Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Gossypium_20barbadense_20[genbank_20GCA_5F001856525.1_202016-11-03] 29,751 sequences; 2,566,742,836 total letters Query= NC_003027.1 Length=150773 Score E Sequences producing significant alignments: (Bits) Value seq22586 149 6e-31 seq29212 120 3e-22 seq28581 109 5e-19 >seq22586 Length=877411 Score = 149 bits (164), Expect = 6e-31 Identities = 373/562 (66%), Gaps = 5/562 (1%) Strand=Plus/Plus Query 14201 AAACACGCAAAATCACAATGAAGGCCCTCATCTCTACTAATAAGTTCGTTTGAAAATGTT 14260 || || || |||||||| || || || ||||||| || | |||||||| || ||| Sbjct 443815 AAGCAAGCGAAATCACAGTGGAGACCTTCATCTCGTGAGATTAACTCGTTTGAGAAAGTT 443874 Query 14261 AATCCTGGCATCAATCCTCGtttttttAACCAAAATATTGCAGCGAATGATCCGGAAAAG 14320 ||||| ||||| || || | ||||||||||||||||| ||| ||| |||||| || Sbjct 443875 AATCCGGGCATTAACCCCCTCTTTTTTAACCAAAATATGGCACAGAAACTTCCGGAGAAA 443934 Query 14321 AATATTCCCTCAACTGCAGCAAACGCTATTAATCGTTCTCCAAACGATGCTTTTTTGTTC 14380 || || ||||| || |||||| || ||||| ||||| | || | | || | || Sbjct 443935 AAGATCCCCTCTACGCAAGCAAAAGCGATTAACCGTTCGGCGAAAGTTTCTCCGCCG-TC 443993 Query 14381 GATATCCATTTTCTAGCCCATTCAGAtttttttttAATAAAATCCATTGTTTCAATAGCA 14440 | |||||||| ||||||| || | |||||| | | | || || || || || Sbjct 443994 G--ATCCATTTCATAGCCCACTCGGCTTTTTTAGCCACACACGGCACCGTCTCGATGGCG 444051 Query 14441 TTAAATAAATGTTCCTTCTCTTTAGTACTTGAAATGTATGTATCAATAAGTAAGCTATAC 14500 || | | | | ||| || | | | | ||||| || || | ||| | || ||| Sbjct 444052 CGGAAAAGACGGTTCTTTTCATCGGAATCTTTTATGTAAGTCTCGAGAAGGAGACTGTAC 444111 Query 14501 ATTTCAGAGTGTATGTTTTCCATAGCTATCTGAAAACCATAAAAACATCTAGCTTCTGAC 14560 || || ||||| || ||||| ||||| || || |||||||||||| | || || || Sbjct 444112 ATCTCGGAGTGGATATTTTCGATAGCGATTTGGAAACCATAAAAAGCACGCGCCTCGGAG 444171 Query 14561 CATTGTACCTCTGAGTAAAATCTTTCGGCCAAATTTTCATTAACTATACCATCACTAGCT 14620 || |||||| || | | || | || ||| ||||| ||||| || Sbjct 444172 ATCTGGACCTCTTTCATGAACCGAACAGCAAGGTTCTCAAGGACTATGCCATCGGAGGCG 444231 Query 14621 GCAAAAAATGCCAATATGTTTTTAATAAAGTATTGCTCTTCATTGCTGAGTTTTTTCCAA 14680 || ||||| || | | || |||| |||| ||||| || | |||| ||| ||| Sbjct 444232 GCGAAAAAGGCGAGAACGTGACTAATGAAGTGATGCTCATCGGCGGTGAGAGTTTCCCAG 444291 Query 14681 TCGGCTAA-ATCCTTAGAAAGATCTACTTCATCAACTGTCCAAAAACTAGCAACAGCTTT 14739 | | | || ||| ||| ||||| ||||| || | |||||||| || | ||||| Sbjct 444292 T-GACGAAGATCGGAAGACAGATCGACTTCCTCTGCGGTCCAAAACGACGCTTCGGCTTT 444350 Query 14740 TTTATACATTACCCATATTTCT 14761 || |||||| |||||| |||| Sbjct 444351 CTTGTACATTTCCCATACTTCT 444372 Score = 149 bits (164), Expect = 6e-31 Identities = 373/562 (66%), Gaps = 5/562 (1%) Strand=Plus/Plus Query 14201 AAACACGCAAAATCACAATGAAGGCCCTCATCTCTACTAATAAGTTCGTTTGAAAATGTT 14260 || || || |||||||| || || || ||||||| || | |||||||| || ||| Sbjct 446950 AAGCAAGCGAAATCACAGTGGAGACCTTCATCTCGTGAGATTAACTCGTTTGAGAAAGTT 447009 Query 14261 AATCCTGGCATCAATCCTCGtttttttAACCAAAATATTGCAGCGAATGATCCGGAAAAG 14320 ||||| ||||| || || | ||||||||||||||||| ||| ||| |||||| || Sbjct 447010 AATCCGGGCATTAACCCCCTCTTTTTTAACCAAAATATGGCACAGAAACTTCCGGAGAAA 447069 Query 14321 AATATTCCCTCAACTGCAGCAAACGCTATTAATCGTTCTCCAAACGATGCTTTTTTGTTC 14380 || || ||||| || |||||| || ||||| ||||| | || | | || | || Sbjct 447070 AAGATCCCCTCTACGCAAGCAAAAGCGATTAACCGTTCGGCGAAAGTTTCTCCGCCG-TC 447128 Query 14381 GATATCCATTTTCTAGCCCATTCAGAtttttttttAATAAAATCCATTGTTTCAATAGCA 14440 | |||||||| ||||||| || | |||||| | | | || || || || || Sbjct 447129 G--ATCCATTTCATAGCCCACTCGGCTTTTTTAGCCACACACGGCACCGTCTCGATGGCG 447186 Query 14441 TTAAATAAATGTTCCTTCTCTTTAGTACTTGAAATGTATGTATCAATAAGTAAGCTATAC 14500 || | | | | ||| || | | | | ||||| || || | ||| | || ||| Sbjct 447187 CGGAAAAGACGGTTCTTTTCATCGGAATCTTTTATGTAAGTCTCGAGAAGGAGACTGTAC 447246 Query 14501 ATTTCAGAGTGTATGTTTTCCATAGCTATCTGAAAACCATAAAAACATCTAGCTTCTGAC 14560 || || ||||| || ||||| ||||| || || |||||||||||| | || || || Sbjct 447247 ATCTCGGAGTGGATATTTTCGATAGCGATTTGGAAACCATAAAAAGCACGCGCCTCGGAG 447306 Query 14561 CATTGTACCTCTGAGTAAAATCTTTCGGCCAAATTTTCATTAACTATACCATCACTAGCT 14620 || |||||| || | | || | || ||| ||||| ||||| || Sbjct 447307 ATCTGGACCTCTTTCATGAACCGAACAGCAAGGTTCTCAAGGACTATGCCATCGGAGGCG 447366 Query 14621 GCAAAAAATGCCAATATGTTTTTAATAAAGTATTGCTCTTCATTGCTGAGTTTTTTCCAA 14680 || ||||| || | | || |||| |||| ||||| || | |||| ||| ||| Sbjct 447367 GCGAAAAAGGCGAGAACGTGACTAATGAAGTGATGCTCATCGGCGGTGAGAGTTTCCCAG 447426 Query 14681 TCGGCTAA-ATCCTTAGAAAGATCTACTTCATCAACTGTCCAAAAACTAGCAACAGCTTT 14739 | | | || ||| ||| ||||| ||||| || | |||||||| || | ||||| Sbjct 447427 T-GACGAAGATCGGAAGACAGATCGACTTCCTCTGCGGTCCAAAACGACGCTTCGGCTTT 447485 Query 14740 TTTATACATTACCCATATTTCT 14761 || |||||| |||||| |||| Sbjct 447486 CTTGTACATTTCCCATACTTCT 447507 >seq29212 Length=358297 Score = 120 bits (132), Expect = 3e-22 Identities = 362/557 (65%), Gaps = 3/557 (1%) Strand=Plus/Minus Query 14201 AAACACGCAAAATCACAATGAAGGCCCTCATCTCTACTAATAAGTTCGTTTGAAAATGTT 14260 || || ||||| || ||||| || || ||||||| | || | |||||||| || ||| Sbjct 223226 AAGCAAGCAAAGTCGCAATGGAGACCTTCATCTCGAGAGATCAACTCGTTTGAGAAAGTT 223167 Query 14261 AATCCTGGCATCAATCCTCGtttttttAACCAAAATATTGCAGCGAATGATCCGGAAAAG 14320 ||||| ||||| || || || ||||||||||||||||| ||| ||| ||||| || Sbjct 223166 AATCCAGGCATTAACCCGCGCTTTTTTAACCAAAATATCGCACAGAAACTGCCGGAGAAA 223107 Query 14321 AATATTCCCTCAACTGCAGCAAACGCTATTAATCGTTCTCCAAACGATGCTTTTTTGTTC 14380 ||||| || || || ||| || || ||||| ||||| |||| | | | | || Sbjct 223106 AATATGCCTTCTACGCAAGCGAAAGCGATTAACCGTTCGGCAAAAGCTTCGCCGCCG-TC 223048 Query 14381 GATATCCATTTTCTAGCCCATTCAGAtttttttttAATAAAATCCATTGTTTCAATAGCA 14440 | |||||||| |||||| || | |||||| | | || |||||| |||| Sbjct 223047 G--ATCCATTTCAAAGCCCAATCGGCTTTTTTAGCCACGCACGGCACCGTTTCAGTAGCG 222990 Query 14441 TTAAATAAATGTTCCTTCTCTTTAGTACTTGAAATGTATGTATCAATAAGTAAGCTATAC 14500 | || | | | || || | | | | ||| || || || | || | |||||| Sbjct 222989 TGGAAGAGGCGGTTTTTTTCGGTGGAATCTTTAATATAAGTTTCGAGGAGGAGACTATAC 222930 Query 14501 ATTTCAGAGTGTATGTTTTCCATAGCTATCTGAAAACCATAAAAACATCTAGCTTCTGAC 14560 || |||||||| || || || || || || || || |||||||| | || || | Sbjct 222929 ATCTCAGAGTGGATATTCTCGATGGCGATTTGGAATCCATAAAATGCACGCGCCTCCGCG 222870 Query 14561 CATTGTACCTCTGAGTAAAATCTTTCGGCCAAATTTTCATTAACTATACCATCACTAGCT 14620 ||| |||||| || | | || | |||||| ||| || ||||| || Sbjct 222869 ATTTGGACCTCTTTCATGAAGCGAACAGCGAGATTTTCTAGAACGATGCCATCGGATGCG 222810 Query 14621 GCAAAAAATGCCAATATGTTTTTAATAAAGTATTGCTCTTCATTGCTGAGTTTTTTCCAA 14680 || || || || | | | | || |||| | || || | | || |||| ||| Sbjct 222809 GCGAAGAAGGCAAGGACATGACTGATGAAGTGGCGTTCGTCGGCGTTAAGATTTTGCCAG 222750 Query 14681 TCGGCTAAATCCTTAGAAAGATCTACTTCATCAACTGTCCAAAAACTAGCAACAGCTTTT 14740 | | | ||| ||| ||||| ||||| || | ||||||||| || | ||||| Sbjct 222749 TGTGGAAGATCGGAAGAGAGATCAACTTCCTCGGCAGTCCAAAAAGAGGCTTCGGCTTTC 222690 Query 14741 TTATACATTACCCATAT 14757 ||||||||| ||||||| Sbjct 222689 TTATACATTTCCCATAT 222673 >seq28581 Length=397638 Score = 109 bits (120), Expect = 5e-19 Identities = 304/465 (65%), Gaps = 26/465 (6%) Strand=Plus/Plus Query 13913 TTTTGATATTCACTAACTCTTTTTTCAAAGAAGTTAGTTTTACCTTCCAGTGATATATTT 13972 || ||||| || | |||||| || || ||||| || ||||| |||| || ||| || | Sbjct 33792 TTCTGATACTCTCCAACTCTCTTCTCGAAGAAATTGGTTTTCCCTTGCAATGAAATTAGT 33851 Query 13973 TCCATAAAATCAAATGGATTTGTTGACATAAACACTTTATCACAACCTAGTTCTAATAGT 14032 ||||| ||||||| || || | | | ||| ||| || | |||| || || Sbjct 33852 TCCATCCAATCAAAAGGGTTAGCCGCATTGTACATTTTGCCATACCCTAAAGCTCCTAAC 33911 Query 14033 AATCTATCCGCAATGAACTCAATATATTGAGACATTAAATCACAATTCATACCTATTAGT 14092 || | |||||||| ||||||||| |||||| ||| || |||| |||||| || | || Sbjct 33912 AACCGATCCGCAACGAACTCAATGTATTGACTCATCAACTCACCATTCATCCCAACTAAC 33971 Query 14093 TTTACAGGAATTATATTGGTTAAAAATTCTTTTTCTATAGACACAGCCTCGTTTATAATA 14152 ||||| | | || ||| || | |||||| |||| || || | | || Sbjct 33972 GCGCAAGGAAGAGCGTCGCATACAAACTCCCTCTCTATATACACCGCATCACTCACTATT 34031 Query 14153 ATCGTAATAAT---TTCA-TTAG---------AAGGAGGATATTTTAGATGTTTAAAAAT 14199 | | | |||| |||| |||||| ||| || | | Sbjct 34032 CCCTTCACGCGCTCTTCACTTAGCTTTGACTGAAGGAG--------AGA-GT----ACAG 34078 Query 14200 TAAACACGCAAAATCACAATGAAGGCCCTCATCTCTACTAATAAGTTCGTTTGAAAATGT 14259 || || ||||| || ||||| || || ||||||| | || | |||||||| || || Sbjct 34079 CAAGCAAGCAAAGTCGCAATGGAGACCTTCATCTCGAGAGATCAACTCGTTTGAGAAAGT 34138 Query 14260 TAATCCTGGCATCAATCCTCGtttttttAACCAAAATATTGCAGCGAATGATCCGGAAAA 14319 |||||| ||||| || || || ||||||||||||||||| || ||| ||||| || Sbjct 34139 TAATCCAGGCATTAACCCGCGCTTTTTTAACCAAAATATCGCGCAGAAACTGCCGGAGAA 34198 Query 14320 GAATATTCCCTCAACTGCAGCAAACGCTATTAATCGTTCTCCAAA 14364 ||||| || || || ||| || || ||||| ||||| |||| Sbjct 34199 AAATATGCCTTCTACGCAAGCGAAAGCGATTAACCGTTCGGCAAA 34243 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 482166221700680