Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Gossypium_20barbadense_20[genbank_20GCA_5F001856525.1_202016-11-03] 29,751 sequences; 2,566,742,836 total letters Query= NC_003225.3 Length=309286 Score E Sequences producing significant alignments: (Bits) Value seq23340 95.1 2e-14 seq12755 95.1 2e-14 >seq23340 Length=555426 Score = 95.1 bits (104), Expect = 2e-14 Identities = 100/132 (76%), Gaps = 0/132 (0%) Strand=Plus/Minus Query 94182 TGCGATAGAAGCCAAATTGCACACTGCAGTTTCCTCCGAATCACTGTACTGGACAATTTC 94241 ||| ||||| |||| ||||||||| || |||||| | | |||||| | || || Sbjct 730 TGCAATAGATGCCAGATTGCACACAGCTGTTTCCATTGGACTTGTGTACTCAATTATCTC 671 Query 94242 AGTGCACAAATTTGAAGACTTGATGATGCCGACATTTTCTTGGTTAGACTTTCTATTGAT 94301 ||| |||||||||||||| || ||| |||| | ||||| |||||| ||||||||| Sbjct 670 AGTACACAAATTTGAAGATTTAATGGTGCCAAGATTTTGCTGGTTACTTTTTCTATTGCA 611 Query 94302 GGTATCCTTAAA 94313 |||||||| ||| Sbjct 610 GGTATCCTGAAA 599 >seq12755 Length=243795 Score = 95.1 bits (104), Expect = 2e-14 Identities = 100/132 (76%), Gaps = 0/132 (0%) Strand=Plus/Minus Query 94182 TGCGATAGAAGCCAAATTGCACACTGCAGTTTCCTCCGAATCACTGTACTGGACAATTTC 94241 ||| ||||| |||| ||||||||| || |||||| | | |||||| | || || Sbjct 41109 TGCAATAGATGCCAGATTGCACACAGCTGTTTCCATTGGACTTGTGTACTCAATTATCTC 41050 Query 94242 AGTGCACAAATTTGAAGACTTGATGATGCCGACATTTTCTTGGTTAGACTTTCTATTGAT 94301 ||| |||||||||||||| || ||| |||| | ||||| |||||| ||||||||| Sbjct 41049 AGTACACAAATTTGAAGATTTAATGGTGCCAAGATTTTGCTGGTTACTTTTTCTATTGCA 40990 Query 94302 GGTATCCTTAAA 94313 |||||||| ||| Sbjct 40989 GGTATCCTGAAA 40978 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 989206785732205