Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Gossypium_20barbadense_20[genbank_20GCA_5F001856525.1_202016-11-03] 29,751 sequences; 2,566,742,836 total letters Query= NC_001132.2 Length=161773 Score E Sequences producing significant alignments: (Bits) Value seq29212 156 4e-33 seq22586 107 2e-18 seq28581 84.2 2e-11 >seq29212 Length=358297 Score = 156 bits (172), Expect = 4e-33 Identities = 390/585 (67%), Gaps = 7/585 (1%) Strand=Plus/Minus Query 16956 ACATCAGACATGCGAAATCGCAATGTAATCCCTCGTCTCTGCTGATAAGTTCGTTAGAAA 17015 ||| || || || || |||||||| | || || |||| ||| | ||||| || | Sbjct 223231 ACAGCAAGCAAGCAAAGTCGCAATGGAGACCTTCATCTCGAGAGATCAACTCGTTTGAGA 223172 Query 17016 ATGTCAACCCGGGCATCTTTCCTCGTTTCTTTAACCAAAATATCGCGGCGAACGACCCAG 17075 | || || || ||||| || || || ||||||||||||||||| ||| || | Sbjct 223171 AAGTTAATCCAGGCATTAACCCGCGCTTTTTTAACCAAAATATCGCACAGAAACTGCCGG 223112 Query 17076 AAAAGAATATACCCTCGACGGATGCAAACGCGATTAATCGTTCGGCGTACGTCGCGTCTT 17135 | || ||||| || || ||| | || || |||||||| |||||||| | | || | Sbjct 223111 AGAAAAATATGCCTTCTACGCAAGCGAAAGCGATTAACCGTTCGGCAAAAGCTTCGCCGC 223052 Query 17136 TGTTACGAATCCATTTCTGCACCCACTCGGCTTTTTGCTTTATGCAATCCATCGTTTCTA 17195 || || ||||||||| |||| |||||||||| | ||| || |||||| Sbjct 223051 CGT--CG-ATCCATTTCAAAGCCCAATCGGCTTTTTTAGCCACGCACGGCACCGTTTCAG 222995 Query 17196 TGGCCTTAAATAATTTCTCTTTTTC-CTGTAGGTCGATTATATACGTATCGATGAGTAGG 17254 | || | || | | |||||| || | || | ||||| || |||| ||| || Sbjct 222994 TAGCGTGGAAGAGGCGGTTTTTTTCGGTGGA-ATCTTTAATATAAGTTTCGAGGAGGAGA 222936 Query 17255 CTGTACATTTCGGAGTGTATGTTCTCCATGGCTATCTGAAATCCGTAAAA-GCATCGGGC 17313 || ||||| || ||||| || ||||| ||||| || || ||||| ||||| ||| || || Sbjct 222935 CTATACATCTCAGAGTGGATATTCTCGATGGCGATTTGGAATCCATAAAATGCA-CGCGC 222877 Query 17314 TTCCGCTATTTGAACTTCCACGTAGAATCGTTCCGCTAGATTTTCGTTCACGATGCCGTC 17373 ||||| ||||| || || ||| || | || |||||||| |||||||| || Sbjct 222876 CTCCGCGATTTGGACCTCTTTCATGAAGCGAACAGCGAGATTTTCTAGAACGATGCCATC 222817 Query 17374 GCTCGCGGCGAAAAACGCCAATATATGCTTAATGAAATATTTTTCGTCCGGTGTAAGAAC 17433 | |||||||| || || | | ||| | ||||| | |||||| | ||||| Sbjct 222816 GGATGCGGCGAAGAAGGCAAGGACATGACTGATGAAGTGGCGTTCGTCGGCGTTAAGATT 222757 Query 17434 GCGCCAGTCCTTTAAATCTTTGGATATATCCACTTCTTCGGGGGTCCAAAAACTAGCCAC 17493 |||||| | ||| || | ||| ||||| |||| ||||||||| || | Sbjct 222756 TTGCCAGTGTGGAAGATCGGAAGAGAGATCAACTTCCTCGGCAGTCCAAAAAGAGGCTTC 222697 Query 17494 TGCCTTTTTATACATATTCCAAATATCATTGTATTGTATGGGGAA 17538 || || |||||||| | ||| || | |||||| || ||||| Sbjct 222696 GGCTTTCTTATACATTTCCCATATCTGTGGGTATTGGATTGGGAA 222652 >seq22586 Length=877411 Score = 107 bits (118), Expect = 2e-18 Identities = 302/456 (66%), Gaps = 7/456 (2%) Strand=Plus/Plus Query 16956 ACATCAGACATGCGAAATCGCAATGTAATCCCTCGTCTCTGCTGATAAGTTCGTTAGAAA 17015 ||| || || |||||||| || || | || || |||| ||| | ||||| || | Sbjct 443810 ACAGCAAGCAAGCGAAATCACAGTGGAGACCTTCATCTCGTGAGATTAACTCGTTTGAGA 443869 Query 17016 ATGTCAACCCGGGCATCTTTCCTCGTTTCTTTAACCAAAATATCGCGGCGAACGACCCAG 17075 | || || |||||||| || | || |||||||||||||| || ||| || | Sbjct 443870 AAGTTAATCCGGGCATTAACCCCCTCTTTTTTAACCAAAATATGGCACAGAAACTTCCGG 443929 Query 17076 AAAAGAATATACCCTCGACGGATGCAAACGCGATTAATCGTTCGGCGTACGTCGCGTCTT 17135 | || || || ||||| ||| | ||||| |||||||| ||||||||| | || | | Sbjct 443930 AGAAAAAGATCCCCTCTACGCAAGCAAAAGCGATTAACCGTTCGGCGAAAGTTTCTCCGC 443989 Query 17136 TGTTACGAATCCATTTCTGCACCCACTCGGCTTTTTGCTTTATGCAATCCATCGTTTCTA 17195 || || ||||||||| ||||||||||||||| | || || ||| || | Sbjct 443990 CGT--CG-ATCCATTTCATAGCCCACTCGGCTTTTTTAGCCACACACGGCACCGTCTCGA 444046 Query 17196 TGGC-CTTAAATAATTTCTCTTTTTCCTGTAGGTCGATTATATACGTATCGATGAGTAGG 17254 |||| | ||| | || ||||| | || |||| || || |||| || || Sbjct 444047 TGGCGCGGAAAAGACGGTTC-TTTTCATCGGAATCTTTTATGTAAGTCTCGAGAAGGAGA 444105 Query 17255 CTGTACATTTCGGAGTGTATGTTCTCCATGGCTATCTGAAATCCGT-AAAAGCATCGGGC 17313 |||||||| |||||||| || || || || || || || || || | ||||||| || || Sbjct 444106 CTGTACATCTCGGAGTGGATATTTTCGATAGCGATTTGGAAACCATAAAAAGCA-CGCGC 444164 Query 17314 TTCCGCTATTTGAACTTCCACGTAGAATCGTTCCGCTAGATTTTCGTTCACGATGCCGTC 17373 || | || || || || ||| || | || || || || || ||||| || Sbjct 444165 CTCGGAGATCTGGACCTCTTTCATGAACCGAACAGCAAGGTTCTCAAGGACTATGCCATC 444224 Query 17374 GCTCGCGGCGAAAAACGCCAATATATGCTTAATGAA 17409 | ||||||||||| || | | || ||||||| Sbjct 444225 GGAGGCGGCGAAAAAGGCGAGAACGTGACTAATGAA 444260 Score = 107 bits (118), Expect = 2e-18 Identities = 302/456 (66%), Gaps = 7/456 (2%) Strand=Plus/Plus Query 16956 ACATCAGACATGCGAAATCGCAATGTAATCCCTCGTCTCTGCTGATAAGTTCGTTAGAAA 17015 ||| || || |||||||| || || | || || |||| ||| | ||||| || | Sbjct 446945 ACAGCAAGCAAGCGAAATCACAGTGGAGACCTTCATCTCGTGAGATTAACTCGTTTGAGA 447004 Query 17016 ATGTCAACCCGGGCATCTTTCCTCGTTTCTTTAACCAAAATATCGCGGCGAACGACCCAG 17075 | || || |||||||| || | || |||||||||||||| || ||| || | Sbjct 447005 AAGTTAATCCGGGCATTAACCCCCTCTTTTTTAACCAAAATATGGCACAGAAACTTCCGG 447064 Query 17076 AAAAGAATATACCCTCGACGGATGCAAACGCGATTAATCGTTCGGCGTACGTCGCGTCTT 17135 | || || || ||||| ||| | ||||| |||||||| ||||||||| | || | | Sbjct 447065 AGAAAAAGATCCCCTCTACGCAAGCAAAAGCGATTAACCGTTCGGCGAAAGTTTCTCCGC 447124 Query 17136 TGTTACGAATCCATTTCTGCACCCACTCGGCTTTTTGCTTTATGCAATCCATCGTTTCTA 17195 || || ||||||||| ||||||||||||||| | || || ||| || | Sbjct 447125 CGT--CG-ATCCATTTCATAGCCCACTCGGCTTTTTTAGCCACACACGGCACCGTCTCGA 447181 Query 17196 TGGC-CTTAAATAATTTCTCTTTTTCCTGTAGGTCGATTATATACGTATCGATGAGTAGG 17254 |||| | ||| | || ||||| | || |||| || || |||| || || Sbjct 447182 TGGCGCGGAAAAGACGGTTC-TTTTCATCGGAATCTTTTATGTAAGTCTCGAGAAGGAGA 447240 Query 17255 CTGTACATTTCGGAGTGTATGTTCTCCATGGCTATCTGAAATCCGT-AAAAGCATCGGGC 17313 |||||||| |||||||| || || || || || || || || || | ||||||| || || Sbjct 447241 CTGTACATCTCGGAGTGGATATTTTCGATAGCGATTTGGAAACCATAAAAAGCA-CGCGC 447299 Query 17314 TTCCGCTATTTGAACTTCCACGTAGAATCGTTCCGCTAGATTTTCGTTCACGATGCCGTC 17373 || | || || || || ||| || | || || || || || ||||| || Sbjct 447300 CTCGGAGATCTGGACCTCTTTCATGAACCGAACAGCAAGGTTCTCAAGGACTATGCCATC 447359 Query 17374 GCTCGCGGCGAAAAACGCCAATATATGCTTAATGAA 17409 | ||||||||||| || | | || ||||||| Sbjct 447360 GGAGGCGGCGAAAAAGGCGAGAACGTGACTAATGAA 447395 >seq28581 Length=397638 Score = 84.2 bits (92), Expect = 2e-11 Identities = 151/218 (69%), Gaps = 7/218 (3%) Strand=Plus/Plus Query 16956 ACATCAGACATGCGAAATCGCAATGTAATCCCTCGTCTCTGCTGATAAGTTCGTTAGAAA 17015 ||| || || || || |||||||| | || || |||| ||| | ||||| || | Sbjct 34075 ACAGCAAGCAAGCAAAGTCGCAATGGAGACCTTCATCTCGAGAGATCAACTCGTTTGAGA 34134 Query 17016 ATGTCAACCCGGGCATCTTTCCTCGTTTCTTTAACCAAAATATCGCGGCGAACGACCCAG 17075 | || || || ||||| || || || |||||||||||||||||| ||| || | Sbjct 34135 AAGTTAATCCAGGCATTAACCCGCGCTTTTTTAACCAAAATATCGCGCAGAAACTGCCGG 34194 Query 17076 AAAAGAATATACCCTCGACGGATGCAAACGCGATTAATCGTTCGGCGTA--CGTCGCGTC 17133 | || ||||| || || ||| | || || |||||||| |||||||| | | ||||| | Sbjct 34195 AGAAAAATATGCCTTCTACGCAAGCGAAAGCGATTAACCGTTCGGCAAAAGCTTCGCGGC 34254 Query 17134 TTTGTTACGAATCCATTTCTGCACCCACTCGGCTTTTT 17171 | || |||||||| |||| |||||||||| Sbjct 34255 CGT----CG-ATCCATTTGAAAGCCCAATCGGCTTTTT 34287 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 517353131260680