Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Gossypium_20arboreum_20[refseq_20GCF_5F000612285.1_202015-09-28] 75,419 sequences; 1,694,597,732 total letters Query= NC_031033.1 Length=217124 Score E Sequences producing significant alignments: (Bits) Value seq9 187 3e-42 seq1 181 1e-40 seq2 105 9e-18 seq4 93.3 6e-14 >seq9 Length=96604005 Score = 187 bits (206), Expect = 3e-42 Identities = 566/870 (65%), Gaps = 6/870 (1%) Strand=Plus/Minus Query 47850 TTTTGATATTCACCCACACGTTTCTCGAAAAAATTAGTTTTGCCTTCCAATGATATATTT 47909 |||||||| || || || | ||||||||| ||||| ||||| |||| ||| ||||| | Sbjct 49336681 TTTTGATACTCTCCAACTCTTTTCTCGAAGAAATTGGTTTTCCCTTGCAACGATATCAGT 49336622 Query 47910 TCCATAAAATCAAATGGATTAACTGCATTATAAAtttttttAAATCCTAATTCTGAAATC 47969 ||||| |||||||||| || || | || || || ||| | ||||| || | | Sbjct 49336621 TCCATCCAATCAAATGGGTTGACCACGTTGTACATCTTTCCGTACCCTAACGCTCCCAAC 49336562 Query 47970 AGTCTATCTGCAACGAATTCTATATATCTTTTCATCATTTCACAATTCATTCCTATAAGT 48029 | | ||| || ||||| || || || |||| | || | ||||| || | | Sbjct 49336561 AACCGATCCGCTACGAACTCGATGTACTGACTCATTAACTCGCCGTTCATCCCAACCAAC 49336502 Query 48030 TTAACTGGTAGAGCCTC-CGTAAGAAACTCTTGTTCGATAGTGACAGCATCCACTATTAT 48088 || ||||| || | || ||| ||| || || || || ||| || ||| Sbjct 49336501 GCGCAGGGCAGAGCATCGCATACGAA-CTCCCTCTCTATGTCCACCGCGTCCCTTACTAT 49336443 Query 48089 CGATGTTACCGTTTCCTCACTTGG--TGGATACAACAAATGTTTAAACATTAAACATGCA 48146 | | | || ||| ||||| | | || | | | || || || || || Sbjct 49336442 CCCTCTCACGCGTTCTTCACTCAGCTTTGACCTGAGGAGAGAGTA--CAGCAAGCAAGCG 49336385 Query 48147 AAATCACAATGAAGACCTTCATCTCTACTAATTAATTCGTTAGAAAATGTGAGACCGGGC 48206 |||||||| || ||||||||||||| ||||| ||||| || || || | |||||| Sbjct 49336384 AAATCACAGTGGAGACCTTCATCTCGTGAGATTAACTCGTTTGAGAAAGTTAATCCGGGC 49336325 Query 48207 ATTAGTCCACGTTTTTTGAGCCAAAATATTGCCGCGAAAGATCCAGAAAAGAATATGCCT 48266 |||| || | ||||| | ||||||||| || |||| ||| || || || || || Sbjct 49336324 ATTAACCCCCTCTTTTTTAACCAAAATATGGCACAGAAACTTCCGGAGAAAAAGATCCCC 49336265 Query 48267 TCTACGGCCGCAAATGCGGTAAGTCTCTCTCCGTAACTGGCTTCGTTGTGTATCCACCGT 48326 |||||| ||||| ||| | | | || || || | || || || ||||| Sbjct 49336264 TCTACGCAAGCAAAAGCGATTAACCGTTCGGCGAAAGTTTCTCCGCCGTCGATCCATTTC 49336205 Query 48327 TGTGCCCAATCAGCCTTCTTCTTTACACAAGGCATTGTTTCTATAGCATTAAAGAGAAAG 48386 ||||| || || || || ||||| |||| || || || || || ||| | Sbjct 49336204 ATAGCCCACTCGGCTTTTTTAGCCACACACGGCACCGTCTCGATGGCGCGGAAAAGACGG 49336145 Query 48387 tttttttCATTGCTATCTTTAACGTAAGTATCTATTAAAAGACTATACATTTCGGAGTGA 48446 || ||||| | | |||||| | |||||| || | | ||||| ||||| |||||||| Sbjct 49336144 TTCTTTTCGTCGGAATCTTTTATGTAAGTCTCGAGAAGGAGACTGTACATCTCGGAGTGG 49336085 Query 48447 ATATTTTCAATTGCCATCTGAAATCCGTAAAAACATCTCGCTTCTGTGATCTGTACCTCC 48506 |||||||| || || || || || || |||||| | ||| || | ||| || ||||| Sbjct 49336084 ATATTTTCGATAGCGATTTGGAAACCATAAAAAGCACGCGCCTCGGAGATTTGGACCTCT 49336025 Query 48507 GTACAAAATCGTTCAGCCAAATTCTCATTTACTATTCCATCACTAGCAGCAAAAAATGCT 48566 | || || |||| | |||||| ||||| ||||| || |||||||| || Sbjct 49336024 TTCATGAACCGAACAGCAAGGTTCTCAAGGACTATGCCATCGGAGGCGGCAAAAAAGGCG 49335965 Query 48567 AATACATGTTTAATAAAATATTTTTCGTTGGAAGTCAGTTTATTCCAGTCATTGATATCT 48626 | || || |||| || | | |||| | || || | ||||| | | | | Sbjct 49335964 AGAACGTGACTAATGAAGTGGTGCTCGTCAGCGGTGAGAGCTTCCCAGTGACGAAGAACG 49335905 Query 48627 TTTGATATATCTACTTCTTCAGCTGTCCAAAATGATGCCTCTGCTTTTTTATACATATTC 48686 || | ||| ||||| || || |||||||| || || || ||||| || ||||| | | Sbjct 49335904 GAAGACAGATCGACTTCCTCTGCGGTCCAAAACGACGCTTCGGCTTTCTTGTACATTTCC 49335845 Query 48687 CATATATCACTGTATTGGATTGGGAAAATA 48716 |||| || ||||||||| ||||| ||| Sbjct 49335844 CATACTTCTGGGTATTGGATCGGGAACATA 49335815 >seq1 Length=147124936 Score = 181 bits (200), Expect = 1e-40 Identities = 447/668 (67%), Gaps = 24/668 (4%) Strand=Plus/Plus Query 47850 TTTTGATATTCACCCACACGTTTCTCGAAAAAATTAGTTTTGCCTTCCAATGATATATTT 47909 || ||||| || || || | |||||||| ||||| ||||| |||| |||||| || | Sbjct 98686984 TTCTGATACTCTCCAACTCTCTTCTCGAAGAAATTGGTTTTCCCTTGCAATGAAATTAGT 98687043 Query 47910 TCCATAAAATCAAATGGATTAACTGCATTATAAAtttttttAAATCCTAATTCTGAAATC 47969 ||||| ||||||| || ||| | ||||| || ||||| | | ||||| || | | Sbjct 98687044 TCCATCCAATCAAAAGGGTTAGCCGCATTGTACATTTTGCCATACCCTAAAGCTCCTAAC 98687103 Query 47970 AGTCTATCTGCAACGAATTCTATATATCTTTTCATCATTTCACAATTCATTCCTA-TAA- 48027 | | ||| |||||||| || || ||| |||||| |||| |||||| || | ||| Sbjct 98687104 AACCGATCCGCAACGAACTCAATGTATTGACTCATCAACTCACCATTCATCCCAACTAAC 98687163 Query 48028 GTTTAACTGGTAGAGCCTCCGTAAGAAACTCTTGTTCGATAGTGACAGCATC---CACTA 48084 | || || ||||| || | |||||| || ||| || ||||| ||||| Sbjct 98687164 GCGCAA--GGAAGAGCGTCGCATACAAACTCCCTCTCTATATACACCGCATCACTCACTA 98687221 Query 48085 TTATCGATGTTACCGTTTCCTCACTTGG--TGGATACAACAAATGTTTAAACATTAAACA 48142 || | | || || |||||| | | || || | | || || || || Sbjct 98687222 TTCCCT---TCACGCGCTCTTCACTTAGCTTTGACTGAAGGAGAGAGTA--CAGCAAGCA 98687276 Query 48143 TGCAAAATCACAATGAAGACCTTCATCTCTACTAATTAATTCGTTAGAAAATGTGAGACC 48202 ||||| || ||||| ||||||||||||| | || || ||||| || || || | || Sbjct 98687277 AGCAAAGTCGCAATGGAGACCTTCATCTCGAGAGATCAACTCGTTTGAGAAAGTTAATCC 98687336 Query 48203 GGGCATTAGTCCACGTTTTTTGAGCCAAAATATTGCCGCGAAAGATCCAGAAAAGAATAT 48262 ||||||| || || ||||| | ||||||||| || |||| || || || ||||| Sbjct 98687337 AGGCATTAACCCGCGCTTTTTTAACCAAAATATCGCGCAGAAACTGCCGGAGAAAAATAT 98687396 Query 48263 GCCTTCTACGGCCGCAAATGCGGTAAGTCTCTCTCCGTAACTGGCTT---CGTTGTGTAT 48319 |||||||||| || || ||| | | | || | || |||| || || || Sbjct 98687397 GCCTTCTACGCAAGCGAAAGCGATTAACCGTTCGGCAAAA---GCTTCGCCGCCGTCGAT 98687453 Query 48320 CCACCGTTG--TGCCCAATCAGCCTTCTTCTTTACACAAGGCATTGTTTCTATAGCATTA 48377 ||| ||| |||||||| || || || || || |||| ||||| |||| | Sbjct 98687454 CCA--TTTGAAAGCCCAATCGGCTTTTTTAGCCACGCACGGCACCGTTTCAGTAGCGTGG 98687511 Query 48378 AAGAGAAAGtttttttCATTGCTATCTTTAACGTAAGTATCTATTAAAAGACTATACATT 48437 ||||| ||||||||| || |||||| | ||||| || | | ||||||||||| Sbjct 98687512 AAGAGGCGGTTTTTTTCGGTGGCATCTTTGATATAAGTTTCGAGGAGGAGACTATACATC 98687571 Query 48438 TCGGAGTGAATATTTTCAATTGCCATCTGAAATCCGTAAAAACATCTCGCTTCTGTGATC 48497 || ||||| ||||| || || || || || ||||| ||||| | ||| |||| ||| Sbjct 98687572 TCAGAGTGGATATTCTCGATGGCGATTTGGAATCCATAAAACGCACGCGCCTCTGCGATT 98687631 Query 48498 TGTACCTC 48505 || ||||| Sbjct 98687632 TGGACCTC 98687639 >seq2 Length=101023042 Score = 105 bits (116), Expect = 9e-18 Identities = 117/156 (75%), Gaps = 0/156 (0%) Strand=Plus/Plus Query 77897 CTCTCTTTCATATTGAGTATATAGCCGTTCAAATTCATCTCCCCAAACATCATCCAATCC 77956 |||||||||||| ||| |||| ||| |||||||| || |||||| ||| ||| ||| Sbjct 61424569 CTCTCTTTCATAATGAATATACAGCTCCTCAAATTCTTCACCCCAACAATCTGCCAGTCC 61424628 Query 77957 AGGGCATTCATTTGGGCACATCAATGACCAGTCACCATCTTCCTTAACTCGTTTCATAAA 78016 || ||||||| || || | |||||||| | |||| || |||| || ||| || Sbjct 61424629 TGGAGATTCATTAGGACAGAATAATGACCACTGCCCATTACTCTGGACTCTTTGCATGAA 61424688 Query 78017 GAGATCAGGTATCCATAGAGCAATAAATAGATCTCG 