Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Gossypium_20barbadense_20[genbank_20GCA_5F001856525.1_202016-11-03]
29,751 sequences; 2,566,742,836 total letters
Query= NC_002642.1
Length=144575
Score E
Sequences producing significant alignments: (Bits) Value
seq22586 111 1e-19
>seq22586
Length=877411
Score = 111 bits (122), Expect = 1e-19
Identities = 565/889 (64%), Gaps = 45/889 (5%)
Strand=Plus/Plus
Query 15944 TTTTGATATTCACTAACTCTCTTTTCAAAGAAATTTGTTTTTCCTTCTAATGAAATATTT 16003
|||||||| || | |||||| || || |||||||| ||||| |||| || || || |
Sbjct 443527 TTTTGATACTCTCCAACTCTTTTCTCGAAGAAATTGGTTTTCCCTTGCAACGATATCAGT 443586
Query 16004 TCCATAAAATCAAAAGGATTTTTTGAACAA-TAGTATTTAT---CGCATCCCAATTCCAA 16059
||||| ||||||| || || || || | ||| | | || | || || |
Sbjct 443587 TCCATCCAATCAAATGGGTT----GACCACGTTGTACATCTTTCCGTACCCTAACGCTCC 443642
Query 16060 CAATAATCTATCCGCCACAAATTCTATATACTGTTTCATTAAATCACAGTTCATTCCTAT 16119
||| || | |||||| || || || || ||||| ||||||| || | |||||| || |
Sbjct 443643 CAACAACCGATCCGCTACGAACTCGATGTACTGACTCATTAACTCGCCGTTCATCCCAAC 443702
Query 16120 TAATTTAACAGGG-ATTGCTTCTGTTAAAAAAtttttttCTATATTAACCGCTTCAATGA 16178
|| ||||| | || || || || | | ||||| | ||||| || | |
Sbjct 443703 CAACGCG-CAGGGCAGAGCATCGCATACGAACTCCCTCTCTATGTCCACCGCGTCCCTTA 443761
Query 16179 TTATATCTCTTAC------TACACTA----TTTAACGGAGGGTTTAATAAGTGTTTAAAC 16228
||| |||| || | |||| || | |||||| || || ||
Sbjct 443762 CTATCCCTCTCACGCGTTCTTCACTCAGCTTTGACCGGAGGAG------AGAGT----AC 443811
Query 16229 ATTATACAAGCAAAATCACAATGCAATCCTTCGTCCCTACTTATTAACTCGTTTGAAAAT 16288
| | ||||| |||||||| || | ||||| || | |||||||||||||| ||
Sbjct 443812 AGCAAGCAAGCGAAATCACAGTGGAGACCTTCATCTCGTGAGATTAACTCGTTTGAGAAA 443871
Query 16289 GTAAGACCTGGCATTAGTCCTCGTTTTTTAATCCAAAATATAGCGGCAAATGAA---CCA 16345
|| | || ||||||| || | ||||| | ||||||||| |||| | || ||
Sbjct 443872 GTTAATCCGGGCATTAACCCCCTCTTTTTTAACCAAAATAT---GGCACAGAAACTTCCG 443928
Query 16346 GAAAAGAATATACCTTCAACTGCGGCAAATGCAACCAATCGCTCACCGTACGTTCTAttt 16405
|| || || || || || || ||||| || | || || || || | ||| | |
Sbjct 443929 GAGAAAAAGATCCCCTCTACGCAAGCAAAAGCGATTAACCGTTCGGCGAAAGTT---TCT 443985
Query 16406 ttactttctatccattttttagcccaatttgctttttgtttAACACAGTTCATGTTCTCT 16465
| || |||||||| ||||||| | ||||||| ||||| || ||||
Sbjct 443986 CCGCCGTCGATCCATTTCATAGCCCACTCGGCTTTTTTAGCCACACACGGCACCGTCTCG 444045
Query 16466 ATTGCATTAAATAAATAAtttttttCTTTGCTATCTAAAATATAAGTATCTATTAGTAAA 16525
|| || || | | || ||||| | | |||| || ||||| || | || | |
Sbjct 444046 ATGGCGCGGAAAAGACGGTTCTTTTCATCGGAATCTTTTATGTAAGTCTCGAGAAGGAGA 444105
Query 16526 CTATACATTTCTGAATGAATATTCTCCATTGCTATCTGAAAACCAT-AAAAGCATCTAGC 16584
|| ||||| || || || ||||| || || || || || ||||||| ||||||| | ||
Sbjct 444106 CTGTACATCTCGGAGTGGATATTTTCGATAGCGATTTGGAAACCATAAAAAGCA-CGCGC 444164
Query 16585 TTCGGATATTTGTACTTCAGAGTAAAACCTTTCTGCTAAGTTTTCGTTAACTATTCCATC 16644
||||| || || || || |||| | || | ||| || ||||| |||||
Sbjct 444165 CTCGGAGATCTGGACCTCTTTCATGAACCGAACAGCAAGGTTCTCAAGGACTATGCCATC 444224
Query 16645 GCTAGCTGCAAAAAACGCAAGTATGTGTTTAATAAAAtttttttCGTTATC--TGAAAGT 16702
| || || ||||| || || | ||| |||| || | | || | | ||| |||
Sbjct 444225 GGAGGCGGCGAAAAAGGCGAGAACGTGACTAATGAAGTGATGCTCATCGGCGGTGAGAGT 444284
Query 16703 TTTAACCAGTCAGAAAAATCTTTTGATAAATCGACCTCTTCTACAGTCCAAAAAGAAGCA 16762
|| ||||| | || ||| || | |||||| || ||| | |||||||| || ||
Sbjct 444285 TT--CCCAGTGACGAAGATCGGAAGACAGATCGACTTCCTCTGCGGTCCAAAACGACGCT 444342
Query 16763 ACAGCCTTTTTATACATTTTCCATATGTCTTCGTAAACAATAGGAAACA 16811
| || || || ||||||| ||||| ||| ||| || |||||||
Sbjct 444343 TCGGCTTTCTTGTACATTTCCCATACTTCTGGGTATTGGATCGGAAACA 444391
Score = 111 bits (122), Expect = 1e-19
Identities = 565/889 (64%), Gaps = 45/889 (5%)
Strand=Plus/Plus
Query 15944 TTTTGATATTCACTAACTCTCTTTTCAAAGAAATTTGTTTTTCCTTCTAATGAAATATTT 16003
|||||||| || | |||||| || || |||||||| ||||| |||| || || || |
Sbjct 446662 TTTTGATACTCTCCAACTCTTTTCTCGAAGAAATTGGTTTTCCCTTGCAACGATATCAGT 446721
Query 16004 TCCATAAAATCAAAAGGATTTTTTGAACAA-TAGTATTTAT---CGCATCCCAATTCCAA 16059
||||| ||||||| || || || || | ||| | | || | || || |
Sbjct 446722 TCCATCCAATCAAATGGGTT----GACCACGTTGTACATCTTTCCGTACCCTAACGCTCC 446777
Query 16060 CAATAATCTATCCGCCACAAATTCTATATACTGTTTCATTAAATCACAGTTCATTCCTAT 16119
||| || | |||||| || || || || ||||| ||||||| || | |||||| || |
Sbjct 446778 CAACAACCGATCCGCTACGAACTCGATGTACTGACTCATTAACTCGCCGTTCATCCCAAC 446837
Query 16120 TAATTTAACAGGG-ATTGCTTCTGTTAAAAAAtttttttCTATATTAACCGCTTCAATGA 16178
|| ||||| | || || || || | | ||||| | ||||| || | |
Sbjct 446838 CAACGCG-CAGGGCAGAGCATCGCATACGAACTCCCTCTCTATGTCCACCGCGTCCCTTA 446896
Query 16179 TTATATCTCTTAC------TACACTA----TTTAACGGAGGGTTTAATAAGTGTTTAAAC 16228
||| |||| || | |||| || | |||||| || || ||
Sbjct 446897 CTATCCCTCTCACGCGTTCTTCACTCAGCTTTGACCGGAGGAG------AGAGT----AC 446946
Query 16229 ATTATACAAGCAAAATCACAATGCAATCCTTCGTCCCTACTTATTAACTCGTTTGAAAAT 16288
| | ||||| |||||||| || | ||||| || | |||||||||||||| ||
Sbjct 446947 AGCAAGCAAGCGAAATCACAGTGGAGACCTTCATCTCGTGAGATTAACTCGTTTGAGAAA 447006
Query 16289 GTAAGACCTGGCATTAGTCCTCGTTTTTTAATCCAAAATATAGCGGCAAATGAA---CCA 16345
|| | || ||||||| || | ||||| | ||||||||| |||| | || ||
Sbjct 447007 GTTAATCCGGGCATTAACCCCCTCTTTTTTAACCAAAATAT---GGCACAGAAACTTCCG 447063
Query 16346 GAAAAGAATATACCTTCAACTGCGGCAAATGCAACCAATCGCTCACCGTACGTTCTAttt 16405
|| || || || || || || ||||| || | || || || || | ||| | |
Sbjct 447064 GAGAAAAAGATCCCCTCTACGCAAGCAAAAGCGATTAACCGTTCGGCGAAAGTT---TCT 447120
Query 16406 ttactttctatccattttttagcccaatttgctttttgtttAACACAGTTCATGTTCTCT 16465
| || |||||||| ||||||| | ||||||| ||||| || ||||
Sbjct 447121 CCGCCGTCGATCCATTTCATAGCCCACTCGGCTTTTTTAGCCACACACGGCACCGTCTCG 447180
Query 16466 ATTGCATTAAATAAATAAtttttttCTTTGCTATCTAAAATATAAGTATCTATTAGTAAA 16525
|| || || | | || ||||| | | |||| || ||||| || | || | |
Sbjct 447181 ATGGCGCGGAAAAGACGGTTCTTTTCATCGGAATCTTTTATGTAAGTCTCGAGAAGGAGA 447240
Query 16526 CTATACATTTCTGAATGAATATTCTCCATTGCTATCTGAAAACCAT-AAAAGCATCTAGC 16584
|| ||||| || || || ||||| || || || || || ||||||| ||||||| | ||
Sbjct 447241 CTGTACATCTCGGAGTGGATATTTTCGATAGCGATTTGGAAACCATAAAAAGCA-CGCGC 447299
Query 16585 TTCGGATATTTGTACTTCAGAGTAAAACCTTTCTGCTAAGTTTTCGTTAACTATTCCATC 16644
||||| || || || || |||| | || | ||| || ||||| |||||
Sbjct 447300 CTCGGAGATCTGGACCTCTTTCATGAACCGAACAGCAAGGTTCTCAAGGACTATGCCATC 447359
Query 16645 GCTAGCTGCAAAAAACGCAAGTATGTGTTTAATAAAAtttttttCGTTATC--TGAAAGT 16702
| || || ||||| || || | ||| |||| || | | || | | ||| |||
Sbjct 447360 GGAGGCGGCGAAAAAGGCGAGAACGTGACTAATGAAGTGATGCTCATCGGCGGTGAGAGT 447419
Query 16703 TTTAACCAGTCAGAAAAATCTTTTGATAAATCGACCTCTTCTACAGTCCAAAAAGAAGCA 16762
|| ||||| | || ||| || | |||||| || ||| | |||||||| || ||
Sbjct 447420 TT--CCCAGTGACGAAGATCGGAAGACAGATCGACTTCCTCTGCGGTCCAAAACGACGCT 447477
Query 16763 ACAGCCTTTTTATACATTTTCCATATGTCTTCGTAAACAATAGGAAACA 16811
| || || || ||||||| ||||| ||| ||| || |||||||
Sbjct 447478 TCGGCTTTCTTGTACATTTCCCATACTTCTGGGTATTGGATCGGAAACA 447526
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 462339997568600
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |