Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Gossypium_20barbadense_20[genbank_20GCA_5F001856525.1_202016-11-03] 29,751 sequences; 2,566,742,836 total letters Query= NC_002686.2 Length=124784 Score E Sequences producing significant alignments: (Bits) Value seq26127 96.9 3e-15 seq8423 96.9 3e-15 seq23995 91.5 1e-13 seq19889 87.8 1e-12 >seq26127 Length=392893 Score = 96.9 bits (106), Expect = 3e-15 Identities = 95/123 (77%), Gaps = 0/123 (0%) Strand=Plus/Plus Query 20431 CAATTTTACGTTGCTAATAATGAATTGTCGTGTCAAATGTATCAACGATCCGCTGATATG 20490 || || || ||||| ||| | || || || || ||||||||||| || || ||||||||| Sbjct 306896 CAGTTCTATGTTGCCAATGAGGAGTTATCTTGCCAAATGTATCAGCGTTCTGCTGATATG 306955 Query 20491 GGACTGGGTGTTCCTTTCAATATTGCAAGTTATGCGCTGCTTACGTATATGATTGCACAT 20550 || ||||||| || || || |||||| |||||| || || || | |||||||| ||| Sbjct 306956 GGCTTGGGTGTGCCATTTAACATTGCATCTTATGCTCTCCTGACATGCATGATTGCTCAT 307015 Query 20551 GTT 20553 ||| Sbjct 307016 GTT 307018 >seq8423 Length=362193 Score = 96.9 bits (106), Expect = 3e-15 Identities = 95/123 (77%), Gaps = 0/123 (0%) Strand=Plus/Plus Query 20431 CAATTTTACGTTGCTAATAATGAATTGTCGTGTCAAATGTATCAACGATCCGCTGATATG 20490 || || || ||||| ||| | || || || || ||||||||||| || || ||||||||| Sbjct 60970 CAGTTCTATGTTGCCAATGAGGAGTTATCTTGCCAAATGTATCAGCGTTCTGCTGATATG 61029 Query 20491 GGACTGGGTGTTCCTTTCAATATTGCAAGTTATGCGCTGCTTACGTATATGATTGCACAT 20550 || ||||||| || || || |||||| |||||| || || || | |||||||| ||| Sbjct 61030 GGCTTGGGTGTGCCATTTAACATTGCATCTTATGCTCTTCTGACATGCATGATTGCTCAT 61089 Query 20551 GTT 20553 ||| Sbjct 61090 GTT 61092 >seq23995 Length=352753 Score = 91.5 bits (100), Expect = 1e-13 Identities = 94/123 (76%), Gaps = 0/123 (0%) Strand=Plus/Plus Query 20431 CAATTTTACGTTGCTAATAATGAATTGTCGTGTCAAATGTATCAACGATCCGCTGATATG 20490 ||||| || ||||| ||| | || || || | |||||||||| || || ||||||||| Sbjct 106360 CAATTCTATGTTGCCAATGAGGAGTTATCTTACTAAATGTATCAGCGTTCTGCTGATATG 106419 Query 20491 GGACTGGGTGTTCCTTTCAATATTGCAAGTTATGCGCTGCTTACGTATATGATTGCACAT 20550 || ||||||| || || || |||||| |||||| || || || | |||||||| ||| Sbjct 106420 GGCTTGGGTGTGCCATTTAACATTGCATCTTATGCTCTCCTGACATGCATGATTGCTCAT 106479 Query 20551 GTT 20553 ||| Sbjct 106480 GTT 106482 >seq19889 Length=234335 Score = 87.8 bits (96), Expect = 1e-12 Identities = 93/123 (76%), Gaps = 0/123 (0%) Strand=Plus/Minus Query 20431 CAATTTTACGTTGCTAATAATGAATTGTCGTGTCAAATGTATCAACGATCCGCTGATATG 20490 || || || || || || | || || || || ||||||||||| || || ||||||||| Sbjct 220714 CAGTTCTATGTAGCCAACGAGGAGTTATCTTGCCAAATGTATCAGCGTTCTGCTGATATG 220655 Query 20491 GGACTGGGTGTTCCTTTCAATATTGCAAGTTATGCGCTGCTTACGTATATGATTGCACAT 20550 || ||||||| || || || |||||| |||||| || || || | |||||||| ||| Sbjct 220654 GGCTTGGGTGTGCCATTTAACATTGCATCTTATGCTCTCCTGACATGCATGATTGCTCAT 220595 Query 20551 GTT 20553 ||| Sbjct 220594 GTT 220592 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 399039259748695