Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Gossypium_20barbadense_20[genbank_20GCA_5F001856525.1_202016-11-03] 29,751 sequences; 2,566,742,836 total letters Query= NC_002642.1 Length=144575 Score E Sequences producing significant alignments: (Bits) Value seq22586 111 1e-19 >seq22586 Length=877411 Score = 111 bits (122), Expect = 1e-19 Identities = 565/889 (64%), Gaps = 45/889 (5%) Strand=Plus/Plus Query 15944 TTTTGATATTCACTAACTCTCTTTTCAAAGAAATTTGTTTTTCCTTCTAATGAAATATTT 16003 |||||||| || | |||||| || || |||||||| ||||| |||| || || || | Sbjct 443527 TTTTGATACTCTCCAACTCTTTTCTCGAAGAAATTGGTTTTCCCTTGCAACGATATCAGT 443586 Query 16004 TCCATAAAATCAAAAGGATTTTTTGAACAA-TAGTATTTAT---CGCATCCCAATTCCAA 16059 ||||| ||||||| || || || || | ||| | | || | || || | Sbjct 443587 TCCATCCAATCAAATGGGTT----GACCACGTTGTACATCTTTCCGTACCCTAACGCTCC 443642 Query 16060 CAATAATCTATCCGCCACAAATTCTATATACTGTTTCATTAAATCACAGTTCATTCCTAT 16119 ||| || | |||||| || || || || ||||| ||||||| || | |||||| || | Sbjct 443643 CAACAACCGATCCGCTACGAACTCGATGTACTGACTCATTAACTCGCCGTTCATCCCAAC 443702 Query 16120 TAATTTAACAGGG-ATTGCTTCTGTTAAAAAAtttttttCTATATTAACCGCTTCAATGA 16178 || ||||| | || || || || | | ||||| | ||||| || | | Sbjct 443703 CAACGCG-CAGGGCAGAGCATCGCATACGAACTCCCTCTCTATGTCCACCGCGTCCCTTA 443761 Query 16179 TTATATCTCTTAC------TACACTA----TTTAACGGAGGGTTTAATAAGTGTTTAAAC 16228 ||| |||| || | |||| || | |||||| || || || Sbjct 443762 CTATCCCTCTCACGCGTTCTTCACTCAGCTTTGACCGGAGGAG------AGAGT----AC 443811 Query 16229 ATTATACAAGCAAAATCACAATGCAATCCTTCGTCCCTACTTATTAACTCGTTTGAAAAT 16288 | | ||||| |||||||| || | ||||| || | |||||||||||||| || Sbjct 443812 AGCAAGCAAGCGAAATCACAGTGGAGACCTTCATCTCGTGAGATTAACTCGTTTGAGAAA 443871 Query 16289 GTAAGACCTGGCATTAGTCCTCGTTTTTTAATCCAAAATATAGCGGCAAATGAA---CCA 16345 || | || ||||||| || | ||||| | ||||||||| |||| | || || Sbjct 443872 GTTAATCCGGGCATTAACCCCCTCTTTTTTAACCAAAATAT---GGCACAGAAACTTCCG 443928 Query 16346 GAAAAGAATATACCTTCAACTGCGGCAAATGCAACCAATCGCTCACCGTACGTTCTAttt 16405 || || || || || || || ||||| || | || || || || | ||| | | Sbjct 443929 GAGAAAAAGATCCCCTCTACGCAAGCAAAAGCGATTAACCGTTCGGCGAAAGTT---TCT 443985 Query 16406 ttactttctatccattttttagcccaatttgctttttgtttAACACAGTTCATGTTCTCT 16465 | || |||||||| ||||||| | ||||||| ||||| || |||| Sbjct 443986 CCGCCGTCGATCCATTTCATAGCCCACTCGGCTTTTTTAGCCACACACGGCACCGTCTCG 444045 Query 16466 ATTGCATTAAATAAATAAtttttttCTTTGCTATCTAAAATATAAGTATCTATTAGTAAA 16525 || || || | | || ||||| | | |||| || ||||| || | || | | Sbjct 444046 ATGGCGCGGAAAAGACGGTTCTTTTCATCGGAATCTTTTATGTAAGTCTCGAGAAGGAGA 444105 Query 16526 CTATACATTTCTGAATGAATATTCTCCATTGCTATCTGAAAACCAT-AAAAGCATCTAGC 16584 || ||||| || || || ||||| || || || || || ||||||| ||||||| | || Sbjct 444106 CTGTACATCTCGGAGTGGATATTTTCGATAGCGATTTGGAAACCATAAAAAGCA-CGCGC 444164 Query 16585 TTCGGATATTTGTACTTCAGAGTAAAACCTTTCTGCTAAGTTTTCGTTAACTATTCCATC 16644 ||||| || || || || |||| | || | ||| || ||||| ||||| Sbjct 444165 CTCGGAGATCTGGACCTCTTTCATGAACCGAACAGCAAGGTTCTCAAGGACTATGCCATC 444224 Query 16645 GCTAGCTGCAAAAAACGCAAGTATGTGTTTAATAAAAtttttttCGTTATC--TGAAAGT 16702 | || || ||||| || || | ||| |||| || | | || | | ||| ||| Sbjct 444225 GGAGGCGGCGAAAAAGGCGAGAACGTGACTAATGAAGTGATGCTCATCGGCGGTGAGAGT 444284 Query 16703 TTTAACCAGTCAGAAAAATCTTTTGATAAATCGACCTCTTCTACAGTCCAAAAAGAAGCA 16762 || ||||| | || ||| || | |||||| || ||| | |||||||| || || Sbjct 444285 TT--CCCAGTGACGAAGATCGGAAGACAGATCGACTTCCTCTGCGGTCCAAAACGACGCT 444342 Query 16763 ACAGCCTTTTTATACATTTTCCATATGTCTTCGTAAACAATAGGAAACA 16811 | || || || ||||||| ||||| ||| ||| || ||||||| Sbjct 444343 TCGGCTTTCTTGTACATTTCCCATACTTCTGGGTATTGGATCGGAAACA 444391 Score = 111 bits (122), Expect = 1e-19 Identities = 565/889 (64%), Gaps = 45/889 (5%) Strand=Plus/Plus Query 15944 TTTTGATATTCACTAACTCTCTTTTCAAAGAAATTTGTTTTTCCTTCTAATGAAATATTT 16003 |||||||| || | |||||| || || |||||||| ||||| |||| || || || | Sbjct 446662 TTTTGATACTCTCCAACTCTTTTCTCGAAGAAATTGGTTTTCCCTTGCAACGATATCAGT 446721 Query 16004 TCCATAAAATCAAAAGGATTTTTTGAACAA-TAGTATTTAT---CGCATCCCAATTCCAA 16059 ||||| ||||||| || || || || | ||| | | || | || || | Sbjct 446722 TCCATCCAATCAAATGGGTT----GACCACGTTGTACATCTTTCCGTACCCTAACGCTCC 446777 Query 16060 CAATAATCTATCCGCCACAAATTCTATATACTGTTTCATTAAATCACAGTTCATTCCTAT 16119 ||| || | |||||| || || || || ||||| ||||||| || | |||||| || | Sbjct 446778 CAACAACCGATCCGCTACGAACTCGATGTACTGACTCATTAACTCGCCGTTCATCCCAAC 446837 Query 16120 TAATTTAACAGGG-ATTGCTTCTGTTAAAAAAtttttttCTATATTAACCGCTTCAATGA 16178 || ||||| | || || || || | | ||||| | ||||| || | | Sbjct 446838 CAACGCG-CAGGGCAGAGCATCGCATACGAACTCCCTCTCTATGTCCACCGCGTCCCTTA 446896 Query 16179 TTATATCTCTTAC------TACACTA----TTTAACGGAGGGTTTAATAAGTGTTTAAAC 16228 ||| |||| || | |||| || | |||||| || || || Sbjct 446897 CTATCCCTCTCACGCGTTCTTCACTCAGCTTTGACCGGAGGAG------AGAGT----AC 446946 Query 16229 ATTATACAAGCAAAATCACAATGCAATCCTTCGTCCCTACTTATTAACTCGTTTGAAAAT 16288 | | ||||| |||||||| || | ||||| || | |||||||||||||| || Sbjct 446947 AGCAAGCAAGCGAAATCACAGTGGAGACCTTCATCTCGTGAGATTAACTCGTTTGAGAAA 447006 Query 16289 GTAAGACCTGGCATTAGTCCTCGTTTTTTAATCCAAAATATAGCGGCAAATGAA---CCA 16345 || | || ||||||| || | ||||| | ||||||||| |||| | || || Sbjct 447007 GTTAATCCGGGCATTAACCCCCTCTTTTTTAACCAAAATAT---GGCACAGAAACTTCCG 447063 Query 16346 GAAAAGAATATACCTTCAACTGCGGCAAATGCAACCAATCGCTCACCGTACGTTCTAttt 16405 || || || || || || || ||||| || | || || || || | ||| | | Sbjct 447064 GAGAAAAAGATCCCCTCTACGCAAGCAAAAGCGATTAACCGTTCGGCGAAAGTT---TCT 447120 Query 16406 ttactttctatccattttttagcccaatttgctttttgtttAACACAGTTCATGTTCTCT 16465 | || |||||||| ||||||| | ||||||| ||||| || |||| Sbjct 447121 CCGCCGTCGATCCATTTCATAGCCCACTCGGCTTTTTTAGCCACACACGGCACCGTCTCG 447180 Query 16466 ATTGCATTAAATAAATAAtttttttCTTTGCTATCTAAAATATAAGTATCTATTAGTAAA 16525 || || || | | || ||||| | | |||| || ||||| || | || | | Sbjct 447181 ATGGCGCGGAAAAGACGGTTCTTTTCATCGGAATCTTTTATGTAAGTCTCGAGAAGGAGA 447240 Query 16526 CTATACATTTCTGAATGAATATTCTCCATTGCTATCTGAAAACCAT-AAAAGCATCTAGC 16584 || ||||| || || || ||||| || || || || || ||||||| ||||||| | || Sbjct 447241 CTGTACATCTCGGAGTGGATATTTTCGATAGCGATTTGGAAACCATAAAAAGCA-CGCGC 447299 Query 16585 TTCGGATATTTGTACTTCAGAGTAAAACCTTTCTGCTAAGTTTTCGTTAACTATTCCATC 16644 ||||| || || || || |||| | || | ||| || ||||| ||||| Sbjct 447300 CTCGGAGATCTGGACCTCTTTCATGAACCGAACAGCAAGGTTCTCAAGGACTATGCCATC 447359 Query 16645 GCTAGCTGCAAAAAACGCAAGTATGTGTTTAATAAAAtttttttCGTTATC--TGAAAGT 16702 | || || ||||| || || | ||| |||| || | | || | | ||| ||| Sbjct 447360 GGAGGCGGCGAAAAAGGCGAGAACGTGACTAATGAAGTGATGCTCATCGGCGGTGAGAGT 447419 Query 16703 TTTAACCAGTCAGAAAAATCTTTTGATAAATCGACCTCTTCTACAGTCCAAAAAGAAGCA 16762 || ||||| | || ||| || | |||||| || ||| | |||||||| || || Sbjct 447420 TT--CCCAGTGACGAAGATCGGAAGACAGATCGACTTCCTCTGCGGTCCAAAACGACGCT 447477 Query 16763 ACAGCCTTTTTATACATTTTCCATATGTCTTCGTAAACAATAGGAAACA 16811 | || || || ||||||| ||||| ||| ||| || ||||||| Sbjct 447478 TCGGCTTTCTTGTACATTTCCCATACTTCTGGGTATTGGATCGGAAACA 447526 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 462339997568600