Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Gossypium_20arboreum_20[refseq_20GCF_5F000612285.1_202015-09-28] 75,419 sequences; 1,694,597,732 total letters Query= NC_028108.1 Length=171454 Score E Sequences producing significant alignments: (Bits) Value seq9 111 2e-19 >seq9 Length=96604005 Score = 111 bits (122), Expect = 2e-19 Identities = 242/356 (68%), Gaps = 6/356 (2%) Strand=Plus/Plus Query 59766 AAGGATGTCCAGATTGCCGAGGCCCGGTCGTTCTACGCGTATC--AGTCGTTCAACGAGT 59823 || || ||||| || ||||||| || | || || | || || | ||| | | ||| Sbjct 49336023 AAAGAGGTCCAAATCTCCGAGGCGCGTGCTTTTTATG-GTTTCCAAATCGCT-ATCGAAA 49336080 Query 59824 CTATCCACTCCGAGACGTACTCGCTCATGATCGATAAGTTGGTCAAGGATCCGGAAGAGA 59883 |||||||||||||| |||| ||| | |||| | | | || ||| | || || | Sbjct 49336081 ATATCCACTCCGAGATGTACAGTCTCCTTCTCGAGACTTACATAAAAGATTCCGACGAAA 49336140 Query 59884 AGGCTGGTCTGTTCCGTGCCATAGAGACGTCCCCCGCAGTTAAACAAAAAGCAGAATGGG 59943 || |||| ||||| ||||| |||||| || || ||||||| || |||| Sbjct 49336141 AGAACCGTCTTTTCCGCGCCATCGAGACGGTGCCGTGTGTGGCTAAAAAAGCCGAGTGGG 49336200 Query 59944 CCATGCAGTGGAT-GAGTCCTGGAGCATCATTTGCACAACGTCTCATAGCTTTTGCATGC 60002 | ||| | ||||| || | |||| | | || || |||| | || |||||||| ||| Sbjct 49336201 CTATGAAATGGATCGACGGC-GGAGAAACTTTCGCCGAACGGTTAATCGCTTTTGCTTGC 49336259 Query 60003 GTGGAAGGAATCTTCTTCTCTGGCTCGTTCTGTGCTATTTTCTGGCTCAAAAAGCGTGGC 60062 || || || ||||| ||||| || |||||||| || || ||| | |||||| | || Sbjct 49336260 GTAGAGGGGATCTTTTTCTCCGGAAGTTTCTGTGCCATATTTTGGTTAAAAAAGAGGGGG 49336319 Query 60063 CTCATGCCGGGCCTGAGTTTCTCCAACGAGCTGATTTCCCGGGACGAGGGCCTCCA 60118 | ||||| || | | |||||| |||||| | || || || || || || ||||| Sbjct 49336320 TTAATGCCCGGATTAACTTTCTCAAACGAGTTAATCTCACGAGATGAAGGTCTCCA 49336375 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 548007685101360