Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Gossypium_20barbadense_20[genbank_20GCA_5F001856525.1_202016-11-03] 29,751 sequences; 2,566,742,836 total letters Query= NC_001350.1 Length=112930 Score E Sequences producing significant alignments: (Bits) Value seq8423 91.5 1e-13 seq26127 86.0 5e-12 seq19889 86.0 5e-12 seq23995 82.4 6e-11 >seq8423 Length=362193 Score = 91.5 bits (100), Expect = 1e-13 Identities = 77/95 (81%), Gaps = 0/95 (0%) Strand=Plus/Minus Query 101756 ACATGAGCAATCATGCAAGTTAAAAGAGAATAGCTAGCAATGTTAAATGGCACTCCTAAC 101815 ||||||||||||||||| || | ||||| ||| ||||||||||||||||| || || Sbjct 61091 ACATGAGCAATCATGCATGTCAGAAGAGCATAAGATGCAATGTTAAATGGCACACCCAAG 61032 Query 101816 CCCATATCAGCTGATCTTTGATACAGTTGACAGGA 101850 ||||||||||| || | ||||||| ||| || || Sbjct 61031 CCCATATCAGCAGAACGCTGATACATTTGGCAAGA 60997 >seq26127 Length=392893 Score = 86.0 bits (94), Expect = 5e-12 Identities = 76/95 (80%), Gaps = 0/95 (0%) Strand=Plus/Minus Query 101756 ACATGAGCAATCATGCAAGTTAAAAGAGAATAGCTAGCAATGTTAAATGGCACTCCTAAC 101815 ||||||||||||||||| || | |||| ||| ||||||||||||||||| || || Sbjct 307017 ACATGAGCAATCATGCATGTCAGGAGAGCATAAGATGCAATGTTAAATGGCACACCCAAG 306958 Query 101816 CCCATATCAGCTGATCTTTGATACAGTTGACAGGA 101850 ||||||||||| || | ||||||| ||| || || Sbjct 306957 CCCATATCAGCAGAACGCTGATACATTTGGCAAGA 306923 >seq19889 Length=234335 Score = 86.0 bits (94), Expect = 5e-12 Identities = 76/95 (80%), Gaps = 0/95 (0%) Strand=Plus/Plus Query 101756 ACATGAGCAATCATGCAAGTTAAAAGAGAATAGCTAGCAATGTTAAATGGCACTCCTAAC 101815 ||||||||||||||||| || | |||| ||| ||||||||||||||||| || || Sbjct 220593 ACATGAGCAATCATGCATGTCAGGAGAGCATAAGATGCAATGTTAAATGGCACACCCAAG 220652 Query 101816 CCCATATCAGCTGATCTTTGATACAGTTGACAGGA 101850 ||||||||||| || | ||||||| ||| || || Sbjct 220653 CCCATATCAGCAGAACGCTGATACATTTGGCAAGA 220687 >seq23995 Length=352753 Score = 82.4 bits (90), Expect = 6e-11 Identities = 71/88 (81%), Gaps = 0/88 (0%) Strand=Plus/Minus Query 101756 ACATGAGCAATCATGCAAGTTAAAAGAGAATAGCTAGCAATGTTAAATGGCACTCCTAAC 101815 ||||||||||||||||| || | |||| ||| ||||||||||||||||| || || Sbjct 106481 ACATGAGCAATCATGCATGTCAGGAGAGCATAAGATGCAATGTTAAATGGCACACCCAAG 106422 Query 101816 CCCATATCAGCTGATCTTTGATACAGTT 101843 ||||||||||| || | ||||||| || Sbjct 106421 CCCATATCAGCAGAACGCTGATACATTT 106394 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 361120213814501