Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Gossypium_20barbadense_20[genbank_20GCA_5F001856525.1_202016-11-03]
29,751 sequences; 2,566,742,836 total letters
Query= NC_002686.2
Length=124784
Score E
Sequences producing significant alignments: (Bits) Value
seq26127 96.9 3e-15
seq8423 96.9 3e-15
seq23995 91.5 1e-13
seq19889 87.8 1e-12
>seq26127
Length=392893
Score = 96.9 bits (106), Expect = 3e-15
Identities = 95/123 (77%), Gaps = 0/123 (0%)
Strand=Plus/Plus
Query 20431 CAATTTTACGTTGCTAATAATGAATTGTCGTGTCAAATGTATCAACGATCCGCTGATATG 20490
|| || || ||||| ||| | || || || || ||||||||||| || || |||||||||
Sbjct 306896 CAGTTCTATGTTGCCAATGAGGAGTTATCTTGCCAAATGTATCAGCGTTCTGCTGATATG 306955
Query 20491 GGACTGGGTGTTCCTTTCAATATTGCAAGTTATGCGCTGCTTACGTATATGATTGCACAT 20550
|| ||||||| || || || |||||| |||||| || || || | |||||||| |||
Sbjct 306956 GGCTTGGGTGTGCCATTTAACATTGCATCTTATGCTCTCCTGACATGCATGATTGCTCAT 307015
Query 20551 GTT 20553
|||
Sbjct 307016 GTT 307018
>seq8423
Length=362193
Score = 96.9 bits (106), Expect = 3e-15
Identities = 95/123 (77%), Gaps = 0/123 (0%)
Strand=Plus/Plus
Query 20431 CAATTTTACGTTGCTAATAATGAATTGTCGTGTCAAATGTATCAACGATCCGCTGATATG 20490
|| || || ||||| ||| | || || || || ||||||||||| || || |||||||||
Sbjct 60970 CAGTTCTATGTTGCCAATGAGGAGTTATCTTGCCAAATGTATCAGCGTTCTGCTGATATG 61029
Query 20491 GGACTGGGTGTTCCTTTCAATATTGCAAGTTATGCGCTGCTTACGTATATGATTGCACAT 20550
|| ||||||| || || || |||||| |||||| || || || | |||||||| |||
Sbjct 61030 GGCTTGGGTGTGCCATTTAACATTGCATCTTATGCTCTTCTGACATGCATGATTGCTCAT 61089
Query 20551 GTT 20553
|||
Sbjct 61090 GTT 61092
>seq23995
Length=352753
Score = 91.5 bits (100), Expect = 1e-13
Identities = 94/123 (76%), Gaps = 0/123 (0%)
Strand=Plus/Plus
Query 20431 CAATTTTACGTTGCTAATAATGAATTGTCGTGTCAAATGTATCAACGATCCGCTGATATG 20490
||||| || ||||| ||| | || || || | |||||||||| || || |||||||||
Sbjct 106360 CAATTCTATGTTGCCAATGAGGAGTTATCTTACTAAATGTATCAGCGTTCTGCTGATATG 106419
Query 20491 GGACTGGGTGTTCCTTTCAATATTGCAAGTTATGCGCTGCTTACGTATATGATTGCACAT 20550
|| ||||||| || || || |||||| |||||| || || || | |||||||| |||
Sbjct 106420 GGCTTGGGTGTGCCATTTAACATTGCATCTTATGCTCTCCTGACATGCATGATTGCTCAT 106479
Query 20551 GTT 20553
|||
Sbjct 106480 GTT 106482
>seq19889
Length=234335
Score = 87.8 bits (96), Expect = 1e-12
Identities = 93/123 (76%), Gaps = 0/123 (0%)
Strand=Plus/Minus
Query 20431 CAATTTTACGTTGCTAATAATGAATTGTCGTGTCAAATGTATCAACGATCCGCTGATATG 20490
|| || || || || || | || || || || ||||||||||| || || |||||||||
Sbjct 220714 CAGTTCTATGTAGCCAACGAGGAGTTATCTTGCCAAATGTATCAGCGTTCTGCTGATATG 220655
Query 20491 GGACTGGGTGTTCCTTTCAATATTGCAAGTTATGCGCTGCTTACGTATATGATTGCACAT 20550
|| ||||||| || || || |||||| |||||| || || || | |||||||| |||
Sbjct 220654 GGCTTGGGTGTGCCATTTAACATTGCATCTTATGCTCTCCTGACATGCATGATTGCTCAT 220595
Query 20551 GTT 20553
|||
Sbjct 220594 GTT 220592
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 399039259748695
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |