Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Gossypium_20barbadense_20[genbank_20GCA_5F001856525.1_202016-11-03] 29,751 sequences; 2,566,742,836 total letters Query= NC_001962.1 Length=128413 Score E Sequences producing significant alignments: (Bits) Value seq5610 102 7e-17 seq2874 102 7e-17 seq9953 100 2e-16 seq8609 93.3 3e-14 seq2343 89.7 4e-13 seq12924 84.2 2e-11 >seq5610 Length=141783 Score = 102 bits (112), Expect = 7e-17 Identities = 145/204 (71%), Gaps = 0/204 (0%) Strand=Plus/Plus Query 25035 ATGCAAATATTCATCAAAACATTGACGGGCAAAACCATTACCGCCGAAACGGAACCCGCA 25094 ||||| || || |||| || ||||| |||||||| || ||| || ||| | | Sbjct 62433 ATGCAGATTTTTGTCAAGACTTTGACCGGCAAAACAATCACCTTGGAGGTTGAAAGCTCC 62492 Query 25095 GAGACGGTGGCCGATCTCAAGCAAAAAATTGCCGATAAAGAAGGTGTGCCCGTAGATCAA 25154 || || | | | || | ||| ||| ||| ||||| ||||| | || ||||| Sbjct 62493 GATACCATTGACAATGTTAAGGCAAAGATTCAGGATAAGGAAGGAATCCCACCTGATCAG 62552 Query 25155 CAAAGACTTATCTTTGCGGGCAAACAATTGGAAGATTCCAAAACTATGGCCGATTACAAT 25214 ||||| || |||||||| |||||||||||||||||| | ||| |||| ||||| || Sbjct 62553 CAAAGGCTCATCTTTGCCGGCAAACAATTGGAAGATGGGAGGACTTTGGCTGATTATAAC 62612 Query 25215 ATTCAAAAGGAATCTACTCTTCAC 25238 ||||| || || ||||| |||||| Sbjct 62613 ATTCAGAAAGAGTCTACCCTTCAC 62636 >seq2874 Length=261101 Score = 102 bits (112), Expect = 7e-17 Identities = 145/204 (71%), Gaps = 0/204 (0%) Strand=Plus/Plus Query 25035 ATGCAAATATTCATCAAAACATTGACGGGCAAAACCATTACCGCCGAAACGGAACCCGCA 25094 ||||| || || |||| || ||||| |||||||| || ||| || ||| | | Sbjct 216078 ATGCAGATTTTTGTCAAGACTTTGACCGGCAAAACAATCACCTTGGAGGTTGAAAGCTCC 216137 Query 25095 GAGACGGTGGCCGATCTCAAGCAAAAAATTGCCGATAAAGAAGGTGTGCCCGTAGATCAA 25154 || || | | | || | ||| ||| ||| ||||| ||||| | || ||||| Sbjct 216138 GATACCATTGACAATGTTAAGGCAAAGATTCAGGATAAGGAAGGAATCCCACCTGATCAG 216197 Query 25155 CAAAGACTTATCTTTGCGGGCAAACAATTGGAAGATTCCAAAACTATGGCCGATTACAAT 25214 ||||| || |||||||| |||||||||||||||||| | ||| |||| ||||| || Sbjct 216198 CAAAGGCTCATCTTTGCCGGCAAACAATTGGAAGATGGGAGGACTTTGGCTGATTATAAC 216257 Query 25215 ATTCAAAAGGAATCTACTCTTCAC 25238 ||||| || || ||||| |||||| Sbjct 216258 ATTCAGAAAGAGTCTACCCTTCAC 216281 >seq9953 Length=604776 Score = 100 bits (110), Expect = 2e-16 Identities = 151/215 (70%), Gaps = 0/215 (0%) Strand=Plus/Minus Query 25035 ATGCAAATATTCATCAAAACATTGACGGGCAAAACCATTACCGCCGAAACGGAACCCGCA 25094 ||||| || ||| |||| || ||||| || |||||||| || || ||| | Sbjct 353726 ATGCAGATTTTCGTCAAGACGTTGACTGGGAAAACCATAACTTTGGAGGTGGAGAGTTCC 353667 Query 25095 GAGACGGTGGCCGATCTCAAGCAAAAAATTGCCGATAAAGAAGGTGTGCCCGTAGATCAA 25154 || ||| | | | || | ||| || ||| || |||||||| | || |||||| Sbjct 353666 GATACGATCGACAATGTTAAGGCGAAGATTCAGGACAAAGAAGGGATTCCACCAGATCAG 353607 Query 25155 CAAAGACTTATCTTTGCGGGCAAACAATTGGAAGATTCCAAAACTATGGCCGATTACAAT 25214 ||||| | || || || || ||||||||||||||| | ||| |||| ||||||||| Sbjct 353606 CAAAGGTTGATTTTCGCTGGGAAACAATTGGAAGATGGAAGGACTTTGGCTGATTACAAT 353547 Query 25215 ATTCAAAAGGAATCTACTCTTCACATGGTGTTACG 25249 ||||| |||||||| ||||| ||| | || || || Sbjct 353546 ATTCAGAAGGAATCCACTCTCCACCTTGTCTTGCG 353512 Score = 100 bits (110), Expect = 2e-16 Identities = 151/215 (70%), Gaps = 0/215 (0%) Strand=Plus/Minus Query 25035 ATGCAAATATTCATCAAAACATTGACGGGCAAAACCATTACCGCCGAAACGGAACCCGCA 25094 ||||| || ||| |||| || ||||| || |||||||| || || ||| | Sbjct 354852 ATGCAGATTTTCGTCAAGACGTTGACTGGGAAAACCATAACTTTGGAGGTGGAGAGTTCC 354793 Query 25095 GAGACGGTGGCCGATCTCAAGCAAAAAATTGCCGATAAAGAAGGTGTGCCCGTAGATCAA 25154 || ||| | | | || | ||| || ||| || |||||||| | || |||||| Sbjct 354792 GATACGATCGACAATGTTAAGGCGAAGATTCAGGACAAAGAAGGAATTCCACCAGATCAG 354733 Query 25155 CAAAGACTTATCTTTGCGGGCAAACAATTGGAAGATTCCAAAACTATGGCCGATTACAAT 25214 ||||| | || || || || ||||||||||||||| | ||| |||| ||||||||| Sbjct 354732 CAAAGGTTGATTTTCGCTGGGAAACAATTGGAAGATGGAAGGACTTTGGCTGATTACAAT 354673 Query 25215 ATTCAAAAGGAATCTACTCTTCACATGGTGTTACG 25249 ||||| |||||||| ||||| ||| | || || || Sbjct 354672 ATTCAGAAGGAATCCACTCTCCACCTTGTCTTGCG 354638 >seq8609 Length=114046 Score = 93.3 bits (102), Expect = 3e-14 Identities = 143/204 (70%), Gaps = 0/204 (0%) Strand=Plus/Plus Query 25035 ATGCAAATATTCATCAAAACATTGACGGGCAAAACCATTACCGCCGAAACGGAACCCGCA 25094 ||||| || ||| |||| || ||||| || || |||||||| ||| ||| | | Sbjct 21161 ATGCAGATCTTCGTCAAGACTTTGACCGGTAAGACCATTACTTTAGAAGTGGAGAGCTCG 21220 Query 25095 GAGACGGTGGCCGATCTCAAGCAAAAAATTGCCGATAAAGAAGGTGTGCCCGTAGATCAA 25154 || ||| | | | | || || ||| || |||||||| | || |||||| Sbjct 21221 GATACGATTGATAACGTGAAAGCGAAGATTCAGGACAAAGAAGGAATTCCACCAGATCAG 21280 Query 25155 CAAAGACTTATCTTTGCGGGCAAACAATTGGAAGATTCCAAAACTATGGCCGATTACAAT 25214 ||||| | || ||||| || ||||| |||||||| | ||| |||| ||||||||| Sbjct 21281 CAAAGGTTGATTTTTGCTGGGAAACAGCTGGAAGATGGAAGGACTTTGGCTGATTACAAT 21340 Query 25215 ATTCAAAAGGAATCTACTCTTCAC 25238 ||||||||||| || ||||||||| Sbjct 21341 ATTCAAAAGGAGTCCACTCTTCAC 21364 Score = 87.8 bits (96), Expect = 1e-12 Identities = 86/111 (77%), Gaps = 0/111 (0%) Strand=Plus/Plus Query 25128 GATAAAGAAGGTGTGCCCGTAGATCAACAAAGACTTATCTTTGCGGGCAAACAATTGGAA 25187 || |||||||| | || |||||| ||||| | || ||||| || ||||| ||||| Sbjct 32349 GACAAAGAAGGAATTCCACCAGATCAGCAAAGGTTGATTTTTGCTGGGAAACAGCTGGAA 32408 Query 25188 GATTCCAAAACTATGGCCGATTACAATATTCAAAAGGAATCTACTCTTCAC 25238 ||| | ||| |||| |||||||||||||||||||| || ||||||||| Sbjct 32409 GATGGAAGGACTTTGGCTGATTACAATATTCAAAAGGAGTCCACTCTTCAC 32459 >seq2343 Length=47720 Score = 89.7 bits (98), Expect = 4e-13 Identities = 142/204 (70%), Gaps = 0/204 (0%) Strand=Plus/Plus Query 25035 ATGCAAATATTCATCAAAACATTGACGGGCAAAACCATTACCGCCGAAACGGAACCCGCA 25094 ||||| || ||| |||| || ||||| || || || ||||| ||| ||| | | Sbjct 23584 ATGCAGATCTTCGTCAAGACTTTGACCGGTAAGACGATTACTTTAGAAGTGGAGAGCTCG 23643 Query 25095 GAGACGGTGGCCGATCTCAAGCAAAAAATTGCCGATAAAGAAGGTGTGCCCGTAGATCAA 25154 || ||| | | | | || || ||| || |||||||| | || |||||| Sbjct 23644 GATACGATTGATAACGTGAAAGCGAAGATTCAGGACAAAGAAGGAATTCCACCAGATCAG 23703 Query 25155 CAAAGACTTATCTTTGCGGGCAAACAATTGGAAGATTCCAAAACTATGGCCGATTACAAT 25214 ||||| | || ||||| || |||||| ||||||| | ||| |||| ||||||||| Sbjct 23704 CAAAGGTTGATTTTTGCTGGGAAACAACTGGAAGACGGAAGGACTTTGGCTGATTACAAT 23763 Query 25215 ATTCAAAAGGAATCTACTCTTCAC 25238 ||||||||||| || ||||||||| Sbjct 23764 ATTCAAAAGGAGTCCACTCTTCAC 23787 >seq12924 Length=310248 Score = 84.2 bits (92), Expect = 2e-11 Identities = 141/204 (69%), Gaps = 0/204 (0%) Strand=Plus/Plus Query 25035 ATGCAAATATTCATCAAAACATTGACGGGCAAAACCATTACCGCCGAAACGGAACCCGCA 25094 ||||| ||||| | ||||| | |||||||| ||||| ||| ||| |||| | Sbjct 59582 ATGCAGATATTTGTGAAAACCCTTACGGGCAAGACCATCACCCTCGAGGTGGAAAGTTCT 59641 Query 25095 GAGACGGTGGCCGATCTCAAGCAAAAAATTGCCGATAAAGAAGGTGTGCCCGTAGATCAA 25154 || ||| | | || ||||| || || || || ||||| | || |||| ||| Sbjct 59642 GATACGATTGATAATGTCAAGGCCAAGATCCAAGACAAGGAAGGGATCCCTCTAGACCAA 59701 Query 25155 CAAAGACTTATCTTTGCGGGCAAACAATTGGAAGATTCCAAAACTATGGCCGATTACAAT 25214 || || ||||||||||| || |||||| | |||||| | ||| | || |||||||| Sbjct 59702 CAGAGGCTTATCTTTGCAGGTAAACAACTTGAAGATGGCCGAACCCTCGCTGATTACAAC 59761 Query 25215 ATTCAAAAGGAATCTACTCTTCAC 25238 || || || || ||||| || ||| Sbjct 59762 ATCCAGAAAGAGTCTACCCTCCAC 59785 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 410647849059914