Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Gossypium_20barbadense_20[genbank_20GCA_5F001856525.1_202016-11-03] 29,751 sequences; 2,566,742,836 total letters Query= NC_001266.1 Length=159857 Score E Sequences producing significant alignments: (Bits) Value seq29212 136 4e-27 seq22586 116 4e-21 seq28581 98.7 1e-15 >seq29212 Length=358297 Score = 136 bits (150), Expect = 4e-27 Identities = 388/584 (66%), Gaps = 22/584 (4%) Strand=Plus/Minus Query 16202 CACGCGAAGTCGCAATGTAGTCCTTCGTCTCTGCTGATAAGTTCGTTGGAAAAAGTTAAC 16261 || || ||||||||||| || ||||| |||| ||| | ||||| || |||||||| Sbjct 223223 CAAGCAAAGTCGCAATGGAGACCTTCATCTCGAGAGATCAACTCGTTTGAGAAAGTTAAT 223164 Query 16262 CCTGGCATTTTTCCTCGTTTCTTTAACCAGAATATCGCA--GCAAATGACCCCGAAAAGA 16319 || |||||| || || || |||||||| ||||||||| | || || || || || | Sbjct 223163 CCAGGCATTAACCCGCGCTTTTTTAACCAAAATATCGCACAGAAACTG--CCGGAGAAAA 223106 Query 16320 ATATACCCTCAACAGATGCAAAAGCGATTAATCGTTCCGCGTA--CGTAGCATCTTTATT 16377 |||| || || || | || ||||||||||| ||||| || | | | || | | Sbjct 223105 ATATGCCTTCTACGCAAGCGAAAGCGATTAACCGTTCGGCAAAAGCTTCGCCGCCGT--- 223049 Query 16378 ACGAATCCATTTCTGTACCCATTCGGCTTTTTGTTTTATACAATCCATCGTTTCTATGGC 16437 || ||||||||| |||| |||||||||| | || || |||||| | || Sbjct 223048 -CG-ATCCATTTCAAAGCCCAATCGGCTTTTTTAGCCACGCACGGCACCGTTTCAGTAGC 222991 Query 16438 CTTAAACAATTTCTCTTTTTC-CTGAATATCGATTATATACGTATCAATCAGTAAACTGT 16496 | || | | |||||| || | ||| | ||||| || || | || | ||| | Sbjct 222990 GTGGAAGAGGCGGTTTTTTTCGGTGGA-ATCTTTAATATAAGTTTCGAGGAGGAGACTAT 222932 Query 16497 ACATTTCTGAGTGTATGTTCTCTATGGCTATCTGAAATCCATAGAA-GCATCGAGCCTCC 16555 |||| || ||||| || ||||| ||||| || || |||||||| || ||| || |||||| Sbjct 222931 ACATCTCAGAGTGGATATTCTCGATGGCGATTTGGAATCCATAAAATGCA-CGCGCCTCC 222873 Query 16556 GCTATTTGTA---CTTCCACGTAAAATCGTTCCGCCAGGTTCTCATTCACGATACCGTCA 16612 || ||||| | ||| || | || || | || || || || ||||| || || Sbjct 222872 GCGATTTGGACCTCTTTCATG---AAGCGAACAGCGAGATTTTCTAGAACGATGCCATCG 222816 Query 16613 CTTGCAGCAAAAAACGCCAATATGTGCTTAATGAAATATTTTTCGTCAGATGTAAGAATA 16672 ||| || || || || | | || | ||||| | |||||| | ||||| | Sbjct 222815 GATGCGGCGAAGAAGGCAAGGACATGACTGATGAAGTGGCGTTCGTCGGCGTTAAGATTT 222756 Query 16673 TGCCAATCTTTTAAATCTTTGGATATATCCACTTCTTCTGGCGTCCAAAAGCTAGCCACT 16732 ||||| | | | ||| || | ||| ||||| || | |||||||| || | Sbjct 222755 TGCCAGTGTGGAAGATCGGAAGAGAGATCAACTTCCTCGGCAGTCCAAAAAGAGGCTTCG 222696 Query 16733 GCCTTTTTATACATTTTCCAAATATCATTGTATTGTA-TGGGAA 16775 || || |||||||||| ||| || | |||||| | |||||| Sbjct 222695 GCTTTCTTATACATTTCCCATATCTGTGGGTATTGGATTGGGAA 222652 >seq22586 Length=877411 Score = 116 bits (128), Expect = 4e-21 Identities = 379/580 (65%), Gaps = 13/580 (2%) Strand=Plus/Plus Query 16202 CACGCGAAGTCGCAATGTAGTCCTTCGTCTCTGCTGATAAGTTCGTTGGAAAAAGTTAAC 16261 || ||||| || || || || ||||| |||| ||| | ||||| || |||||||| Sbjct 443818 CAAGCGAAATCACAGTGGAGACCTTCATCTCGTGAGATTAACTCGTTTGAGAAAGTTAAT 443877 Query 16262 CCTGGCATTTTTCCTCGTTTCTTTAACCAGAATATCGCAGCAAATGACCCCGAAAAGAAT 16321 || |||||| || | || |||||||| ||||| ||| || || || || || Sbjct 443878 CCGGGCATTAACCCCCTCTTTTTTAACCAAAATATGGCACAGAAACTTCCGGAGAAAAAG 443937 Query 16322 ATACCCTCAACAGATGCAAAAGCGATTAATCGTTCCGCGTACGTAGCATCTTTATTACGA 16381 || ||||| || | |||||||||||||| ||||| ||| | || | | | || Sbjct 443938 ATCCCCTCTACGCAAGCAAAAGCGATTAACCGTTCGGCGAAAGTTTCTCCGCCGT--CG- 443994 Query 16382 ATCCATTTCTGTACCCATTCGGCTTTTTGTTTTATACAATCCATCGTTTCTATGGC-CTT 16440 ||||||||| |||| |||||||||| | ||| || ||| || ||||| | Sbjct 443995 ATCCATTTCATAGCCCACTCGGCTTTTTTAGCCACACACGGCACCGTCTCGATGGCGCGG 444054 Query 16441 AAACAATTTCTCTTTTTCCTGAATATCGATTATATACGTATCAATCAGTAAACTGTACAT 16500 ||| | || ||||| | ||| |||| || || || | || | ||||||||| Sbjct 444055 AAAAGACGGTTC-TTTTCATCGGAATCTTTTATGTAAGTCTCGAGAAGGAGACTGTACAT 444113 Query 16501 TTCTGAGTGTATGTTCTCTATGGCTATCTGAAATCCAT-AGAAGCATCGAGCCTCCGCTA 16559 || ||||| || || || || || || || || |||| | ||||| || ||||| | | Sbjct 444114 CTCGGAGTGGATATTTTCGATAGCGATTTGGAAACCATAAAAAGCA-CGCGCCTCGGAGA 444172 Query 16560 TTTGTA---CTTCCACGTAAAATCGTTCCGCCAGGTTCTCATTCACGATACCGTCACTTG 16616 | || | ||| || | || || | || ||||||||| || || || || | Sbjct 444173 TCTGGACCTCTTTCATG---AACCGAACAGCAAGGTTCTCAAGGACTATGCCATCGGAGG 444229 Query 16617 CAGCAAAAAACGCCAATATGTGCTTAATGAAATATTTTTCGTCAGATGTAAGAATATGCC 16676 | || ||||| || | | ||| ||||||| | | || || | || ||| | | || Sbjct 444230 CGGCGAAAAAGGCGAGAACGTGACTAATGAAGTGATGCTCATCGGCGGTGAGAGTTTCCC 444289 Query 16677 AATCTTTTAAATCTTTGGATATATCCACTTCTTCTGGCGTCCAAAAGCTAGCCACTGCCT 16736 | | | ||| || | ||| ||||| |||| |||||||| || | || | Sbjct 444290 AGTGACGAAGATCGGAAGACAGATCGACTTCCTCTGCGGTCCAAAACGACGCTTCGGCTT 444349 Query 16737 TTTTATACATTTTCCAAATATCATTGTATTGTATGGGAAA 16776 | || ||||||| ||| | || |||||| || ||||| Sbjct 444350 TCTTGTACATTTCCCATACTTCTGGGTATTGGATCGGAAA 444389 Score = 116 bits (128), Expect = 4e-21 Identities = 379/580 (65%), Gaps = 13/580 (2%) Strand=Plus/Plus Query 16202 CACGCGAAGTCGCAATGTAGTCCTTCGTCTCTGCTGATAAGTTCGTTGGAAAAAGTTAAC 16261 || ||||| || || || || ||||| |||| ||| | ||||| || |||||||| Sbjct 446953 CAAGCGAAATCACAGTGGAGACCTTCATCTCGTGAGATTAACTCGTTTGAGAAAGTTAAT 447012 Query 16262 CCTGGCATTTTTCCTCGTTTCTTTAACCAGAATATCGCAGCAAATGACCCCGAAAAGAAT 16321 || |||||| || | || |||||||| ||||| ||| || || || || || Sbjct 447013 CCGGGCATTAACCCCCTCTTTTTTAACCAAAATATGGCACAGAAACTTCCGGAGAAAAAG 447072 Query 16322 ATACCCTCAACAGATGCAAAAGCGATTAATCGTTCCGCGTACGTAGCATCTTTATTACGA 16381 || ||||| || | |||||||||||||| ||||| ||| | || | | | || Sbjct 447073 ATCCCCTCTACGCAAGCAAAAGCGATTAACCGTTCGGCGAAAGTTTCTCCGCCGT--CG- 447129 Query 16382 ATCCATTTCTGTACCCATTCGGCTTTTTGTTTTATACAATCCATCGTTTCTATGGC-CTT 16440 ||||||||| |||| |||||||||| | ||| || ||| || ||||| | Sbjct 447130 ATCCATTTCATAGCCCACTCGGCTTTTTTAGCCACACACGGCACCGTCTCGATGGCGCGG 447189 Query 16441 AAACAATTTCTCTTTTTCCTGAATATCGATTATATACGTATCAATCAGTAAACTGTACAT 16500 ||| | || ||||| | ||| |||| || || || | || | ||||||||| Sbjct 447190 AAAAGACGGTTC-TTTTCATCGGAATCTTTTATGTAAGTCTCGAGAAGGAGACTGTACAT 447248 Query 16501 TTCTGAGTGTATGTTCTCTATGGCTATCTGAAATCCAT-AGAAGCATCGAGCCTCCGCTA 16559 || ||||| || || || || || || || || |||| | ||||| || ||||| | | Sbjct 447249 CTCGGAGTGGATATTTTCGATAGCGATTTGGAAACCATAAAAAGCA-CGCGCCTCGGAGA 447307 Query 16560 TTTGTA---CTTCCACGTAAAATCGTTCCGCCAGGTTCTCATTCACGATACCGTCACTTG 16616 | || | ||| || | || || | || ||||||||| || || || || | Sbjct 447308 TCTGGACCTCTTTCATG---AACCGAACAGCAAGGTTCTCAAGGACTATGCCATCGGAGG 447364 Query 16617 CAGCAAAAAACGCCAATATGTGCTTAATGAAATATTTTTCGTCAGATGTAAGAATATGCC 16676 | || ||||| || | | ||| ||||||| | | || || | || ||| | | || Sbjct 447365 CGGCGAAAAAGGCGAGAACGTGACTAATGAAGTGATGCTCATCGGCGGTGAGAGTTTCCC 447424 Query 16677 AATCTTTTAAATCTTTGGATATATCCACTTCTTCTGGCGTCCAAAAGCTAGCCACTGCCT 16736 | | | ||| || | ||| ||||| |||| |||||||| || | || | Sbjct 447425 AGTGACGAAGATCGGAAGACAGATCGACTTCCTCTGCGGTCCAAAACGACGCTTCGGCTT 447484 Query 16737 TTTTATACATTTTCCAAATATCATTGTATTGTATGGGAAA 16776 | || ||||||| ||| | || |||||| || ||||| Sbjct 447485 TCTTGTACATTTCCCATACTTCTGGGTATTGGATCGGAAA 447524 >seq28581 Length=397638 Score = 98.7 bits (108), Expect = 1e-15 Identities = 119/160 (74%), Gaps = 4/160 (3%) Strand=Plus/Plus Query 16202 CACGCGAAGTCGCAATGTAGTCCTTCGTCTCTGCTGATAAGTTCGTTGGAAAAAGTTAAC 16261 || || ||||||||||| || ||||| |||| ||| | ||||| || |||||||| Sbjct 34083 CAAGCAAAGTCGCAATGGAGACCTTCATCTCGAGAGATCAACTCGTTTGAGAAAGTTAAT 34142 Query 16262 CCTGGCATTTTTCCTCGTTTCTTTAACCAGAATAT--CGCAGCAAATGACCCCGAAAAGA 16319 || |||||| || || || |||||||| ||||| ||||| || || || || || | Sbjct 34143 CCAGGCATTAACCCGCGCTTTTTTAACCAAAATATCGCGCAGAAACTG--CCGGAGAAAA 34200 Query 16320 ATATACCCTCAACAGATGCAAAAGCGATTAATCGTTCCGC 16359 |||| || || || | || ||||||||||| ||||| || Sbjct 34201 ATATGCCTTCTACGCAAGCGAAAGCGATTAACCGTTCGGC 34240 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 511224211377320