Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Gossypium_20barbadense_20[genbank_20GCA_5F001856525.1_202016-11-03]
29,751 sequences; 2,566,742,836 total letters
Query= NC_003094.2
Length=130759
Score E
Sequences producing significant alignments: (Bits) Value
seq5610 96.9 3e-15
seq2874 96.9 3e-15
seq13178 89.7 4e-13
seq6889 84.2 2e-11
>seq5610
Length=141783
Score = 96.9 bits (106), Expect = 3e-15
Identities = 143/203 (70%), Gaps = 0/203 (0%)
Strand=Plus/Plus
Query 24832 ATGCAGATATTTGTTAAAACCTTAACCGGCAAAACGATAACCGTCGATGTCGAATCGAGC 24891
|||||||| ||||| || || || ||||||||||| || ||| | || || ||| |
Sbjct 62433 ATGCAGATTTTTGTCAAGACTTTGACCGGCAAAACAATCACCTTGGAGGTTGAAAGCTCC 62492
Query 24892 GACAGTGTAGAAACTGTTAAGGAAAAAATTGCTGCAAAAGAAGGCGTACCGGTTGACCAG 24951
|| | | || | |||||||| ||| ||| | || ||||| | || ||| |||
Sbjct 62493 GATACCATTGACAATGTTAAGGCAAAGATTCAGGATAAGGAAGGAATCCCACCTGATCAG 62552
Query 24952 CAACGTTTAATATATGCGGGCAAACAACTGGAAGATTCCATGACTATGAACGATTACAGC 25011
||| | | || | ||| ||||||||| |||||||| | |||| || ||||| | |
Sbjct 62553 CAAAGGCTCATCTTTGCCGGCAAACAATTGGAAGATGGGAGGACTTTGGCTGATTATAAC 62612
Query 25012 ATACAGAAAGAGGCCACGCTTCA 25034
|| ||||||||| | || |||||
Sbjct 62613 ATTCAGAAAGAGTCTACCCTTCA 62635
Score = 91.5 bits (100), Expect = 1e-13
Identities = 145/207 (70%), Gaps = 6/207 (3%)
Strand=Plus/Plus
Query 24831 CATGCAGATATTTGTTAAAACCTTAACCGGCAAAACGATAACCGTCGATGTCGAATCGAG 24890
|||||| || ||||| ||||||||||||||||| || || ||| |||| ||||| |||
Sbjct 62204 CATGCAAATCTTTGTCAAAACCTTAACCGGCAAGACCATCACCCTCGAAGTCGA---GAG 62260
Query 24891 ---CGACAGTGTAGAAACTGTTAAGGAAAAAATTGCTGCAAAAGAAGGCGTACCGGTTGA 24947
||||| | || | ||||||| || ||| | || ||||| | || |||
Sbjct 62261 TTCCGACACCATCGACAACGTTAAGGCCAAGATTCAAGACAAGGAAGGAATCCCACCTGA 62320
Query 24948 CCAGCAACGTTTAATATATGCGGGCAAACAACTGGAAGATTCCATGACTATGAACGATTA 25007
||| || ||||| || | || ||||||||| |||||||| | ||| || |||||
Sbjct 62321 CCAACAGCGTTTGATCTTCGCTGGCAAACAATTGGAAGATGGGAGGACCTTGGCTGATTA 62380
Query 25008 CAGCATACAGAAAGAGGCCACGCTTCA 25034
| || || || || |||| |||||
Sbjct 62381 TAATATCCAAAAGGAATCCACCCTTCA 62407
>seq2874
Length=261101
Score = 96.9 bits (106), Expect = 3e-15
Identities = 143/203 (70%), Gaps = 0/203 (0%)
Strand=Plus/Plus
Query 24832 ATGCAGATATTTGTTAAAACCTTAACCGGCAAAACGATAACCGTCGATGTCGAATCGAGC 24891
|||||||| ||||| || || || ||||||||||| || ||| | || || ||| |
Sbjct 216078 ATGCAGATTTTTGTCAAGACTTTGACCGGCAAAACAATCACCTTGGAGGTTGAAAGCTCC 216137
Query 24892 GACAGTGTAGAAACTGTTAAGGAAAAAATTGCTGCAAAAGAAGGCGTACCGGTTGACCAG 24951
|| | | || | |||||||| ||| ||| | || ||||| | || ||| |||
Sbjct 216138 GATACCATTGACAATGTTAAGGCAAAGATTCAGGATAAGGAAGGAATCCCACCTGATCAG 216197
Query 24952 CAACGTTTAATATATGCGGGCAAACAACTGGAAGATTCCATGACTATGAACGATTACAGC 25011
||| | | || | ||| ||||||||| |||||||| | |||| || ||||| | |
Sbjct 216198 CAAAGGCTCATCTTTGCCGGCAAACAATTGGAAGATGGGAGGACTTTGGCTGATTATAAC 216257
Query 25012 ATACAGAAAGAGGCCACGCTTCA 25034
|| ||||||||| | || |||||
Sbjct 216258 ATTCAGAAAGAGTCTACCCTTCA 216280
Score = 91.5 bits (100), Expect = 1e-13
Identities = 145/207 (70%), Gaps = 6/207 (3%)
Strand=Plus/Plus
Query 24831 CATGCAGATATTTGTTAAAACCTTAACCGGCAAAACGATAACCGTCGATGTCGAATCGAG 24890
|||||| || ||||| ||||||||||||||||| || || ||| |||| ||||| |||
Sbjct 215849 CATGCAAATCTTTGTCAAAACCTTAACCGGCAAGACCATCACCCTCGAAGTCGA---GAG 215905
Query 24891 ---CGACAGTGTAGAAACTGTTAAGGAAAAAATTGCTGCAAAAGAAGGCGTACCGGTTGA 24947
||||| | || | ||||||| || ||| | || ||||| | || |||
Sbjct 215906 TTCCGACACCATCGACAACGTTAAGGCCAAGATTCAAGACAAGGAAGGAATCCCACCTGA 215965
Query 24948 CCAGCAACGTTTAATATATGCGGGCAAACAACTGGAAGATTCCATGACTATGAACGATTA 25007
||| || ||||| || | || ||||||||| |||||||| | ||| || |||||
Sbjct 215966 CCAACAGCGTTTGATCTTCGCTGGCAAACAATTGGAAGATGGGAGGACCTTGGCTGATTA 216025
Query 25008 CAGCATACAGAAAGAGGCCACGCTTCA 25034
| || || || || |||| |||||
Sbjct 216026 TAATATCCAAAAGGAATCCACCCTTCA 216052
>seq13178
Length=14983
Score = 89.7 bits (98), Expect = 4e-13
Identities = 144/206 (70%), Gaps = 6/206 (3%)
Strand=Plus/Plus
Query 24832 ATGCAGATATTTGTTAAAACCTTAACCGGCAAAACGATAACCGTCGATGTCGAATCGAGC 24891
|||||||| || || ||||||||||||||||| || || ||| |||| ||||| ||||
Sbjct 11747 ATGCAGATCTTCGTCAAAACCTTAACCGGCAAGACCATCACCCTCGAAGTCGA---GAGC 11803
Query 24892 ---GACAGTGTAGAAACTGTTAAGGAAAAAATTGCTGCAAAAGAAGGCGTACCGGTTGAC 24948
|||| | || | ||| ||| |||||| | || |||||| | || |||
Sbjct 11804 TCTGACACCATCGATAATGTAAAGTCTAAAATTCAAGACAAGGAAGGCATCCCACCAGAC 11863
Query 24949 CAGCAACGTTTAATATATGCGGGCAAACAACTGGAAGATTCCATGACTATGAACGATTAC 25008
||||| ||| | || | || |||||||| || ||||| | || || |||||||
Sbjct 11864 CAGCAGCGTCTCATCTTCGCCGGCAAACAGCTCGAAGACGGCCGTACCTTGGCCGATTAC 11923
Query 25009 AGCATACAGAAAGAGGCCACGCTTCA 25034
| ||| ||||| || |||| || ||
Sbjct 11924 AACATCCAGAAGGAATCCACCCTCCA 11949
Score = 84.2 bits (92), Expect = 2e-11
Identities = 143/206 (69%), Gaps = 6/206 (3%)
Strand=Plus/Plus
Query 24832 ATGCAGATATTTGTTAAAACCTTAACCGGCAAAACGATAACCGTCGATGTCGAATCGAG- 24890
|||||||| || || ||||||||||||||||| || || ||| |||| ||||| |||
Sbjct 11519 ATGCAGATCTTCGTCAAAACCTTAACCGGCAAGACCATCACCCTCGAAGTCGA---GAGC 11575
Query 24891 --CGACAGTGTAGAAACTGTTAAGGAAAAAATTGCTGCAAAAGAAGGCGTACCGGTTGAC 24948
||||| | || | ||| ||| ||||| | || |||||| | || |||
Sbjct 11576 TCCGACACCATCGATAATGTGAAGTCTAAAATCCAAGACAAGGAAGGCATCCCACCAGAC 11635
Query 24949 CAGCAACGTTTAATATATGCGGGCAAACAACTGGAAGATTCCATGACTATGAACGATTAC 25008
||||| ||| | || | || || ||||| || |||||| | || || |||||||
Sbjct 11636 CAGCAGCGTCTCATCTTCGCCGGAAAACAGCTCGAAGATGGCCGTACCTTGGCCGATTAC 11695
Query 25009 AGCATACAGAAAGAGGCCACGCTTCA 25034
| ||| ||||| || |||| || ||
Sbjct 11696 AACATCCAGAAGGAATCCACCCTCCA 11721
>seq6889
Length=136205
Score = 84.2 bits (92), Expect = 2e-11
Identities = 158/231 (68%), Gaps = 6/231 (3%)
Strand=Plus/Plus
Query 24832 ATGCAGATATTTGTTAAAACCTTAACCGGCAAAACGATAACCGTCGATGTCGAATCGAG- 24890
|||||||| || || ||||||||||||||||| || || ||| |||| ||||| |||
Sbjct 105741 ATGCAGATCTTCGTCAAAACCTTAACCGGCAAGACCATCACCCTCGAAGTCGA---GAGC 105797
Query 24891 --CGACAGTGTAGAAACTGTTAAGGAAAAAATTGCTGCAAAAGAAGGCGTACCGGTTGAC 24948
||||| | || | ||| ||| |||||| | || |||||| | || |||
Sbjct 105798 TCCGACACCATCGATAATGTGAAGTCTAAAATTCAAGACAAGGAAGGCATCCCACCAGAC 105857
Query 24949 CAGCAACGTTTAATATATGCGGGCAAACAACTGGAAGATTCCATGACTATGAACGATTAC 25008
||||| ||| | || | || || ||||| || || || | || || |||||||
Sbjct 105858 CAGCAGCGTCTCATCTTCGCCGGAAAACAGCTCGAGGACGGCCGTACCTTGGCCGATTAC 105917
Query 25009 AGCATACAGAAAGAGGCCACGCTTCATTTAGTGTTACGATTGCGCGGAGGT 25059
| ||| ||||| || |||| || || | || ||||| | || || |||
Sbjct 105918 AACATCCAGAAGGAATCCACCCTCCACCTTGTCTTACGTCTTCGTGGGGGT 105968
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 418152327021920
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |