 TCACGCAACACCAACCCTCTTCAATGCTGGTACACCAAGACCCCAA 104365 ||| || | || || || ||||||||||| || ||||| || ||| Sbjct 61425430 TCATGCTTCTCCCACACTTTTCAATGCTGGAACTCCAAGGCCTCAA 61425385 >seq4 Length=137675496 Score = 95.1 bits (104), Expect = 1e-14 Identities = 158/226 (70%), Gaps = 2/226 (1%) Strand=Plus/Plus Query 104141 GACTACGACTTTGGTTATTTTGGTCTCAAAACCCTTGAGAAGAGCTATCT-TCAACGGCT 104199 |||| |||| || ||| ||||| |||||||||| |||| | ||||| | | | | Sbjct 106876610 GACTTTGACTATGATTACTTTGGCTTCAAAACCCTGGAGAGGTCTTATCTCTTGAAAGTT 106876669 Query 104200 CGATGGTGTCTTGATGGAAACCCCACAGTACATGTTCATGCGCGTGGCCATCGGTATTCA 104259 | | || || || |||| || ||| ||||||| ||| | || || | || ||||| Sbjct 106876670 CAAGGGAAGGTT-ATAGAAAGGCCTCAGCACATGTTAATGAGGGTTGCTGTTGGAATTCA 106876728 Query 104260 TGGGGAAGACATTGATTCTGTCTTGGAGACATACGACAAGATGTCCCAAGGTATGTTCAT 104319 | ||| ||||||||||||| | | || || ||| |||||| ||| | ||||| Sbjct 106876729 TAAGGATGACATTGATTCTGCTATAAAAACTTATCACATGATGTCTCAAAGATGGTTCAC 106876788 Query 104320 TCACGCAACACCAACCCTCTTCAATGCTGGTACACCAAGACCCCAA 104365 ||| || | || || || ||||||||||| || ||||| || ||| Sbjct 106876789 TCATGCTTCTCCCACTCTTTTCAATGCTGGCACTCCAAGGCCTCAA 106876834 >seq12 Length=146008498 Score = 87.8 bits (96), Expect = 2e-12 Identities = 306/469 (65%), Gaps = 14/469 (3%) Strand=Plus/Minus Query 9556 ATCAAGGATATCAACGCGATTCGTCGCGGCGATGACAACAATACCTGTTTCATTATCAAA 9615 ||| || || ||| | ||| || || || ||||||| | || || | | | ||| Sbjct 60130891 ATCCAGAATTTCAGGCCTATTAGTGGCAGCAATGACAATGACTCCAGTATTACCAGTAAA 60130832 Query 9616 ACCATCCATCTCTGTCAAAAGTTGGTTAATAGTTTGTTCCCGTTCATCATTCGCTGGCAT 9675 ||||||||| || ||||| || || || | |||||| |||| |||||||||| || Sbjct 60130831 ACCATCCATTTCAGTCAACAGCTGATTCAAAGTTTGCTCCCTTTCATCATTCCCT---CC 60130775 Query 9676 ACCA---CCAGCACTGCGTTGCTTTCCCACGGCATCAATCTCATCAATGAAGACGATGCA 9732 |||| |||| | | || |||| || |||||||||||||| ||||| || | || Sbjct 60130774 ACCAATCCCAGTTCCTCTCTGTCTTCCAACAGCATCAATCTCATCGATGAACACCAAACA 60130715 Query 9733 TGGTTGATTTTCGCGAGCGACTTCAAAGAGATCCCGTACACGCTTG--GCGCCCACACCA 9790 ||| ||| | || | ||| || |||| || || || | || || || ||| Sbjct 60130714 TGGGGAATTAGCCTTTGCCTTGTTAAACAGGTCCC-TA-ACTCTGGAAGCTCCAACGCCA 60130657 Query 9791 ACAAACATCTCCACAAAGTTTGCGGCGGAACATTGGATGAAGGGGACATTAGATTCACCC 9850 ||||||||||| | || | || | ||| | ||| || || | ||| || Sbjct 60130656 ACAAACATCTCGATGAACTCTGAACCAGAAAGGGAAAAGAAAGGAACCCCTGCTTCCCCT 60130597 Query 9851 GCAATGGCTCGGGCGAGAAGAGTCTTACCCGTACCTGGCTTACCCGCGAGGAGGGCACCT 9910 |||||||| ||| || | |||||||| || ||||| || || || | ||| Sbjct 60130596 GCAATGGCCTTGGCCAGCAATGTCTTACCAGTCCCTGGAGGTCCAATTAGAAGCACTCCT 60130537 Query 9911 CGTGGAATCTTGGCGCCACTTCC--AAAGTATCTCTCAGGTTGCTTAAGAAAATCCACAA 9968 ||||| |||| ||| || | || | | ||| |||| ||||| || ||||| | Sbjct 60130536 TTGGGAATTGTGGCACCAATTGCTGCAAATTTTTCTGGGGTT-TTTAAG-AACTCCACTA 60130479 Query 9969 TTTCTTCCAATTCATCTTTGGCGGCGTCAATCCCCTCAACATCGGTAAA 10017 |||| || || | ||||| | ||||| || | |||||| |||| Sbjct 60130478 CCTCTTGAAAATCTTGCTTGGCTTCATCAATACCAGCTACATCGTTAAA 60130430 >seq10 Length=114683840 Score = 82.4 bits (90), Expect = 9e-11 Identities = 189/283 (67%), Gaps = 14/283 (5%) Strand=Plus/Minus Query 9613 AAAACCATCCATCTCTGTCAAAAGTTGGTTAATAGTTTGTTCCCGTTCATCATTCGCTGG 9672 ||| ||||||||||| |||| | ||||| || || || || | ||||||||| || Sbjct 19533280 AAATCCATCCATCTCAGTCAGCAACTGGTTGATTGTCTGCTCTCTTTCATCATTTCCT-- 19533223 Query 9673 CATACCA--CCAGCACTGCGTTGCTTTCCCACGGCATCAATCTCATCAATGAAGACGATG 9730 | | | | ||||| | | || | || || ||||| |||||||| ||||| || ||| Sbjct 19533222 CCTCCAAGCCCAGCTCCTCTCTGTCTCCCAACAGCATCGATCTCATCTATGAATACAATG 19533163 Query 9731 CATGG-----TTGATTTTCGCGAGCGACTTCAAAGAGATCCCGTACACGCTTGGCGCCCA 9785 || || | |||||| || ||| || | ||||| ||| | ||||| | Sbjct 19533162 CAAGGCGCTTTGGATTTT-----GCCTTTTCGAACAAATCCCTTACCCTGGACGCGCCTA 19533108 Query 9786 CACCAACAAACATCTCCACAAAGTTTGCGGCGGAACATTGGATGAAGGGGACATTAGATT 9845 | ||||| |||| ||||||||| | | || | ||| || ||||| || | || Sbjct 19533107 CTCCAACGAACAACTCCACAAACTCCGAAGCTGCGCATGAGAAAAAGGGCACCCCGGCTT 19533048 Query 9846 CACCCGCAATGGCTCGGGCGAGAAGAGTCTTACCCGTACCTGG 9888 | || || | ||||| || | |||||||| || ||||| || Sbjct 19533047 CCCCTGCCACGGCTCTCGCCAATAGAGTCTTTCCGGTACCAGG 19533005 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 582710938171560