Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Gossypium_20arboreum_20[refseq_20GCF_5F000612285.1_202015-09-28] 75,419 sequences; 1,694,597,732 total letters Query= NC_030656.1 Length=133492 Score E Sequences producing significant alignments: (Bits) Value seq1 167 2e-36 seq9 143 2e-29 >seq1 Length=147124936 Score = 167 bits (184), Expect = 2e-36 Identities = 507/770 (66%), Gaps = 15/770 (2%) Strand=Plus/Plus Query 4272 ACTCGCTTTTCGAAGAAATTAGTTTTGCCTTCTAACGAAATATTTTCCATAAAATCAAAC 4331 |||| ||| ||||||||||| ||||| |||| || ||||| |||||| ||||||| Sbjct 98686999 ACTCTCTTCTCGAAGAAATTGGTTTTCCCTTGCAATGAAATTAGTTCCATCCAATCAAAA 98687058 Query 4332 GGATTAGTTGCGTTGTAATGTTTTTCACACTTTAGAGCTACAAGCAATCGGTCAGCTACA 4391 || |||| || ||||| ||| || || || |||| | | ||| || || || || Sbjct 98687059 GGGTTAGCCGCATTGTACATTTTGCCATACCCTAAAGCTCCTAACAACCGATCCGCAACG 98687118 Query 4392 AATTCTATATACTGGCTCATGAGTTCGCAGTTAATTCCAATTAAT-CTCACAGGTAGCGC 4450 || || || || || ||||| | || | || || |||| ||| | || ||| || || Sbjct 98687119 AACTCAATGTATTGACTCATCAACTCACCATTCATCCCAACTAACGCGCA-AGGAAGAGC 98687177 Query 4451 GTATGTCAAAAACTCTTGTTCTATAGTTACGGCTTCTGTGATTATATCTTTTATTTTATC 4510 || | |||||| |||||| || || || | | ||| | || | || Sbjct 98687178 GTCGCATACAAACTCCCTCTCTATATACACCGCATCACTCACTATTCCCTTCACGCGCTC 98687237 Query 4511 TTTAGATGGTTTATTTACT-AAGTATCCAA-ACAATAAACACGCAAAATCACAATGCAAA 4568 || | | | || | ||| ||| | | ||| || || ||||| || ||||| | | Sbjct 98687238 TTCACTTAGCTT--TGACTGAAGGAGAGAGTACAGCAAGCAAGCAAAGTCGCAATGGAGA 98687295 Query 4569 CCTTCGTCTCTGCTAATCAGTTCGTTAGAAAACGTTAATCCGGGCATTAAACCTCTCTTT 4628 ||||| |||| |||| ||||| || || |||||||| |||||||| || | |||| Sbjct 98687296 CCTTCATCTCGAGAGATCAACTCGTTTGAGAAAGTTAATCCAGGCATTAACCCGCGCTTT 98687355 Query 4629 TTAAGCCAAAATATAGCG--GCAAATGACCCAGAAAAGAATATGCCTTCTACGGCGGCAA 4686 || | ||||||||| ||| | || || | |||||| |||||||||||||| || | Sbjct 98687356 TTTAACCAAAATATCGCGCAGAAACTGCCGGAGAAAA--ATATGCCTTCTACGCAAGCGA 98687413 Query 4687 ACGCTACTAATCGGGACCCGAACGAGCTGGCTTTGTCTTTAATCCATTTTAATGCCCAGT 4746 | || | ||| | | | | | |||| | | | | |||||||| || ||||| | Sbjct 98687414 AAGCGATTAACC--GTTCGGCAAAAGCT-TCGCCGCCGTCGATCCATTTGAAAGCCCAAT 98687470 Query 4747 TAGCTTTTTTCTTAACGCACGGAATTGTGTATATAGCGTTAAATAATTTACTTTTTTCAA 4806 |||||||| |||||||| | || | |||||| || | ||||||| Sbjct 98687471 CGGCTTTTTTAGCCACGCACGGCACCGTTTCAGTAGCGTGGAAGAGGCGGTTTTTTTCGG 98687530 Query 4807 ATGGGTCTTGAATATAAGTGTCTATTAGTAGGCTATACATTTCAGAATGTATATTTTCTA 4866 | |||| |||||||| || | || || |||||||| ||||| || ||||| || | Sbjct 98687531 TGGCATCTTTGATATAAGTTTCGAGGAGGAGACTATACATCTCAGAGTGGATATTCTCGA 98687590 Query 4867 TAGCAATCTGAAATCCGTAAAA-GCATCTAGCTTCTGTTACTTGAACTTCGTTACAAAAT 4925 | || || || ||||| ||||| ||| | || |||| | ||| || || || || Sbjct 98687591 TGGCGATTTGGAATCCATAAAACGCA-CGCGCCTCTGCGATTTGGACCTCTTTCATGAAG 98687649 Query 4926 CTTTCTACTAAGTTTTCGTTTACTATACCGTCACTGGCTGCAAAAAACGCCAAAACATGA 4985 | | | | |||||| || || || || || || || || || | |||||| Sbjct 98687650 CGAACGGCGAGATTTTCGAGGACGATGCCATCGGATGCGGCGAAGAAGGCAAGGACATGA 98687709 Query 4986 GATATAAAGTACTGTTCGTCAGGCTTAAGTTTTTTCCAGTGGGGCAAATC 5035 || |||| ||||||| | |||| |||| |||||| || | ||| Sbjct 98687710 CTGATGAAGTGGCGTTCGTCGGCGGTAAGATTTTGCCAGTGTGGAAGATC 98687759 >seq9 Length=96604005 Score = 143 bits (158), Expect = 2e-29 Identities = 550/853 (64%), Gaps = 13/853 (2%) Strand=Plus/Minus Query 4272 ACTCGCTTTTCGAAGAAATTAGTTTTGCCTTCTAACGAAATATTTTCCATAAAATCAAAC 4331 |||| || ||||||||||| ||||| |||| ||||| || |||||| ||||||| Sbjct 49336666 ACTCTTTTCTCGAAGAAATTGGTTTTCCCTTGCAACGATATCAGTTCCATCCAATCAAAT 49336607 Query 4332 GGATTAGTTGCGTTGTAATGTTTTTCACACTTTAGAGCTACAAGCAATCGGTCAGCTACA 4391 || || ||||||| ||| | || || ||| | | ||| || || ||||| Sbjct 49336606 GGGTTGACCACGTTGTACATCTTTCCGTACCCTAACGCTCCCAACAACCGATCCGCTACG 49336547 Query 4392 AATTCTATATACTGGCTCATGAGTTCGCAGTTAATTCCAATTAATCTCACAGGT-AGCGC 4450 || || || ||||| ||||| | |||| ||| || |||| || | | |||| || || Sbjct 49336546 AACTCGATGTACTGACTCATTAACTCGCCGTTCATCCCAACCAA-CGCGCAGGGCAGAGC 49336488 Query 4451 GTATGTCAAA--AACTCTTGTTCTATAGTTACGGCTTCTGTGATTATATCTTTTATTTTA 4508 || || | ||||| ||||| || || || | | ||| || | | Sbjct 49336487 --ATCGCATACGAACTCCCTCTCTATGTCCACCGCGTCCCTTACTATCCCTCTCACGCGT 49336430 Query 4509 TCTTTAGATGGTTTATTTACTAAGTATCCAA-ACAATAAACACGCAAAATCACAATGCAA 4567 |||| | | || | || || | | ||| || || || |||||||| || | Sbjct 49336429 TCTTCACTCAGCTT-TGACCTGAGGAGAGAGTACAGCAAGCAAGCGAAATCACAGTGGAG 49336371 Query 4568 ACCTTCGTCTCTGCTAATCAGTTCGTTAGAAAACGTTAATCCGGGCATTAAACCTCTCTT 4627 |||||| |||| || | ||||| || || ||||||||||||||||| || ||||| Sbjct 49336370 ACCTTCATCTCGTGAGATTAACTCGTTTGAGAAAGTTAATCCGGGCATTAACCCCCTCTT 49336311 Query 4628 TTTAAGCCAAAATATAGCGGCAAATGACCCAGAAAAGAATATGCCTTCTACGGCGGCAAA 4687 ||| | ||||||||| || || || || || || || || |||||| ||||| Sbjct 49336310 TTTTAACCAAAATATGGCACAGAAACTTCCGGAGAAAAAGATCCCCTCTACGCAAGCAAA 49336251 Query 4688 CGCTACTAATCGGGACCCGAACGAGCTGGCTTTGTCTTTAATCCATTTTAATGCCCAGTT 4747 || | ||| || |||| | | || | | | |||||||| | ||||| | Sbjct 49336250 AGCGATTAACCGTTCGGCGAAAG---TTTCTCCGCCGTCGATCCATTTCATAGCCCACTC 49336194 Query 4748 AGCTTTTTTCTTAACGCACGGAATTGTGTATATAGCGTTAAATAATTTACTTTTTTCAAA 4807 |||||||| || ||||| | || | || ||| || | | ||||| Sbjct 49336193 GGCTTTTTTAGCCACACACGGCACCGTCTCGATGGCGCGGAAAAGACGGTTCTTTTCGTC 49336134 Query 4808 TGGGTCTTGAATATAAGTGTCTATTAGTAGGCTATACATTTCAGAATGTATATTTTCTAT 4867 | |||| || ||||| || | || || || ||||| || || || |||||||| || Sbjct 49336133 GGAATCTTTTATGTAAGTCTCGAGAAGGAGACTGTACATCTCGGAGTGGATATTTTCGAT 49336074 Query 4868 AGCAATCTGAAATCCGT-AAAAGCATCTAGCTTCTGTTACTTGAACTTCGTTACAAAATC 4926 ||| || || || || | ||||||| | || || | | ||| || || || || | Sbjct 49336073 AGCGATTTGGAAACCATAAAAAGCA-CGCGCCTCGGAGATTTGGACCTCTTTCATGAACC 49336015 Query 4927 TTTCTACTAAGTTTTCGTTTACTATACCGTCACTGGCTGCAAAAAACGCCAAAACATGAG 4986 | | | ||| || ||||| || || ||| |||||||| || | ||| ||| Sbjct 49336014 GAACAGCAAGGTTCTCAAGGACTATGCCATCGGAGGCGGCAAAAAAGGCGAGAACGTGAC 49335955 Query 4987 ATATAAAGTACTGTTCGTCAGGCTTAAGTTTTTTCCAGTGGGGCAAATCTTTAGTTAAAT 5046 || |||| || ||||||| | || || |||||| | | | | || | || Sbjct 49335954 TAATGAAGTGGTGCTCGTCAGCGGTGAGAGCTTCCCAGTGACGAAGAACGGAAGACAGAT 49335895 Query 5047 CAACTTCTTCAACAGTCCAAAACGACGCTTCCGCTTTTTTGTACATAGACCAAATATCAG 5106 | ||||| || | ||||||||||||||||| ||||| |||||||| ||| | || | Sbjct 49335894 CGACTTCCTCTGCGGTCCAAAACGACGCTTCGGCTTTCTTGTACATTTCCCATACTTCTG 49335835 Query 5107 GATACTGAATCGG 5119 | || || ||||| Sbjct 49335834 GGTATTGGATCGG 49335822 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 426657069219527