Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Gossypium_20barbadense_20[genbank_20GCA_5F001856525.1_202016-11-03]
29,751 sequences; 2,566,742,836 total letters
Query= NC_002687.1
Length=335593
Score E
Sequences producing significant alignments: (Bits) Value
seq8664 98.7 2e-15
seq12755 89.7 1e-12
>seq8664
Length=49552
Score = 98.7 bits (108), Expect = 2e-15
Identities = 102/134 (76%), Gaps = 0/134 (0%)
Strand=Plus/Plus
Query 248809 GATTTGGAGTACGATTTCTTTGCTTTCAAAACGCTGGAGAAATCGTATCTCCTCAAAATT 248868
|| || || ||||||| ||||| |||||||| ||||||| || |||||| | ||| ||
Sbjct 49111 GACTTTGACTACGATTACTTTGGCTTCAAAACCCTGGAGAGGTCTTATCTCTTGAAAGTT 49170
Query 248869 GATGGCAAGATCGTGGAACGAATTCAGCACATGTTGATGCGAGTGGCTGTCGGGATTCAC 248928
| || ||| | | ||| | |||||||||||| ||| | || ||||| || |||||
Sbjct 49171 CAAGGGAAGGTTATAGAAAGGCCTCAGCACATGTTAATGAGGGTTGCTGTTGGAATTCAT 49230
Query 248929 AAGGATGACATAGA 248942
||||||||||| ||
Sbjct 49231 AAGGATGACATTGA 49244
Score = 89.7 bits (98), Expect = 1e-12
Identities = 100/134 (75%), Gaps = 0/134 (0%)
Strand=Plus/Plus
Query 248809 GATTTGGAGTACGATTTCTTTGCTTTCAAAACGCTGGAGAAATCGTATCTCCTCAAAATT 248868
|| || || || |||| ||||| |||||||| ||||||| || |||||| | ||| ||
Sbjct 44686 GACTTTGACTATGATTACTTTGGCTTCAAAACCCTGGAGAGGTCTTATCTCTTGAAAGTT 44745
Query 248869 GATGGCAAGATCGTGGAACGAATTCAGCACATGTTGATGCGAGTGGCTGTCGGGATTCAC 248928
| || ||| | | ||| | |||||| ||||| ||| | || ||||| || |||||
Sbjct 44746 CAAGGGAAGGTTATAGAAAGGCCTCAGCATATGTTAATGAGGGTTGCTGTTGGAATTCAT 44805
Query 248929 AAGGATGACATAGA 248942
||||||||||| ||
Sbjct 44806 AAGGATGACATTGA 44819
>seq12755
Length=243795
Score = 89.7 bits (98), Expect = 1e-12
Identities = 100/134 (75%), Gaps = 0/134 (0%)
Strand=Plus/Plus
Query 248809 GATTTGGAGTACGATTTCTTTGCTTTCAAAACGCTGGAGAAATCGTATCTCCTCAAAATT 248868
|| || || || |||| ||||| |||||||| ||||||| || |||||| | ||| ||
Sbjct 39690 GACTTTGACTATGATTACTTTGGCTTCAAAACCCTGGAGAGGTCTTATCTCTTGAAAGTT 39749
Query 248869 GATGGCAAGATCGTGGAACGAATTCAGCACATGTTGATGCGAGTGGCTGTCGGGATTCAC 248928
| || ||| | | ||| | |||||| ||||| ||| | || ||||| || |||||
Sbjct 39750 CAAGGGAAGGTTATAGAAAGGCCTCAGCATATGTTAATGAGGGTTGCTGTTGGAATTCAT 39809
Query 248929 AAGGATGACATAGA 248942
||||||||||| ||
Sbjct 39810 AAGGATGACATTGA 39823
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 1073357096690368
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |