Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Gossypium_20arboreum_20[refseq_20GCF_5F000612285.1_202015-09-28] 75,419 sequences; 1,694,597,732 total letters Query= NC_029304.1 Length=111246 Score E Sequences producing significant alignments: (Bits) Value seq10 100 2e-16 seq12 96.9 2e-15 seq7 96.9 2e-15 >seq10 Length=114683840 Score = 100 bits (110), Expect = 2e-16 Identities = 142/195 (73%), Gaps = 6/195 (3%) Strand=Plus/Plus Query 27790 ATGCAAATTTTTGTGAAAACTCTTACTGGGAAATGTATTACAATTGATGTCGAAAGCACC 27849 ||||| || ||||||||||| |||||||| ||| || || |||| || |||||| || Sbjct 38459540 ATGCAGATCTTTGTGAAAACCCTTACTGGTAAAACCATCACCCTTGAGGTGGAAAGCTCC 38459599 Query 27850 GA--CGATGTACAATCGGTCAAACAAAAAATAGCCGACAAAGAAGGTGTTCCGATGGAGC 27907 || | || | ||| ||||| ||||| ||||||||||| |||| || | Sbjct 38459600 GATACTATTGATAAT--GTCAAGGCCAAAATCCAAGACAAAGAAGGCATTCCTCCAGACC 38459657 Query 27908 AGCAACGGTTAATTTTTGCCGGAAAACAATTGGACGACGAACGCA-GCTTGTCCGATTAC 27966 | || || | |||||||||||||||||| | || || | || | |||| |||| ||| Sbjct 38459658 AACAGAGGCTTATTTTTGCCGGAAAACAACTCGAGGATGGCCGAACTCTTG-CCGACTAC 38459716 Query 27967 AACATCCAAAAAGAG 27981 ||||||||||| ||| Sbjct 38459717 AACATCCAAAAGGAG 38459731 Score = 86.0 bits (94), Expect = 4e-12 Identities = 157/224 (70%), Gaps = 16/224 (7%) Strand=Plus/Plus Query 27789 AATGCAAATTTTTGTGAAAACTCTTACTGGGAAATGTATTACAATTGATGTCGAAAGCAC 27848 |||||| ||||||||||||||| | ||||| ||| ||||||| | || || || ||| | Sbjct 38460223 AATGCAGATTTTTGTGAAAACTTTGACTGGAAAAACTATTACATTGGAGGTGGAGAGCTC 38460282 Query 27849 CGACGATGTACAATCGGTCAAAC---AAAA--AATAGCC--GACAAAGAAGGTGTTCCGA 27901 ||| ||||| | | ||| || | || | || ||||| || ||| | || Sbjct 38460283 AGAC-----ACAATTGAT--AACGTGAAGACCAAGATCCAAGACAAGGAGGGTATCCCAC 38460335 Query 27902 TGGAGCAGCAACGGTTAATTTTTGCCGGAAAACAATTGGACGA-CGAACGCAGCTTGTCC 27960 || ||||| |||| |||||||| ||||| ||| | || || | | | |||| | Sbjct 38460336 CTGACCAGCAGAGGTTGATTTTTGCTGGAAAGCAACTCGAGGATGGGAGGACTCTTG-CG 38460394 Query 27961 GATTACAACATCCAAAAAGAGAGCACTTTGCATTTGGTTTTGCG 28004 ||||| ||||||||||| ||| || |||| |||||| |||| Sbjct 38460395 GATTATAACATCCAAAAGGAGTCAACCCTGCACTTGGTTCTGCG 38460438 Score = 84.2 bits (92), Expect = 2e-11 Identities = 99/134 (74%), Gaps = 0/134 (0%) Strand=Plus/Minus Query 27883 GACAAAGAAGGTGTTCCGATGGAGCAGCAACGGTTAATTTTTGCCGGAAAACAATTGGAC 27942 ||||||||||| |||| || |||||| |||| |||||||| || |||||| |||| Sbjct 64670905 GACAAAGAAGGAATTCCACCAGATCAGCAAAGGTTGATTTTTGCTGGGAAACAACTGGAA 64670846 Query 27943 GACGAACGCAGCTTGTCCGATTACAACATCCAAAAAGAGAGCACTTTGCATTTGGTTTTG 28002 |||| | | | ||| | |||||||| || ||||| ||| |||| | || | ||| | Sbjct 64670845 GACGGAAGGACTTTGGCTGATTACAATATTCAAAAGGAGTCCACTCTTCACCTTGTTCTT 64670786 Query 28003 CGTTTGCGTGGCGG 28016 ||| | ||||| || Sbjct 64670785 CGTCTTCGTGGTGG 64670772 Score = 84.2 bits (92), Expect = 2e-11 Identities = 157/229 (69%), Gaps = 4/229 (2%) Strand=Plus/Minus Query 27790 ATGCAAATTTTTGTGAAAACTCTTACTGGGAAATGTATTACAATTGATGTCGAAAGCACC 27849 |||||||| || |||||||| | || || || || || | || ||||| ||| || Sbjct 64671454 ATGCAAATCTTCGTGAAAACCTTGACCGGCAAGACAATCACTCTCGAGGTCGAGAGCTCC 64671395 Query 27850 GAC--GATGTACAATCGGTCAAACAAAAAATAGCCGACAAAGAAGGTGTTCCGATGGAGC 27907 ||| ||| |||| || || || || ||||| ||||| | || || | Sbjct 64671394 GACACGATCGACAAC--GTTAAGGCGAAGATCCAAGACAAGGAAGGCATCCCCCCAGACC 64671337 Query 27908 AGCAACGGTTAATTTTTGCCGGAAAACAATTGGACGACGAACGCAGCTTGTCCGATTACA 27967 ||||||| | || || |||||||||||| | || |||| || | |||| |||| |||| Sbjct 64671336 AGCAACGTCTCATCTTCGCCGGAAAACAACTCGAAGACGGCCGTACCTTGGCCGACTACA 64671277 Query 27968 ACATCCAAAAAGAGAGCACTTTGCATTTGGTTTTGCGTTTGCGTGGCGG 28016 ||||||| || ||| || | || | || | |||||||||||||| Sbjct 64671276 ACATCCAGAAGGAGTCAACGCTCCACCTTGTCCTTCGTTTGCGTGGCGG 64671228 Score = 82.4 bits (90), Expect = 5e-11 Identities = 138/195 (71%), Gaps = 6/195 (3%) Strand=Plus/Plus Query 27790 ATGCAAATTTTTGTGAAAACTCTTACTGGGAAATGTATTACAATTGATGTCGAAAGCACC 27849 ||||| || ||||||||||| |||||||| || || || |||| || ||||| | Sbjct 38471480 ATGCAGATCTTTGTGAAAACCCTTACTGGTAAGACCATCACCCTTGAGGTAGAAAGTTCT 38471539 Query 27850 GA--CGATGTACAATCGGTCAAACAAAAAATAGCCGACAAAGAAGGTGTTCCGATGGAGC 27907 || | || | ||| ||||| ||||| ||||||||||| |||| || | Sbjct 38471540 GATACTATCGATAAT--GTCAAGGCTAAAATCCAAGACAAAGAAGGGATTCCTCCTGACC 38471597 Query 27908 AGCAACGGTTAATTTTTGCCGGAAAACAATTGGACGACGAACGCA-GCTTGTCCGATTAC 27966 | ||| || | || ||||||||||||||| | || || | || | |||| |||| ||| Sbjct 38471598 AACAAAGGCTTATCTTTGCCGGAAAACAACTTGAGGATGGCCGAACTCTTG-CCGACTAC 38471656 Query 27967 AACATCCAAAAAGAG 27981 || |||||||| ||| Sbjct 38471657 AATATCCAAAAGGAG 38471671 Score = 82.4 bits (90), Expect = 5e-11 Identities = 138/195 (71%), Gaps = 6/195 (3%) Strand=Plus/Plus Query 27790 ATGCAAATTTTTGTGAAAACTCTTACTGGGAAATGTATTACAATTGATGTCGAAAGCACC 27849 ||||| || ||||| ||||| |||||||| || || || |||| || || ||| || Sbjct 38471936 ATGCAGATCTTTGTAAAAACCCTTACTGGTAAGACCATCACCCTTGAGGTGGAGAGCTCC 38471995 Query 27850 GA--CGATGTACAATCGGTCAAACAAAAAATAGCCGACAAAGAAGGTGTTCCGATGGAGC 27907 || | || | ||| ||||| || || ||||| ||||| |||| || | Sbjct 38471996 GATACTATCGATAAT--GTCAAGGCCAAGATCCAAGACAAGGAAGGGATTCCACCAGATC 38472053 Query 27908 AGCAACGGTTAATTTTTGCCGGAAAACAATTGGACGA-CGAACGCAGCTTGTCCGATTAC 27966 |||| |||| |||||||||||||||||| | || || | | | |||| | |||||| Sbjct 38472054 AGCAGAGGTTGATTTTTGCCGGAAAACAACTCGAAGATGGTAGGACACTTG-CAGATTAC 38472112 Query 27967 AACATCCAAAAAGAG 27981 |||||||| |||||| Sbjct 38472113 AACATCCAGAAAGAG 38472127 >seq12 Length=146008498 Score = 96.9 bits (106), Expect = 2e-15 Identities = 160/229 (70%), Gaps = 4/229 (2%) Strand=Plus/Minus Query 27790 ATGCAAATTTTTGTGAAAACTCTTACTGGGAAATGTATTACAATTGATGTCGAAAGCACC 27849 ||||| || || || ||||| || || || || || || | || ||||||||| | Sbjct 12766913 ATGCAGATCTTCGTCAAAACCCTGACCGGCAAGACCATAACTTTGGAAGTCGAAAGCTCT 12766854 Query 27850 GACG--ATGTACAATCGGTCAAACAAAAAATAGCCGACAAAGAAGGTGTTCCGATGGAGC 27907 ||| || |||| ||||| ||| || ||||| ||||| | || || | Sbjct 12766853 GACACCATTGACAAC--GTCAAGGCAAAGATCCAAGACAAGGAAGGCATCCCACCAGACC 12766796 Query 27908 AGCAACGGTTAATTTTTGCCGGAAAACAATTGGACGACGAACGCAGCTTGTCCGATTACA 27967 ||||| || | || |||||||| |||||| | || |||| |||| |||| ||||||||| Sbjct 12766795 AGCAAAGGCTCATATTTGCCGGGAAACAACTCGAGGACGGTCGCACCTTGGCCGATTACA 12766736 Query 27968 ACATCCAAAAAGAGAGCACTTTGCATTTGGTTTTGCGTTTGCGTGGCGG 28016 ||||||| || ||| ||| | |||||||| ||| | | ||||| || Sbjct 12766735 ACATCCAGAAGGAGTCCACCCTCCATTTGGTATTGAGGCTTCGTGGTGG 12766687 Score = 84.2 bits (92), Expect = 2e-11 Identities = 157/229 (69%), Gaps = 4/229 (2%) Strand=Plus/Minus Query 27790 ATGCAAATTTTTGTGAAAACTCTTACTGGGAAATGTATTACAATTGATGTCGAAAGCACC 27849 ||||| ||||| || || || | ||||||||| || || | || || || || || Sbjct 12766685 ATGCAGATTTTCGTCAAGACGTTGACTGGGAAAACCATAACTTTGGAGGTGGAGAGTTCC 12766626 Query 27850 GA--CGATGTACAATCGGTCAAACAAAAAATAGCCGACAAAGAAGGTGTTCCGATGGAGC 27907 || |||| ||||| || || || || ||||||||||| |||| || | Sbjct 12766625 GATACGATCGACAAT--GTTAAGGCGAAGATTCAGGACAAAGAAGGAATTCCACCAGATC 12766568 Query 27908 AGCAACGGTTAATTTTTGCCGGAAAACAATTGGACGACGAACGCAGCTTGTCCGATTACA 27967 ||||| |||| ||||| || || ||||||||||| || | | | | ||| | ||||||| Sbjct 12766567 AGCAAAGGTTGATTTTCGCTGGGAAACAATTGGAAGATGGAAGGACTTTGGCTGATTACA 12766508 Query 27968 ACATCCAAAAAGAGAGCACTTTGCATTTGGTTTTGCGTTTGCGTGGCGG 28016 | || || || || |||| | || | || |||||| | ||||| || Sbjct 12766507 ATATTCAGAAGGAATCCACTCTCCACCTTGTCTTGCGTCTTCGTGGTGG 12766459 >seq7 Length=127721098 Score = 96.9 bits (106), Expect = 2e-15 Identities = 139/194 (72%), Gaps = 4/194 (2%) Strand=Plus/Minus Query 27790 ATGCAAATTTTTGTGAAAACTCTTACTGGGAAATGTATTACAATTGATGTCGAAAGCACC 27849 |||||||| ||||| |||||||||||||| || || || |||| || |||||| || Sbjct 44510182 ATGCAAATATTTGTCAAAACTCTTACTGGCAAGACAATCACCCTTGAAGTGGAAAGCTCC 44510123 Query 27850 GACG--ATGTACAATCGGTCAAACAAAAAATAGCCGACAAAGAAGGTGTTCCGATGGAGC 27907 ||| || | ||| ||||| || || |||||||||||| | || || | Sbjct 44510122 GACACAATTGATAAT--GTCAAGGCCAAGATCCAAGACAAAGAAGGTATCCCTCCTGACC 44510065 Query 27908 AGCAACGGTTAATTTTTGCCGGAAAACAATTGGACGACGAACGCAGCTTGTCCGATTACA 27967 | || || | || ||||| |||||||||||||| || | |||| | | | || |||| Sbjct 44510064 AACAGAGGCTTATCTTTGCTGGAAAACAATTGGAGGATGGCCGCACCCTTGCTGACTACA 44510005 Query 27968 ACATCCAAAAAGAG 27981 ||||||| |||||| Sbjct 44510004 ACATCCAGAAAGAG 44509991 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 355535302291413