78052 |||||||| | |||||||||| ||||||||| || Sbjct 61424689 AAGATCAGGCACCCATAGAGCATAAAATAGATCACG 61424724 Score = 93.3 bits (102), Expect = 6e-14 Identities = 153/221 (69%), Gaps = 0/221 (0%) Strand=Plus/Plus Query 78159 CCTCCCTGATCTATATATCTGGCGGTGTTATTATAAACTCTCAACATTGGAATAATACCG 78218 ||||| ||||| | ||| | || |||| ||| | || | || |||||| | ||| || Sbjct 61425054 CCTCCTTGATCAACATAACGAGCAGTGTCATTGAACACCCGCAGCATTGGGACAATGCCA 61425113 Query 78219 TTAGATGTTCCATTTGTTCCAGAAATATAACTTCCACTTGCGCGAATATTACTAATGGAT 78278 |||||||| |||||||||||| ||| ||||| | | || |||||||| || || Sbjct 61425114 TTAGATGTACCATTTGTTCCACGAATGTAACTACTTGTAGCCCGAATATTGTGAACTGAG 61425173 Query 78279 ATCCCTATTCCTCCTGCCATCTTAGATATTAGAGCGCAACGTTTCAATGTATCGTAGATA 78338 | || |||||||| || || |||| ||| || ||||| || || || || Sbjct 61425174 ACACCAATTCCTCCAGCTGATTTGCTGATTATAGCACACTCCTTCAAAGTGTCATATATT 61425233 Query 78339 CCCTCTATACTGTCATCCATCATGTTAAGAAGAAAACAGCT 78379 ||||| ||||| ||||| |||| || | ||| ||||| Sbjct 61425234 CCCTCGATACTATCATCTTTCATACACAGTAAAAAGCAGCT 61425274 Score = 89.7 bits (98), Expect = 7e-13 Identities = 138/197 (70%), Gaps = 0/197 (0%) Strand=Plus/Plus Query 77145 ACTCTACGAGTGTAAATATTACTGGTATATGGTTCCACAGATTCATTGTTTCCCAAAATT 77204 ||||||||| | || ||||| ||||||||||| | | ||||| ||||| | ||| Sbjct 61423094 ACTCTACGACTATAGATATTGGAAGTATATGGTTCAAAGCACTCATTATTTCCAAGAATC 61423153 Query 77205 TGAGCAGTAGAAGCAGTTGGCATAGGTGCCACCAATAAACTATTTCTGAGACCATGTGTT 77264 || ||| || ||||||||||||||||| | ||| | |||||| | ||||| | Sbjct 61423154 TGGCTAGTTGATGCAGTTGGCATAGGTGCTAACAAAAGTGAATTTCTCACTCCATGCTTA 61423213 Query 77265 CTGATTTTATCTTTTAGATATTTCCAATCCCAAAGATCTGAAGGTACAACATCCCAAAGA 77324 || || ||| | ||| ||||| ||||| |||| ||||| |||| |||| | | Sbjct 61423214 GCTATGTTGTCTCTAAGAGCATTCCAGTCCCACAGATTTGAAGCAGTAACACCCCACATA 61423273 Query 77325 TCGTATTGTAGAATTCC 77341 || | || ||||| || Sbjct 61423274 TCTTGCTGGAGAATACC 61423290 Score = 89.7 bits (98), Expect = 7e-13 Identities = 141/201 (70%), Gaps = 6/201 (3%) Strand=Plus/Plus Query 78398 AGTTCCTGCATTAAATAATGTCGGAGATGCATGCGTAAACCATTTTTCAGAAAGTAGATT 78457 |||||| ||||| || | ||| ||||| ||||| ||||||||| ||| ||| | | | Sbjct 61425397 AGTTCCAGCATTGAAAAGTGTGGGAGAAGCATGAGTAAACCATCTTTGAGACATCATGTG 61425456 Query 78458 GTATGTTTCAATAGCTGATTCTATGTCCCATTGATGAATTCCTACCGCTACACGCATCAA 78517 || |||| ||||| || || ||||| | ||||||||| || || || | ||| || Sbjct 61425457 ATAAGTTTTTATAGCAGAATCAATGTCATTCTTATGAATTCCAACTGCAACCCTCATTAA 61425516 Query 78518 CATATGCTGAGGTCTTTC---AACCGTCTTATTATTTATTTTCAACAAGTATGATTTTTC 78574 ||| || || || ||||| |||| || | | | ||| || | ||| || | || Sbjct 61425517 CATGTGTTGGGGCCTTTCTATAACCTTCCCTTGA---ACTTTTAAGAGGTAGGACCTCTC 61425573 Query 78575 CAAAGTTTTAAAACCAAAATA 78595 | ||||| ||||||||||| Sbjct 61425574 AAGGGTTTTGAAACCAAAATA 61425594 >seq4 Length=137675496 Score = 93.3 bits (102), Expect = 6e-14 Identities = 143/204 (70%), Gaps = 0/204 (0%) Strand=Plus/Minus Query 78159 CCTCCCTGATCTATATATCTGGCGGTGTTATTATAAACTCTCAACATTGGAATAATACCG 78218 ||||| ||||| | ||||| || || | ||| | || | || |||||| | ||| || Sbjct 106877164 CCTCCTTGATCAACATATCGAGCAGTATCATTGAACACCCGCAGCATTGGGACAATTCCA 106877105 Query 78219 TTAGATGTTCCATTTGTTCCAGAAATATAACTTCCACTTGCGCGAATATTACTAATGGAT 78278 |||||||| |||||||||||| ||||||||| || | || |||||||| || || Sbjct 106877104 TTAGATGTACCATTTGTTCCACGAATATAACTACCTGTGGCTCGAATATTGTGAACAGAA 106877045 Query 78279 ATCCCTATTCCTCCTGCCATCTTAGATATTAGAGCGCAACGTTTCAATGTATCGTAGATA 78338 | || |||||||| || || || | ||| || ||||| || || || || Sbjct 106877044 ACACCAATTCCTCCAGCTGATTTGCTGATAACAGCACACTCCTTCAAAGTTTCATATATT 106876985 Query 78339 CCCTCTATACTGTCATCCATCATG 78362 || || ||||| ||||| ||||| Sbjct 106876984 CCTTCAATACTATCATCTTTCATG 106876961 Score = 89.7 bits (98), Expect = 7e-13 Identities = 131/182 (72%), Gaps = 4/182 (2%) Strand=Plus/Minus Query 77141 CAATACTCTACGAGTGTAAATATTACTGGTATATGGTTCCACAGATTCATTGTTTCCCAA 77200 ||| ||||| ||| | |||||||| ||||||||| || | ||||||| || || | Sbjct 106879145 CAAAACTCTGCGACTATAAATATTGGAGGTATATGGCTCAAAGCATTCATTATTCCCAAG 106879086 Query 77201 AATTTGAGCAGTAGAAGCAGTTGGCATAGGTGCCACCAATAAACTATTTCTGAGACCATG 77260 ||| ||| ||| |||||||||||||||||||| | ||||| |||||| | |||| Sbjct 106879085 AATCTGACTAGTTGAAGCAGTTGGCATAGGTGCTAACAATAGTGAATTTCTCACTCCAT- 106879027 Query 77261 TGTT--CTGATTTTATCTTTTAGATATTTCCAATCCCAAAGATCTGAAGGTACAACATCC 77318 | || || || | || | ||| |||||||||| || ||||||| |||| || Sbjct 106879026 TCTTGGCT-ATCATGTCCCTAAGAGCAGTCCAATCCCACCGACCTGAAGGAGTAACACCC 106878968 Query 77319 CA 77320 || Sbjct 106878967 CA 106878966 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 694013909672160