Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Gossypium_20barbadense_20[genbank_20GCA_5F001856525.1_202016-11-03]
29,751 sequences; 2,566,742,836 total letters
Query= NC_001132.2
Length=161773
Score E
Sequences producing significant alignments: (Bits) Value
seq29212 156 4e-33
seq22586 107 2e-18
seq28581 84.2 2e-11
>seq29212
Length=358297
Score = 156 bits (172), Expect = 4e-33
Identities = 390/585 (67%), Gaps = 7/585 (1%)
Strand=Plus/Minus
Query 16956 ACATCAGACATGCGAAATCGCAATGTAATCCCTCGTCTCTGCTGATAAGTTCGTTAGAAA 17015
||| || || || || |||||||| | || || |||| ||| | ||||| || |
Sbjct 223231 ACAGCAAGCAAGCAAAGTCGCAATGGAGACCTTCATCTCGAGAGATCAACTCGTTTGAGA 223172
Query 17016 ATGTCAACCCGGGCATCTTTCCTCGTTTCTTTAACCAAAATATCGCGGCGAACGACCCAG 17075
| || || || ||||| || || || ||||||||||||||||| ||| || |
Sbjct 223171 AAGTTAATCCAGGCATTAACCCGCGCTTTTTTAACCAAAATATCGCACAGAAACTGCCGG 223112
Query 17076 AAAAGAATATACCCTCGACGGATGCAAACGCGATTAATCGTTCGGCGTACGTCGCGTCTT 17135
| || ||||| || || ||| | || || |||||||| |||||||| | | || |
Sbjct 223111 AGAAAAATATGCCTTCTACGCAAGCGAAAGCGATTAACCGTTCGGCAAAAGCTTCGCCGC 223052
Query 17136 TGTTACGAATCCATTTCTGCACCCACTCGGCTTTTTGCTTTATGCAATCCATCGTTTCTA 17195
|| || ||||||||| |||| |||||||||| | ||| || ||||||
Sbjct 223051 CGT--CG-ATCCATTTCAAAGCCCAATCGGCTTTTTTAGCCACGCACGGCACCGTTTCAG 222995
Query 17196 TGGCCTTAAATAATTTCTCTTTTTC-CTGTAGGTCGATTATATACGTATCGATGAGTAGG 17254
| || | || | | |||||| || | || | ||||| || |||| ||| ||
Sbjct 222994 TAGCGTGGAAGAGGCGGTTTTTTTCGGTGGA-ATCTTTAATATAAGTTTCGAGGAGGAGA 222936
Query 17255 CTGTACATTTCGGAGTGTATGTTCTCCATGGCTATCTGAAATCCGTAAAA-GCATCGGGC 17313
|| ||||| || ||||| || ||||| ||||| || || ||||| ||||| ||| || ||
Sbjct 222935 CTATACATCTCAGAGTGGATATTCTCGATGGCGATTTGGAATCCATAAAATGCA-CGCGC 222877
Query 17314 TTCCGCTATTTGAACTTCCACGTAGAATCGTTCCGCTAGATTTTCGTTCACGATGCCGTC 17373
||||| ||||| || || ||| || | || |||||||| |||||||| ||
Sbjct 222876 CTCCGCGATTTGGACCTCTTTCATGAAGCGAACAGCGAGATTTTCTAGAACGATGCCATC 222817
Query 17374 GCTCGCGGCGAAAAACGCCAATATATGCTTAATGAAATATTTTTCGTCCGGTGTAAGAAC 17433
| |||||||| || || | | ||| | ||||| | |||||| | |||||
Sbjct 222816 GGATGCGGCGAAGAAGGCAAGGACATGACTGATGAAGTGGCGTTCGTCGGCGTTAAGATT 222757
Query 17434 GCGCCAGTCCTTTAAATCTTTGGATATATCCACTTCTTCGGGGGTCCAAAAACTAGCCAC 17493
|||||| | ||| || | ||| ||||| |||| ||||||||| || |
Sbjct 222756 TTGCCAGTGTGGAAGATCGGAAGAGAGATCAACTTCCTCGGCAGTCCAAAAAGAGGCTTC 222697
Query 17494 TGCCTTTTTATACATATTCCAAATATCATTGTATTGTATGGGGAA 17538
|| || |||||||| | ||| || | |||||| || |||||
Sbjct 222696 GGCTTTCTTATACATTTCCCATATCTGTGGGTATTGGATTGGGAA 222652
>seq22586
Length=877411
Score = 107 bits (118), Expect = 2e-18
Identities = 302/456 (66%), Gaps = 7/456 (2%)
Strand=Plus/Plus
Query 16956 ACATCAGACATGCGAAATCGCAATGTAATCCCTCGTCTCTGCTGATAAGTTCGTTAGAAA 17015
||| || || |||||||| || || | || || |||| ||| | ||||| || |
Sbjct 443810 ACAGCAAGCAAGCGAAATCACAGTGGAGACCTTCATCTCGTGAGATTAACTCGTTTGAGA 443869
Query 17016 ATGTCAACCCGGGCATCTTTCCTCGTTTCTTTAACCAAAATATCGCGGCGAACGACCCAG 17075
| || || |||||||| || | || |||||||||||||| || ||| || |
Sbjct 443870 AAGTTAATCCGGGCATTAACCCCCTCTTTTTTAACCAAAATATGGCACAGAAACTTCCGG 443929
Query 17076 AAAAGAATATACCCTCGACGGATGCAAACGCGATTAATCGTTCGGCGTACGTCGCGTCTT 17135
| || || || ||||| ||| | ||||| |||||||| ||||||||| | || | |
Sbjct 443930 AGAAAAAGATCCCCTCTACGCAAGCAAAAGCGATTAACCGTTCGGCGAAAGTTTCTCCGC 443989
Query 17136 TGTTACGAATCCATTTCTGCACCCACTCGGCTTTTTGCTTTATGCAATCCATCGTTTCTA 17195
|| || ||||||||| ||||||||||||||| | || || ||| || |
Sbjct 443990 CGT--CG-ATCCATTTCATAGCCCACTCGGCTTTTTTAGCCACACACGGCACCGTCTCGA 444046
Query 17196 TGGC-CTTAAATAATTTCTCTTTTTCCTGTAGGTCGATTATATACGTATCGATGAGTAGG 17254
|||| | ||| | || ||||| | || |||| || || |||| || ||
Sbjct 444047 TGGCGCGGAAAAGACGGTTC-TTTTCATCGGAATCTTTTATGTAAGTCTCGAGAAGGAGA 444105
Query 17255 CTGTACATTTCGGAGTGTATGTTCTCCATGGCTATCTGAAATCCGT-AAAAGCATCGGGC 17313
|||||||| |||||||| || || || || || || || || || | ||||||| || ||
Sbjct 444106 CTGTACATCTCGGAGTGGATATTTTCGATAGCGATTTGGAAACCATAAAAAGCA-CGCGC 444164
Query 17314 TTCCGCTATTTGAACTTCCACGTAGAATCGTTCCGCTAGATTTTCGTTCACGATGCCGTC 17373
|| | || || || || ||| || | || || || || || ||||| ||
Sbjct 444165 CTCGGAGATCTGGACCTCTTTCATGAACCGAACAGCAAGGTTCTCAAGGACTATGCCATC 444224
Query 17374 GCTCGCGGCGAAAAACGCCAATATATGCTTAATGAA 17409
| ||||||||||| || | | || |||||||
Sbjct 444225 GGAGGCGGCGAAAAAGGCGAGAACGTGACTAATGAA 444260
Score = 107 bits (118), Expect = 2e-18
Identities = 302/456 (66%), Gaps = 7/456 (2%)
Strand=Plus/Plus
Query 16956 ACATCAGACATGCGAAATCGCAATGTAATCCCTCGTCTCTGCTGATAAGTTCGTTAGAAA 17015
||| || || |||||||| || || | || || |||| ||| | ||||| || |
Sbjct 446945 ACAGCAAGCAAGCGAAATCACAGTGGAGACCTTCATCTCGTGAGATTAACTCGTTTGAGA 447004
Query 17016 ATGTCAACCCGGGCATCTTTCCTCGTTTCTTTAACCAAAATATCGCGGCGAACGACCCAG 17075
| || || |||||||| || | || |||||||||||||| || ||| || |
Sbjct 447005 AAGTTAATCCGGGCATTAACCCCCTCTTTTTTAACCAAAATATGGCACAGAAACTTCCGG 447064
Query 17076 AAAAGAATATACCCTCGACGGATGCAAACGCGATTAATCGTTCGGCGTACGTCGCGTCTT 17135
| || || || ||||| ||| | ||||| |||||||| ||||||||| | || | |
Sbjct 447065 AGAAAAAGATCCCCTCTACGCAAGCAAAAGCGATTAACCGTTCGGCGAAAGTTTCTCCGC 447124
Query 17136 TGTTACGAATCCATTTCTGCACCCACTCGGCTTTTTGCTTTATGCAATCCATCGTTTCTA 17195
|| || ||||||||| ||||||||||||||| | || || ||| || |
Sbjct 447125 CGT--CG-ATCCATTTCATAGCCCACTCGGCTTTTTTAGCCACACACGGCACCGTCTCGA 447181
Query 17196 TGGC-CTTAAATAATTTCTCTTTTTCCTGTAGGTCGATTATATACGTATCGATGAGTAGG 17254
|||| | ||| | || ||||| | || |||| || || |||| || ||
Sbjct 447182 TGGCGCGGAAAAGACGGTTC-TTTTCATCGGAATCTTTTATGTAAGTCTCGAGAAGGAGA 447240
Query 17255 CTGTACATTTCGGAGTGTATGTTCTCCATGGCTATCTGAAATCCGT-AAAAGCATCGGGC 17313
|||||||| |||||||| || || || || || || || || || | ||||||| || ||
Sbjct 447241 CTGTACATCTCGGAGTGGATATTTTCGATAGCGATTTGGAAACCATAAAAAGCA-CGCGC 447299
Query 17314 TTCCGCTATTTGAACTTCCACGTAGAATCGTTCCGCTAGATTTTCGTTCACGATGCCGTC 17373
|| | || || || || ||| || | || || || || || ||||| ||
Sbjct 447300 CTCGGAGATCTGGACCTCTTTCATGAACCGAACAGCAAGGTTCTCAAGGACTATGCCATC 447359
Query 17374 GCTCGCGGCGAAAAACGCCAATATATGCTTAATGAA 17409
| ||||||||||| || | | || |||||||
Sbjct 447360 GGAGGCGGCGAAAAAGGCGAGAACGTGACTAATGAA 447395
>seq28581
Length=397638
Score = 84.2 bits (92), Expect = 2e-11
Identities = 151/218 (69%), Gaps = 7/218 (3%)
Strand=Plus/Plus
Query 16956 ACATCAGACATGCGAAATCGCAATGTAATCCCTCGTCTCTGCTGATAAGTTCGTTAGAAA 17015
||| || || || || |||||||| | || || |||| ||| | ||||| || |
Sbjct 34075 ACAGCAAGCAAGCAAAGTCGCAATGGAGACCTTCATCTCGAGAGATCAACTCGTTTGAGA 34134
Query 17016 ATGTCAACCCGGGCATCTTTCCTCGTTTCTTTAACCAAAATATCGCGGCGAACGACCCAG 17075
| || || || ||||| || || || |||||||||||||||||| ||| || |
Sbjct 34135 AAGTTAATCCAGGCATTAACCCGCGCTTTTTTAACCAAAATATCGCGCAGAAACTGCCGG 34194
Query 17076 AAAAGAATATACCCTCGACGGATGCAAACGCGATTAATCGTTCGGCGTA--CGTCGCGTC 17133
| || ||||| || || ||| | || || |||||||| |||||||| | | ||||| |
Sbjct 34195 AGAAAAATATGCCTTCTACGCAAGCGAAAGCGATTAACCGTTCGGCAAAAGCTTCGCGGC 34254
Query 17134 TTTGTTACGAATCCATTTCTGCACCCACTCGGCTTTTT 17171
| || |||||||| |||| ||||||||||
Sbjct 34255 CGT----CG-ATCCATTTGAAAGCCCAATCGGCTTTTT 34287
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 517353131260680
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |