Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Gossypium_20barbadense_20[genbank_20GCA_5F001856525.1_202016-11-03]
29,751 sequences; 2,566,742,836 total letters
Query= NC_001623.1
Length=133894
Score E
Sequences producing significant alignments: (Bits) Value
seq9953 104 2e-17
seq8609 93.3 4e-14
seq12924 89.7 4e-13
seq2343 89.7 4e-13
seq25104 86.0 5e-12
>seq9953
Length=604776
Score = 104 bits (114), Expect = 2e-17
Identities = 152/215 (71%), Gaps = 0/215 (0%)
Strand=Plus/Minus
Query 28962 ATGCAAATATTCATCAAAACATTGACGGGCAAAACCATTACCGCCGAAACGGAACCCGCA 29021
||||| || ||| |||| || ||||| || |||||||| || || ||| |
Sbjct 353726 ATGCAGATTTTCGTCAAGACGTTGACTGGGAAAACCATAACTTTGGAGGTGGAGAGTTCC 353667
Query 29022 GAGACGGTGGCCGATCTTAAGCAAAAAATTGCCGATAAAGAAGGTGTGCCCGTAGATCAA 29081
|| ||| | | | || ||||| || ||| || |||||||| | || ||||||
Sbjct 353666 GATACGATCGACAATGTTAAGGCGAAGATTCAGGACAAAGAAGGGATTCCACCAGATCAG 353607
Query 29082 CAAAGACTTATCTTTGCGGGCAAACAACTGGAAGATTCCAAAACTATGGCCGATTACAAT 29141
||||| | || || || || |||||| |||||||| | ||| |||| |||||||||
Sbjct 353606 CAAAGGTTGATTTTCGCTGGGAAACAATTGGAAGATGGAAGGACTTTGGCTGATTACAAT 353547
Query 29142 ATTCAGAAGGAATCTACTCTTCACATGGTGTTACG 29176
|||||||||||||| ||||| ||| | || || ||
Sbjct 353546 ATTCAGAAGGAATCCACTCTCCACCTTGTCTTGCG 353512
Score = 104 bits (114), Expect = 2e-17
Identities = 152/215 (71%), Gaps = 0/215 (0%)
Strand=Plus/Minus
Query 28962 ATGCAAATATTCATCAAAACATTGACGGGCAAAACCATTACCGCCGAAACGGAACCCGCA 29021
||||| || ||| |||| || ||||| || |||||||| || || ||| |
Sbjct 354852 ATGCAGATTTTCGTCAAGACGTTGACTGGGAAAACCATAACTTTGGAGGTGGAGAGTTCC 354793
Query 29022 GAGACGGTGGCCGATCTTAAGCAAAAAATTGCCGATAAAGAAGGTGTGCCCGTAGATCAA 29081
|| ||| | | | || ||||| || ||| || |||||||| | || ||||||
Sbjct 354792 GATACGATCGACAATGTTAAGGCGAAGATTCAGGACAAAGAAGGAATTCCACCAGATCAG 354733
Query 29082 CAAAGACTTATCTTTGCGGGCAAACAACTGGAAGATTCCAAAACTATGGCCGATTACAAT 29141
||||| | || || || || |||||| |||||||| | ||| |||| |||||||||
Sbjct 354732 CAAAGGTTGATTTTCGCTGGGAAACAATTGGAAGATGGAAGGACTTTGGCTGATTACAAT 354673
Query 29142 ATTCAGAAGGAATCTACTCTTCACATGGTGTTACG 29176
|||||||||||||| ||||| ||| | || || ||
Sbjct 354672 ATTCAGAAGGAATCCACTCTCCACCTTGTCTTGCG 354638
>seq8609
Length=114046
Score = 93.3 bits (102), Expect = 4e-14
Identities = 143/204 (70%), Gaps = 0/204 (0%)
Strand=Plus/Plus
Query 28962 ATGCAAATATTCATCAAAACATTGACGGGCAAAACCATTACCGCCGAAACGGAACCCGCA 29021
||||| || ||| |||| || ||||| || || |||||||| ||| ||| | |
Sbjct 21161 ATGCAGATCTTCGTCAAGACTTTGACCGGTAAGACCATTACTTTAGAAGTGGAGAGCTCG 21220
Query 29022 GAGACGGTGGCCGATCTTAAGCAAAAAATTGCCGATAAAGAAGGTGTGCCCGTAGATCAA 29081
|| ||| | | | | || || ||| || |||||||| | || ||||||
Sbjct 21221 GATACGATTGATAACGTGAAAGCGAAGATTCAGGACAAAGAAGGAATTCCACCAGATCAG 21280
Query 29082 CAAAGACTTATCTTTGCGGGCAAACAACTGGAAGATTCCAAAACTATGGCCGATTACAAT 29141
||||| | || ||||| || ||||| ||||||||| | ||| |||| |||||||||
Sbjct 21281 CAAAGGTTGATTTTTGCTGGGAAACAGCTGGAAGATGGAAGGACTTTGGCTGATTACAAT 21340
Query 29142 ATTCAGAAGGAATCTACTCTTCAC 29165
||||| ||||| || |||||||||
Sbjct 21341 ATTCAAAAGGAGTCCACTCTTCAC 21364
Score = 87.8 bits (96), Expect = 2e-12
Identities = 86/111 (77%), Gaps = 0/111 (0%)
Strand=Plus/Plus
Query 29055 GATAAAGAAGGTGTGCCCGTAGATCAACAAAGACTTATCTTTGCGGGCAAACAACTGGAA 29114
|| |||||||| | || |||||| ||||| | || ||||| || ||||| ||||||
Sbjct 32349 GACAAAGAAGGAATTCCACCAGATCAGCAAAGGTTGATTTTTGCTGGGAAACAGCTGGAA 32408
Query 29115 GATTCCAAAACTATGGCCGATTACAATATTCAGAAGGAATCTACTCTTCAC 29165
||| | ||| |||| |||||||||||||| ||||| || |||||||||
Sbjct 32409 GATGGAAGGACTTTGGCTGATTACAATATTCAAAAGGAGTCCACTCTTCAC 32459
>seq12924
Length=310248
Score = 89.7 bits (98), Expect = 4e-13
Identities = 142/204 (70%), Gaps = 0/204 (0%)
Strand=Plus/Plus
Query 28962 ATGCAAATATTCATCAAAACATTGACGGGCAAAACCATTACCGCCGAAACGGAACCCGCA 29021
||||| ||||| | ||||| | |||||||| ||||| ||| ||| |||| |
Sbjct 59582 ATGCAGATATTTGTGAAAACCCTTACGGGCAAGACCATCACCCTCGAGGTGGAAAGTTCT 59641
Query 29022 GAGACGGTGGCCGATCTTAAGCAAAAAATTGCCGATAAAGAAGGTGTGCCCGTAGATCAA 29081
|| ||| | | || | ||| || || || || ||||| | || |||| |||
Sbjct 59642 GATACGATTGATAATGTCAAGGCCAAGATCCAAGACAAGGAAGGGATCCCTCTAGACCAA 59701
Query 29082 CAAAGACTTATCTTTGCGGGCAAACAACTGGAAGATTCCAAAACTATGGCCGATTACAAT 29141
|| || ||||||||||| || |||||||| |||||| | ||| | || ||||||||
Sbjct 59702 CAGAGGCTTATCTTTGCAGGTAAACAACTTGAAGATGGCCGAACCCTCGCTGATTACAAC 59761
Query 29142 ATTCAGAAGGAATCTACTCTTCAC 29165
|| ||||| || ||||| || |||
Sbjct 59762 ATCCAGAAAGAGTCTACCCTCCAC 59785
>seq2343
Length=47720
Score = 89.7 bits (98), Expect = 4e-13
Identities = 142/204 (70%), Gaps = 0/204 (0%)
Strand=Plus/Plus
Query 28962 ATGCAAATATTCATCAAAACATTGACGGGCAAAACCATTACCGCCGAAACGGAACCCGCA 29021
||||| || ||| |||| || ||||| || || || ||||| ||| ||| | |
Sbjct 23584 ATGCAGATCTTCGTCAAGACTTTGACCGGTAAGACGATTACTTTAGAAGTGGAGAGCTCG 23643
Query 29022 GAGACGGTGGCCGATCTTAAGCAAAAAATTGCCGATAAAGAAGGTGTGCCCGTAGATCAA 29081
|| ||| | | | | || || ||| || |||||||| | || ||||||
Sbjct 23644 GATACGATTGATAACGTGAAAGCGAAGATTCAGGACAAAGAAGGAATTCCACCAGATCAG 23703
Query 29082 CAAAGACTTATCTTTGCGGGCAAACAACTGGAAGATTCCAAAACTATGGCCGATTACAAT 29141
||||| | || ||||| || |||||||||||||| | ||| |||| |||||||||
Sbjct 23704 CAAAGGTTGATTTTTGCTGGGAAACAACTGGAAGACGGAAGGACTTTGGCTGATTACAAT 23763
Query 29142 ATTCAGAAGGAATCTACTCTTCAC 29165
||||| ||||| || |||||||||
Sbjct 23764 ATTCAAAAGGAGTCCACTCTTCAC 23787
>seq25104
Length=148940
Score = 86.0 bits (94), Expect = 5e-12
Identities = 155/227 (68%), Gaps = 0/227 (0%)
Strand=Plus/Plus
Query 28962 ATGCAAATATTCATCAAAACATTGACGGGCAAAACCATTACCGCCGAAACGGAACCCGCA 29021
|||||||| || | ||||| | || ||||| ||||| ||| ||| ||| ||
Sbjct 35392 ATGCAAATCTTTGTTAAAACCCTCACTGGCAAGACCATCACCCTCGAGGTGGAGAGTTCA 35451
Query 29022 GAGACGGTGGCCGATCTTAAGCAAAAAATTGCCGATAAAGAAGGTGTGCCCGTAGATCAA 29081
|| || | | || | ||| || || ||||| ||||| | || |||||
Sbjct 35452 GACACCATTGATAATGTGAAGGCTAAGATCCAAGATAAGGAAGGGATCCCACCGGATCAG 35511
Query 29082 CAAAGACTTATCTTTGCGGGCAAACAACTGGAAGATTCCAAAACTATGGCCGATTACAAT 29141
|| || ||||||||||| ||||||||||| || ||| | || | ||||| |||||
Sbjct 35512 CAGAGGCTTATCTTTGCTGGCAAACAACTTGAGGATGGCCGCACGCTAGCCGACTACAAC 35571
Query 29142 ATTCAGAAGGAATCTACTCTTCACATGGTGTTACGATTACGAGGAGG 29188
|||||||| ||||| || |||||| |||| | ||| | || || ||
Sbjct 35572 ATTCAGAAAGAATCCACCCTTCACTTGGTTCTTCGACTTCGTGGCGG 35618
Score = 84.2 bits (92), Expect = 2e-11
Identities = 87/114 (76%), Gaps = 0/114 (0%)
Strand=Plus/Plus
Query 29075 AGATCAACAAAGACTTATCTTTGCGGGCAAACAACTGGAAGATTCCAAAACTATGGCCGA 29134
|||||| || || ||||||||||| ||||||||||| || ||| | || | |||||
Sbjct 35733 AGATCAGCAGAGGCTTATCTTTGCTGGCAAACAACTTGAGGATGGCCGCACGCTAGCCGA 35792
Query 29135 TTACAATATTCAGAAGGAATCTACTCTTCACATGGTGTTACGATTACGAGGAGG 29188
||||| |||||||| ||||| || |||||| |||| | ||| | || || ||
Sbjct 35793 CTACAACATTCAGAAAGAATCCACCCTTCACTTGGTTCTTCGACTTCGTGGCGG 35846
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 428180689515905
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |