Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Gossypium_20barbadense_20[genbank_20GCA_5F001856525.1_202016-11-03] 29,751 sequences; 2,566,742,836 total letters Query= NC_003094.2 Length=130759 Score E Sequences producing significant alignments: (Bits) Value seq5610 96.9 3e-15 seq2874 96.9 3e-15 seq13178 89.7 4e-13 seq6889 84.2 2e-11 >seq5610 Length=141783 Score = 96.9 bits (106), Expect = 3e-15 Identities = 143/203 (70%), Gaps = 0/203 (0%) Strand=Plus/Plus Query 24832 ATGCAGATATTTGTTAAAACCTTAACCGGCAAAACGATAACCGTCGATGTCGAATCGAGC 24891 |||||||| ||||| || || || ||||||||||| || ||| | || || ||| | Sbjct 62433 ATGCAGATTTTTGTCAAGACTTTGACCGGCAAAACAATCACCTTGGAGGTTGAAAGCTCC 62492 Query 24892 GACAGTGTAGAAACTGTTAAGGAAAAAATTGCTGCAAAAGAAGGCGTACCGGTTGACCAG 24951 || | | || | |||||||| ||| ||| | || ||||| | || ||| ||| Sbjct 62493 GATACCATTGACAATGTTAAGGCAAAGATTCAGGATAAGGAAGGAATCCCACCTGATCAG 62552 Query 24952 CAACGTTTAATATATGCGGGCAAACAACTGGAAGATTCCATGACTATGAACGATTACAGC 25011 ||| | | || | ||| ||||||||| |||||||| | |||| || ||||| | | Sbjct 62553 CAAAGGCTCATCTTTGCCGGCAAACAATTGGAAGATGGGAGGACTTTGGCTGATTATAAC 62612 Query 25012 ATACAGAAAGAGGCCACGCTTCA 25034 || ||||||||| | || ||||| Sbjct 62613 ATTCAGAAAGAGTCTACCCTTCA 62635 Score = 91.5 bits (100), Expect = 1e-13 Identities = 145/207 (70%), Gaps = 6/207 (3%) Strand=Plus/Plus Query 24831 CATGCAGATATTTGTTAAAACCTTAACCGGCAAAACGATAACCGTCGATGTCGAATCGAG 24890 |||||| || ||||| ||||||||||||||||| || || ||| |||| ||||| ||| Sbjct 62204 CATGCAAATCTTTGTCAAAACCTTAACCGGCAAGACCATCACCCTCGAAGTCGA---GAG 62260 Query 24891 ---CGACAGTGTAGAAACTGTTAAGGAAAAAATTGCTGCAAAAGAAGGCGTACCGGTTGA 24947 ||||| | || | ||||||| || ||| | || ||||| | || ||| Sbjct 62261 TTCCGACACCATCGACAACGTTAAGGCCAAGATTCAAGACAAGGAAGGAATCCCACCTGA 62320 Query 24948 CCAGCAACGTTTAATATATGCGGGCAAACAACTGGAAGATTCCATGACTATGAACGATTA 25007 ||| || ||||| || | || ||||||||| |||||||| | ||| || ||||| Sbjct 62321 CCAACAGCGTTTGATCTTCGCTGGCAAACAATTGGAAGATGGGAGGACCTTGGCTGATTA 62380 Query 25008 CAGCATACAGAAAGAGGCCACGCTTCA 25034 | || || || || |||| ||||| Sbjct 62381 TAATATCCAAAAGGAATCCACCCTTCA 62407 >seq2874 Length=261101 Score = 96.9 bits (106), Expect = 3e-15 Identities = 143/203 (70%), Gaps = 0/203 (0%) Strand=Plus/Plus Query 24832 ATGCAGATATTTGTTAAAACCTTAACCGGCAAAACGATAACCGTCGATGTCGAATCGAGC 24891 |||||||| ||||| || || || ||||||||||| || ||| | || || ||| | Sbjct 216078 ATGCAGATTTTTGTCAAGACTTTGACCGGCAAAACAATCACCTTGGAGGTTGAAAGCTCC 216137 Query 24892 GACAGTGTAGAAACTGTTAAGGAAAAAATTGCTGCAAAAGAAGGCGTACCGGTTGACCAG 24951 || | | || | |||||||| ||| ||| | || ||||| | || ||| ||| Sbjct 216138 GATACCATTGACAATGTTAAGGCAAAGATTCAGGATAAGGAAGGAATCCCACCTGATCAG 216197 Query 24952 CAACGTTTAATATATGCGGGCAAACAACTGGAAGATTCCATGACTATGAACGATTACAGC 25011 ||| | | || | ||| ||||||||| |||||||| | |||| || ||||| | | Sbjct 216198 CAAAGGCTCATCTTTGCCGGCAAACAATTGGAAGATGGGAGGACTTTGGCTGATTATAAC 216257 Query 25012 ATACAGAAAGAGGCCACGCTTCA 25034 || ||||||||| | || ||||| Sbjct 216258 ATTCAGAAAGAGTCTACCCTTCA 216280 Score = 91.5 bits (100), Expect = 1e-13 Identities = 145/207 (70%), Gaps = 6/207 (3%) Strand=Plus/Plus Query 24831 CATGCAGATATTTGTTAAAACCTTAACCGGCAAAACGATAACCGTCGATGTCGAATCGAG 24890 |||||| || ||||| ||||||||||||||||| || || ||| |||| ||||| ||| Sbjct 215849 CATGCAAATCTTTGTCAAAACCTTAACCGGCAAGACCATCACCCTCGAAGTCGA---GAG 215905 Query 24891 ---CGACAGTGTAGAAACTGTTAAGGAAAAAATTGCTGCAAAAGAAGGCGTACCGGTTGA 24947 ||||| | || | ||||||| || ||| | || ||||| | || ||| Sbjct 215906 TTCCGACACCATCGACAACGTTAAGGCCAAGATTCAAGACAAGGAAGGAATCCCACCTGA 215965 Query 24948 CCAGCAACGTTTAATATATGCGGGCAAACAACTGGAAGATTCCATGACTATGAACGATTA 25007 ||| || ||||| || | || ||||||||| |||||||| | ||| || ||||| Sbjct 215966 CCAACAGCGTTTGATCTTCGCTGGCAAACAATTGGAAGATGGGAGGACCTTGGCTGATTA 216025 Query 25008 CAGCATACAGAAAGAGGCCACGCTTCA 25034 | || || || || |||| ||||| Sbjct 216026 TAATATCCAAAAGGAATCCACCCTTCA 216052 >seq13178 Length=14983 Score = 89.7 bits (98), Expect = 4e-13 Identities = 144/206 (70%), Gaps = 6/206 (3%) Strand=Plus/Plus Query 24832 ATGCAGATATTTGTTAAAACCTTAACCGGCAAAACGATAACCGTCGATGTCGAATCGAGC 24891 |||||||| || || ||||||||||||||||| || || ||| |||| ||||| |||| Sbjct 11747 ATGCAGATCTTCGTCAAAACCTTAACCGGCAAGACCATCACCCTCGAAGTCGA---GAGC 11803 Query 24892 ---GACAGTGTAGAAACTGTTAAGGAAAAAATTGCTGCAAAAGAAGGCGTACCGGTTGAC 24948 |||| | || | ||| ||| |||||| | || |||||| | || ||| Sbjct 11804 TCTGACACCATCGATAATGTAAAGTCTAAAATTCAAGACAAGGAAGGCATCCCACCAGAC 11863 Query 24949 CAGCAACGTTTAATATATGCGGGCAAACAACTGGAAGATTCCATGACTATGAACGATTAC 25008 ||||| ||| | || | || |||||||| || ||||| | || || ||||||| Sbjct 11864 CAGCAGCGTCTCATCTTCGCCGGCAAACAGCTCGAAGACGGCCGTACCTTGGCCGATTAC 11923 Query 25009 AGCATACAGAAAGAGGCCACGCTTCA 25034 | ||| ||||| || |||| || || Sbjct 11924 AACATCCAGAAGGAATCCACCCTCCA 11949 Score = 84.2 bits (92), Expect = 2e-11 Identities = 143/206 (69%), Gaps = 6/206 (3%) Strand=Plus/Plus Query 24832 ATGCAGATATTTGTTAAAACCTTAACCGGCAAAACGATAACCGTCGATGTCGAATCGAG- 24890 |||||||| || || ||||||||||||||||| || || ||| |||| ||||| ||| Sbjct 11519 ATGCAGATCTTCGTCAAAACCTTAACCGGCAAGACCATCACCCTCGAAGTCGA---GAGC 11575 Query 24891 --CGACAGTGTAGAAACTGTTAAGGAAAAAATTGCTGCAAAAGAAGGCGTACCGGTTGAC 24948 ||||| | || | ||| ||| ||||| | || |||||| | || ||| Sbjct 11576 TCCGACACCATCGATAATGTGAAGTCTAAAATCCAAGACAAGGAAGGCATCCCACCAGAC 11635 Query 24949 CAGCAACGTTTAATATATGCGGGCAAACAACTGGAAGATTCCATGACTATGAACGATTAC 25008 ||||| ||| | || | || || ||||| || |||||| | || || ||||||| Sbjct 11636 CAGCAGCGTCTCATCTTCGCCGGAAAACAGCTCGAAGATGGCCGTACCTTGGCCGATTAC 11695 Query 25009 AGCATACAGAAAGAGGCCACGCTTCA 25034 | ||| ||||| || |||| || || Sbjct 11696 AACATCCAGAAGGAATCCACCCTCCA 11721 >seq6889 Length=136205 Score = 84.2 bits (92), Expect = 2e-11 Identities = 158/231 (68%), Gaps = 6/231 (3%) Strand=Plus/Plus Query 24832 ATGCAGATATTTGTTAAAACCTTAACCGGCAAAACGATAACCGTCGATGTCGAATCGAG- 24890 |||||||| || || ||||||||||||||||| || || ||| |||| ||||| ||| Sbjct 105741 ATGCAGATCTTCGTCAAAACCTTAACCGGCAAGACCATCACCCTCGAAGTCGA---GAGC 105797 Query 24891 --CGACAGTGTAGAAACTGTTAAGGAAAAAATTGCTGCAAAAGAAGGCGTACCGGTTGAC 24948 ||||| | || | ||| ||| |||||| | || |||||| | || ||| Sbjct 105798 TCCGACACCATCGATAATGTGAAGTCTAAAATTCAAGACAAGGAAGGCATCCCACCAGAC 105857 Query 24949 CAGCAACGTTTAATATATGCGGGCAAACAACTGGAAGATTCCATGACTATGAACGATTAC 25008 ||||| ||| | || | || || ||||| || || || | || || ||||||| Sbjct 105858 CAGCAGCGTCTCATCTTCGCCGGAAAACAGCTCGAGGACGGCCGTACCTTGGCCGATTAC 105917 Query 25009 AGCATACAGAAAGAGGCCACGCTTCATTTAGTGTTACGATTGCGCGGAGGT 25059 | ||| ||||| || |||| || || | || ||||| | || || ||| Sbjct 105918 AACATCCAGAAGGAATCCACCCTCCACCTTGTCTTACGTCTTCGTGGGGGT 105968 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 418152327021920