Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Gossypium_20barbadense_20[genbank_20GCA_5F001856525.1_202016-11-03] 29,751 sequences; 2,566,742,836 total letters Query= NC_002687.1 Length=335593 Score E Sequences producing significant alignments: (Bits) Value seq8664 98.7 2e-15 seq12755 89.7 1e-12 >seq8664 Length=49552 Score = 98.7 bits (108), Expect = 2e-15 Identities = 102/134 (76%), Gaps = 0/134 (0%) Strand=Plus/Plus Query 248809 GATTTGGAGTACGATTTCTTTGCTTTCAAAACGCTGGAGAAATCGTATCTCCTCAAAATT 248868 || || || ||||||| ||||| |||||||| ||||||| || |||||| | ||| || Sbjct 49111 GACTTTGACTACGATTACTTTGGCTTCAAAACCCTGGAGAGGTCTTATCTCTTGAAAGTT 49170 Query 248869 GATGGCAAGATCGTGGAACGAATTCAGCACATGTTGATGCGAGTGGCTGTCGGGATTCAC 248928 | || ||| | | ||| | |||||||||||| ||| | || ||||| || ||||| Sbjct 49171 CAAGGGAAGGTTATAGAAAGGCCTCAGCACATGTTAATGAGGGTTGCTGTTGGAATTCAT 49230 Query 248929 AAGGATGACATAGA 248942 ||||||||||| || Sbjct 49231 AAGGATGACATTGA 49244 Score = 89.7 bits (98), Expect = 1e-12 Identities = 100/134 (75%), Gaps = 0/134 (0%) Strand=Plus/Plus Query 248809 GATTTGGAGTACGATTTCTTTGCTTTCAAAACGCTGGAGAAATCGTATCTCCTCAAAATT 248868 || || || || |||| ||||| |||||||| ||||||| || |||||| | ||| || Sbjct 44686 GACTTTGACTATGATTACTTTGGCTTCAAAACCCTGGAGAGGTCTTATCTCTTGAAAGTT 44745 Query 248869 GATGGCAAGATCGTGGAACGAATTCAGCACATGTTGATGCGAGTGGCTGTCGGGATTCAC 248928 | || ||| | | ||| | |||||| ||||| ||| | || ||||| || ||||| Sbjct 44746 CAAGGGAAGGTTATAGAAAGGCCTCAGCATATGTTAATGAGGGTTGCTGTTGGAATTCAT 44805 Query 248929 AAGGATGACATAGA 248942 ||||||||||| || Sbjct 44806 AAGGATGACATTGA 44819 >seq12755 Length=243795 Score = 89.7 bits (98), Expect = 1e-12 Identities = 100/134 (75%), Gaps = 0/134 (0%) Strand=Plus/Plus Query 248809 GATTTGGAGTACGATTTCTTTGCTTTCAAAACGCTGGAGAAATCGTATCTCCTCAAAATT 248868 || || || || |||| ||||| |||||||| ||||||| || |||||| | ||| || Sbjct 39690 GACTTTGACTATGATTACTTTGGCTTCAAAACCCTGGAGAGGTCTTATCTCTTGAAAGTT 39749 Query 248869 GATGGCAAGATCGTGGAACGAATTCAGCACATGTTGATGCGAGTGGCTGTCGGGATTCAC 248928 | || ||| | | ||| | |||||| ||||| ||| | || ||||| || ||||| Sbjct 39750 CAAGGGAAGGTTATAGAAAGGCCTCAGCATATGTTAATGAGGGTTGCTGTTGGAATTCAT 39809 Query 248929 AAGGATGACATAGA 248942 ||||||||||| || Sbjct 39810 AAGGATGACATTGA 39823 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1073357096690368