Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Gossypium_20barbadense_20[genbank_20GCA_5F001856525.1_202016-11-03]
29,751 sequences; 2,566,742,836 total letters
Query= NC_001266.1
Length=159857
Score E
Sequences producing significant alignments: (Bits) Value
seq29212 136 4e-27
seq22586 116 4e-21
seq28581 98.7 1e-15
>seq29212
Length=358297
Score = 136 bits (150), Expect = 4e-27
Identities = 388/584 (66%), Gaps = 22/584 (4%)
Strand=Plus/Minus
Query 16202 CACGCGAAGTCGCAATGTAGTCCTTCGTCTCTGCTGATAAGTTCGTTGGAAAAAGTTAAC 16261
|| || ||||||||||| || ||||| |||| ||| | ||||| || ||||||||
Sbjct 223223 CAAGCAAAGTCGCAATGGAGACCTTCATCTCGAGAGATCAACTCGTTTGAGAAAGTTAAT 223164
Query 16262 CCTGGCATTTTTCCTCGTTTCTTTAACCAGAATATCGCA--GCAAATGACCCCGAAAAGA 16319
|| |||||| || || || |||||||| ||||||||| | || || || || || |
Sbjct 223163 CCAGGCATTAACCCGCGCTTTTTTAACCAAAATATCGCACAGAAACTG--CCGGAGAAAA 223106
Query 16320 ATATACCCTCAACAGATGCAAAAGCGATTAATCGTTCCGCGTA--CGTAGCATCTTTATT 16377
|||| || || || | || ||||||||||| ||||| || | | | || | |
Sbjct 223105 ATATGCCTTCTACGCAAGCGAAAGCGATTAACCGTTCGGCAAAAGCTTCGCCGCCGT--- 223049
Query 16378 ACGAATCCATTTCTGTACCCATTCGGCTTTTTGTTTTATACAATCCATCGTTTCTATGGC 16437
|| ||||||||| |||| |||||||||| | || || |||||| | ||
Sbjct 223048 -CG-ATCCATTTCAAAGCCCAATCGGCTTTTTTAGCCACGCACGGCACCGTTTCAGTAGC 222991
Query 16438 CTTAAACAATTTCTCTTTTTC-CTGAATATCGATTATATACGTATCAATCAGTAAACTGT 16496
| || | | |||||| || | ||| | ||||| || || | || | ||| |
Sbjct 222990 GTGGAAGAGGCGGTTTTTTTCGGTGGA-ATCTTTAATATAAGTTTCGAGGAGGAGACTAT 222932
Query 16497 ACATTTCTGAGTGTATGTTCTCTATGGCTATCTGAAATCCATAGAA-GCATCGAGCCTCC 16555
|||| || ||||| || ||||| ||||| || || |||||||| || ||| || ||||||
Sbjct 222931 ACATCTCAGAGTGGATATTCTCGATGGCGATTTGGAATCCATAAAATGCA-CGCGCCTCC 222873
Query 16556 GCTATTTGTA---CTTCCACGTAAAATCGTTCCGCCAGGTTCTCATTCACGATACCGTCA 16612
|| ||||| | ||| || | || || | || || || || ||||| || ||
Sbjct 222872 GCGATTTGGACCTCTTTCATG---AAGCGAACAGCGAGATTTTCTAGAACGATGCCATCG 222816
Query 16613 CTTGCAGCAAAAAACGCCAATATGTGCTTAATGAAATATTTTTCGTCAGATGTAAGAATA 16672
||| || || || || | | || | ||||| | |||||| | ||||| |
Sbjct 222815 GATGCGGCGAAGAAGGCAAGGACATGACTGATGAAGTGGCGTTCGTCGGCGTTAAGATTT 222756
Query 16673 TGCCAATCTTTTAAATCTTTGGATATATCCACTTCTTCTGGCGTCCAAAAGCTAGCCACT 16732
||||| | | | ||| || | ||| ||||| || | |||||||| || |
Sbjct 222755 TGCCAGTGTGGAAGATCGGAAGAGAGATCAACTTCCTCGGCAGTCCAAAAAGAGGCTTCG 222696
Query 16733 GCCTTTTTATACATTTTCCAAATATCATTGTATTGTA-TGGGAA 16775
|| || |||||||||| ||| || | |||||| | ||||||
Sbjct 222695 GCTTTCTTATACATTTCCCATATCTGTGGGTATTGGATTGGGAA 222652
>seq22586
Length=877411
Score = 116 bits (128), Expect = 4e-21
Identities = 379/580 (65%), Gaps = 13/580 (2%)
Strand=Plus/Plus
Query 16202 CACGCGAAGTCGCAATGTAGTCCTTCGTCTCTGCTGATAAGTTCGTTGGAAAAAGTTAAC 16261
|| ||||| || || || || ||||| |||| ||| | ||||| || ||||||||
Sbjct 443818 CAAGCGAAATCACAGTGGAGACCTTCATCTCGTGAGATTAACTCGTTTGAGAAAGTTAAT 443877
Query 16262 CCTGGCATTTTTCCTCGTTTCTTTAACCAGAATATCGCAGCAAATGACCCCGAAAAGAAT 16321
|| |||||| || | || |||||||| ||||| ||| || || || || ||
Sbjct 443878 CCGGGCATTAACCCCCTCTTTTTTAACCAAAATATGGCACAGAAACTTCCGGAGAAAAAG 443937
Query 16322 ATACCCTCAACAGATGCAAAAGCGATTAATCGTTCCGCGTACGTAGCATCTTTATTACGA 16381
|| ||||| || | |||||||||||||| ||||| ||| | || | | | ||
Sbjct 443938 ATCCCCTCTACGCAAGCAAAAGCGATTAACCGTTCGGCGAAAGTTTCTCCGCCGT--CG- 443994
Query 16382 ATCCATTTCTGTACCCATTCGGCTTTTTGTTTTATACAATCCATCGTTTCTATGGC-CTT 16440
||||||||| |||| |||||||||| | ||| || ||| || ||||| |
Sbjct 443995 ATCCATTTCATAGCCCACTCGGCTTTTTTAGCCACACACGGCACCGTCTCGATGGCGCGG 444054
Query 16441 AAACAATTTCTCTTTTTCCTGAATATCGATTATATACGTATCAATCAGTAAACTGTACAT 16500
||| | || ||||| | ||| |||| || || || | || | |||||||||
Sbjct 444055 AAAAGACGGTTC-TTTTCATCGGAATCTTTTATGTAAGTCTCGAGAAGGAGACTGTACAT 444113
Query 16501 TTCTGAGTGTATGTTCTCTATGGCTATCTGAAATCCAT-AGAAGCATCGAGCCTCCGCTA 16559
|| ||||| || || || || || || || || |||| | ||||| || ||||| | |
Sbjct 444114 CTCGGAGTGGATATTTTCGATAGCGATTTGGAAACCATAAAAAGCA-CGCGCCTCGGAGA 444172
Query 16560 TTTGTA---CTTCCACGTAAAATCGTTCCGCCAGGTTCTCATTCACGATACCGTCACTTG 16616
| || | ||| || | || || | || ||||||||| || || || || |
Sbjct 444173 TCTGGACCTCTTTCATG---AACCGAACAGCAAGGTTCTCAAGGACTATGCCATCGGAGG 444229
Query 16617 CAGCAAAAAACGCCAATATGTGCTTAATGAAATATTTTTCGTCAGATGTAAGAATATGCC 16676
| || ||||| || | | ||| ||||||| | | || || | || ||| | | ||
Sbjct 444230 CGGCGAAAAAGGCGAGAACGTGACTAATGAAGTGATGCTCATCGGCGGTGAGAGTTTCCC 444289
Query 16677 AATCTTTTAAATCTTTGGATATATCCACTTCTTCTGGCGTCCAAAAGCTAGCCACTGCCT 16736
| | | ||| || | ||| ||||| |||| |||||||| || | || |
Sbjct 444290 AGTGACGAAGATCGGAAGACAGATCGACTTCCTCTGCGGTCCAAAACGACGCTTCGGCTT 444349
Query 16737 TTTTATACATTTTCCAAATATCATTGTATTGTATGGGAAA 16776
| || ||||||| ||| | || |||||| || |||||
Sbjct 444350 TCTTGTACATTTCCCATACTTCTGGGTATTGGATCGGAAA 444389
Score = 116 bits (128), Expect = 4e-21
Identities = 379/580 (65%), Gaps = 13/580 (2%)
Strand=Plus/Plus
Query 16202 CACGCGAAGTCGCAATGTAGTCCTTCGTCTCTGCTGATAAGTTCGTTGGAAAAAGTTAAC 16261
|| ||||| || || || || ||||| |||| ||| | ||||| || ||||||||
Sbjct 446953 CAAGCGAAATCACAGTGGAGACCTTCATCTCGTGAGATTAACTCGTTTGAGAAAGTTAAT 447012
Query 16262 CCTGGCATTTTTCCTCGTTTCTTTAACCAGAATATCGCAGCAAATGACCCCGAAAAGAAT 16321
|| |||||| || | || |||||||| ||||| ||| || || || || ||
Sbjct 447013 CCGGGCATTAACCCCCTCTTTTTTAACCAAAATATGGCACAGAAACTTCCGGAGAAAAAG 447072
Query 16322 ATACCCTCAACAGATGCAAAAGCGATTAATCGTTCCGCGTACGTAGCATCTTTATTACGA 16381
|| ||||| || | |||||||||||||| ||||| ||| | || | | | ||
Sbjct 447073 ATCCCCTCTACGCAAGCAAAAGCGATTAACCGTTCGGCGAAAGTTTCTCCGCCGT--CG- 447129
Query 16382 ATCCATTTCTGTACCCATTCGGCTTTTTGTTTTATACAATCCATCGTTTCTATGGC-CTT 16440
||||||||| |||| |||||||||| | ||| || ||| || ||||| |
Sbjct 447130 ATCCATTTCATAGCCCACTCGGCTTTTTTAGCCACACACGGCACCGTCTCGATGGCGCGG 447189
Query 16441 AAACAATTTCTCTTTTTCCTGAATATCGATTATATACGTATCAATCAGTAAACTGTACAT 16500
||| | || ||||| | ||| |||| || || || | || | |||||||||
Sbjct 447190 AAAAGACGGTTC-TTTTCATCGGAATCTTTTATGTAAGTCTCGAGAAGGAGACTGTACAT 447248
Query 16501 TTCTGAGTGTATGTTCTCTATGGCTATCTGAAATCCAT-AGAAGCATCGAGCCTCCGCTA 16559
|| ||||| || || || || || || || || |||| | ||||| || ||||| | |
Sbjct 447249 CTCGGAGTGGATATTTTCGATAGCGATTTGGAAACCATAAAAAGCA-CGCGCCTCGGAGA 447307
Query 16560 TTTGTA---CTTCCACGTAAAATCGTTCCGCCAGGTTCTCATTCACGATACCGTCACTTG 16616
| || | ||| || | || || | || ||||||||| || || || || |
Sbjct 447308 TCTGGACCTCTTTCATG---AACCGAACAGCAAGGTTCTCAAGGACTATGCCATCGGAGG 447364
Query 16617 CAGCAAAAAACGCCAATATGTGCTTAATGAAATATTTTTCGTCAGATGTAAGAATATGCC 16676
| || ||||| || | | ||| ||||||| | | || || | || ||| | | ||
Sbjct 447365 CGGCGAAAAAGGCGAGAACGTGACTAATGAAGTGATGCTCATCGGCGGTGAGAGTTTCCC 447424
Query 16677 AATCTTTTAAATCTTTGGATATATCCACTTCTTCTGGCGTCCAAAAGCTAGCCACTGCCT 16736
| | | ||| || | ||| ||||| |||| |||||||| || | || |
Sbjct 447425 AGTGACGAAGATCGGAAGACAGATCGACTTCCTCTGCGGTCCAAAACGACGCTTCGGCTT 447484
Query 16737 TTTTATACATTTTCCAAATATCATTGTATTGTATGGGAAA 16776
| || ||||||| ||| | || |||||| || |||||
Sbjct 447485 TCTTGTACATTTCCCATACTTCTGGGTATTGGATCGGAAA 447524
>seq28581
Length=397638
Score = 98.7 bits (108), Expect = 1e-15
Identities = 119/160 (74%), Gaps = 4/160 (3%)
Strand=Plus/Plus
Query 16202 CACGCGAAGTCGCAATGTAGTCCTTCGTCTCTGCTGATAAGTTCGTTGGAAAAAGTTAAC 16261
|| || ||||||||||| || ||||| |||| ||| | ||||| || ||||||||
Sbjct 34083 CAAGCAAAGTCGCAATGGAGACCTTCATCTCGAGAGATCAACTCGTTTGAGAAAGTTAAT 34142
Query 16262 CCTGGCATTTTTCCTCGTTTCTTTAACCAGAATAT--CGCAGCAAATGACCCCGAAAAGA 16319
|| |||||| || || || |||||||| ||||| ||||| || || || || || |
Sbjct 34143 CCAGGCATTAACCCGCGCTTTTTTAACCAAAATATCGCGCAGAAACTG--CCGGAGAAAA 34200
Query 16320 ATATACCCTCAACAGATGCAAAAGCGATTAATCGTTCCGC 16359
|||| || || || | || ||||||||||| ||||| ||
Sbjct 34201 ATATGCCTTCTACGCAAGCGAAAGCGATTAACCGTTCGGC 34240
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 511224211377320
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |