Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Gossypium_20arboreum_20[refseq_20GCF_5F000612285.1_202015-09-28] 75,419 sequences; 1,694,597,732 total letters Query= NC_029996.1 Length=134272 Score E Sequences producing significant alignments: (Bits) Value seq11 91.5 1e-13 seq7 89.7 4e-13 seq6 84.2 2e-11 seq10 82.4 7e-11 >seq11 Length=105699404 Score = 91.5 bits (100), Expect = 1e-13 Identities = 156/221 (71%), Gaps = 4/221 (2%) Strand=Plus/Minus Query 39069 GCGTAACACCAAATGTAGCGTGCTCTCTTTTTGTATATTATAATCGGCAAGTGTTCGTTC 39128 |||||| || | || || ||| ||||| || || |||||||| ||||| || || | Sbjct 76982563 GCGTAAGACGAGGTGGAGGGTGGATTCTTTCTGGATGTTATAATCAGCAAGGGTCCGACC 76982504 Query 39129 GTCATCAAGCTGTTTGCCCGCAAATATAAGACGCTGCTGGTC-GGTGGGCACGCTCTCTT 39187 ||| || ||||||||||| || || || |||||||||||||| |||||| | || || | Sbjct 76982503 GTCTTCGAGCTGTTTGCCAGCGAAAATGAGACGCTGCTGGTCGGGTGGGATCCCT-TCCT 76982445 Query 39188 TGTCCATGATTTTCTGTTTGAGCGTCG-CCACCGTATCGCTCGACTCCACGTCCACCGTG 39246 |||| ||| || |||| ||| | | | || ||| || || || | || Sbjct 76982444 TGTCTTGGATCTTGGCCTTGA-CGTTGTCGATGGTGTCGGAGCTTTCGACCTCGAGTGTT 76982386 Query 39247 ATACTTTTTCCCGTCAGCGTTTTAACAAAGATTTGCATCTT 39287 || | || || || || ||||| |||||||| |||||||| Sbjct 76982385 ATGGTCTTGCCGGTAAGGGTTTTCACAAAGATCTGCATCTT 76982345 >seq7 Length=127721098 Score = 89.7 bits (98), Expect = 4e-13 Identities = 150/213 (70%), Gaps = 8/213 (4%) Strand=Plus/Minus Query 39076 ACCAAATGTAGCGTGCTCTCTTTTTGTATATTATAATCGGCAAGTGTTCGTTCGTCATCA 39135 |||||||| || || ||| || || ||||||||||||||||| || | | | || ||| Sbjct 86220368 ACCAAATGGAGAGTAGACTCCTTCTGGATATTATAATCGGCAAGAGTCCTTCCATCTTCA 86220309 Query 39136 AGCTGTTTGCCCGCAAATATAAGACGCTGCTGGTC-GGTGGGCACGCTCTCTTTGTCCAT 39194 || ||||| || ||||| || | | || ||||| |||||| | | ||||||||| Sbjct 86220308 AGTTGTTTTCCAGCAAAAATCAATCTTTGTTGGTCTGGTGGG-ATTCCTTCTTTGTCCTG 86220250 Query 39195 GATTTTCTGTTTGAGCGTCGCCACCGTATCGCTCGA---CTCCACGTCCACCGTGATACT 39251 || || ||| | | | | ||||| ||| |||||| |||| || || | Sbjct 86220249 AATCTTGGCTTTCACATTATCAATGGTATC---CGAACTCTCCACCTCCAAGGTAATTGT 86220193 Query 39252 TTTTCCCGTCAGCGTTTTAACAAAGATTTGCAT 39284 ||||| || || ||||| |||||||||||||| Sbjct 86220192 CTTTCCAGTGAGAGTTTTGACAAAGATTTGCAT 86220160 >seq6 Length=121339338 Score = 84.2 bits (92), Expect = 2e-11 Identities = 157/231 (68%), Gaps = 0/231 (0%) Strand=Plus/Plus Query 39058 CCTCCTCTTAAGCGTAACACCAAATGTAGCGTGCTCTCTTTTTGTATATTATAATCGGCA 39117 ||||| || | || | ||| | ||| || ||| || || || || || || ||||| Sbjct 51785663 CCTCCCCTAAGACGGAGCACGAGATGGAGGGTGGATTCCTTCTGGATGTTGTAGTCGGCT 51785722 Query 39118 AGTGTTCGTTCGTCATCAAGCTGTTTGCCCGCAAATATAAGACGCTGCTGGTCGGTGGGC 39177 | || || |||| || ||||| || || ||||| || || ||||| ||||||| || Sbjct 51785723 AAGGTGCGGCCGTCCTCGAGCTGCTTTCCGGCAAAGATGAGGCGCTGTTGGTCGGGTGGG 51785782 Query 39178 ACGCTCTCTTTGTCCATGATTTTCTGTTTGAGCGTCGCCACCGTATCGCTCGACTCCACG 39237 | || || ||||| ||| || ||||| | | | || ||| ||||| || Sbjct 51785783 ATGCCTTCCTTGTCTTGGATCTTGGCTTTGACATTGTCGATGGTGTCGGAAGACTCAACC 51785842 Query 39238 TCCACCGTGATACTTTTTCCCGTCAGCGTTTTAACAAAGATTTGCATCTTT 39288 || | || || | || ||||| || ||||| || ||||||||||||||| Sbjct 51785843 TCTAGGGTTATGGTCTTCCCCGTTAGGGTTTTGACGAAGATTTGCATCTTT 51785893 >seq10 Length=114683840 Score = 82.4 bits (90), Expect = 7e-11 Identities = 138/197 (70%), Gaps = 2/197 (1%) Strand=Plus/Plus Query 39093 CTCTTTTTGTATATTATAATCGGCAAGTGTTCGTTCGTCATCAAGCTGTTTGCCCGCAAA 39152 ||| ||||| || || |||||||| | || || |||| ||||||||||| || || || Sbjct 64671491 CTCCTTTTGGATGTTGTAATCGGCCAAGGTCCGGCCGTCCTCAAGCTGTTTTCCGGCGAA 64671550 Query 39153 TATAAGACGCTGCTGGTCGGTGGGCACGCTCTCTTTGTCCATGATTTTCTGTTTGAGCGT 39212 || |||||||||||||| | || | || || || || |||||| || | ||| Sbjct 64671551 GATCAGACGCTGCTGGTCTGGAGGGATGCCTTCCTTATCTTGGATTTTGGCCTTCA-CGT 64671609 Query 39213 CG-CCACCGTATCGCTCGACTCCACGTCCACCGTGATACTTTTTCCCGTCAGCGTTTTAA 39271 | | | ||| ||| ||| || || | ||||| | || || || || || |||| Sbjct 64671610 TGTCGATCGTGTCGGAGCTCTCGACCTCGAGAGTGATCGTCTTGCCGGTTAGAGTCTTAA 64671669 Query 39272 CAAAGATTTGCATCTTT 39288 | ||||| ||||||||| Sbjct 64671670 CGAAGATCTGCATCTTT 64671686 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 429150774973547