Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Gossypium_20barbadense_20[genbank_20GCA_5F001856525.1_202016-11-03] 29,751 sequences; 2,566,742,836 total letters Query= NC_003310.1 Length=196858 Score E Sequences producing significant alignments: (Bits) Value seq29212 181 1e-40 seq22586 176 6e-39 seq28581 116 5e-21 seq25332 105 8e-18 seq19704 100 4e-16 seq8664 91.5 2e-13 >seq29212 Length=358297 Score = 181 bits (200), Expect = 1e-40 Identities = 392/584 (67%), Gaps = 2/584 (0%) Strand=Plus/Minus Query 33574 ACATCAAACATGCGAAATCGCAGTGCAGACCCTCGTCTCTACTAATTAATTCGTTAGAAA 33633 ||| ||| || || || ||||| || ||||| || |||| | || || ||||| || | Sbjct 223231 ACAGCAAGCAAGCAAAGTCGCAATGGAGACCTTCATCTCGAGAGATCAACTCGTTTGAGA 223172 Query 33634 ACGTGAGTCCGGGCATTAGGCCACGCTTTTTAAGCCAAAATATGGAAGCGAATGATCCGG 33693 | || | ||| ||||||| || |||||||| | ||||||||| | | ||| |||| Sbjct 223171 AAGTTAATCCAGGCATTAACCCGCGCTTTTTTAACCAAAATATCGCACAGAAACTGCCGG 223112 Query 33694 AAAAGAAGATTCCTTCTACTGCAGCAAAGGCAATAAGTCTCTCTCCATAACCGGCGCTGT 33753 | || || || |||||||| ||| || || || | | || || || | ||| | Sbjct 223111 AGAAAAATATGCCTTCTACGCAAGCGAAAGCGATTAACCGTTCGGCAAAAGCTTCGCCGC 223052 Query 33754 CATGTATCCACTTTTGAGCCCAATCGGCCTTCTTTTTTACACAAGGCATCGTTTCTATGG 33813 | | ||||| || |||||||||||| || || || || |||| |||||| | | Sbjct 223051 CGTCGATCCATTTCAAAGCCCAATCGGCTTTTTTAGCCACGCACGGCACCGTTTCAGTAG 222992 Query 33814 CATTAAAGAGATAGtttttttCATTACTATCTTTAACATAAGTATCGATCAAAAGACTAT 33873 | | ||||| ||||||||| | |||||||| |||||| |||| | ||||||| Sbjct 222991 CGTGGAAGAGGCGGTTTTTTTCGGTGGAATCTTTAATATAAGTTTCGAGGAGGAGACTAT 222932 Query 33874 ACATTTCCGAATGAATGTTTTCAATGGCCATCTGAAATCCGTAGAAACATCTAGCCTCGG 33933 |||| || || || || || || ||||| || || ||||| || || | ||||| | Sbjct 222931 ACATCTCAGAGTGGATATTCTCGATGGCGATTTGGAATCCATAAAATGCACGCGCCTCCG 222872 Query 33934 TAATCTGCACTTCTGTACAAAATCGTTCTGCTAAATTTTCATTCACTATTCCATCACTGG 33993 || || || ||| | || || | || | |||||| || || ||||| | Sbjct 222871 CGATTTGGACCTCTTTCATGAAGCGAACAGCGAGATTTTCTAGAACGATGCCATCGGATG 222812 Query 33994 CTGCAAAAAACGCCAATACATGTTTTATAAAATATTTTTCGTCTGGTGTT-AGTTTATTC 34052 | || || || || | ||||| | || || | |||||| || ||| || || | | Sbjct 222811 CGGCGAAGAAGGCAAGGACATGACTGATGAAGTGGCGTTCGTC-GGCGTTAAGATTTTGC 222753 Query 34053 CAATCATTGATATCTTTAGATATATCCACTTCTTCCACTGTCCAAAATGATGCCTCTGCC 34112 || | | ||| ||| | ||| ||||| || | |||||||| || || || || Sbjct 222752 CAGTGTGGAAGATCGGAAGAGAGATCAACTTCCTCGGCAGTCCAAAAAGAGGCTTCGGCT 222693 Query 34113 TTTTTATACATATTCCAGATGTCATGATATTGGATTGGGAAAAT 34156 || |||||||| | ||| || | | |||||||||||||| || Sbjct 222692 TTCTTATACATTTCCCATATCTGTGGGTATTGGATTGGGAACAT 222649 >seq22586 Length=877411 Score = 176 bits (194), Expect = 6e-39 Identities = 565/871 (65%), Gaps = 8/871 (1%) Strand=Plus/Plus Query 33291 TTTTGGTATTCACCCACACGTTTTTCGAAAAAATTAGTTTTTCCTTCCAATGATATATTT 33350 ||||| || || || || | ||| ||||| ||||| ||||| |||| ||| ||||| | Sbjct 443527 TTTTGATACTCTCCAACTCTTTTCTCGAAGAAATTGGTTTTCCCTTGCAACGATATCAGT 443586 Query 33351 TCCATGAAATCAAACGGATTGGTAACATTGTAAAtttttttAAATCCCAATTCAGAAATC 33410 ||||| ||||||| || ||| || ||||| || ||| | || || | | | Sbjct 443587 TCCATCCAATCAAATGGGTTGACCACGTTGTACATCTTTCCGTACCCTAACGCTCCCAAC 443646 Query 33411 AATCTATCTGCGACGAATTCTATATATGTTTTCATCATTTCACAATTCATTCCTATGAGT 33470 || | ||| || ||||| || || || |||| | || | ||||| || | | Sbjct 443647 AACCGATCCGCTACGAACTCGATGTACTGACTCATTAACTCGCCGTTCATCCCAACCAAC 443706 Query 33471 TTAACTGGAAGAGC--CACAGTAAGAAATTCTTGTTCAATGGATACCGCATTTGTTATAA 33528 || ||||| | || || ||| | | | | | ||| ||||| | ||| | Sbjct 443707 GCGCAGGGCAGAGCATCGCA-TACGAACTCCCTCT-CTATGTCCACCGCGTCCCTTACTA 443764 Query 33529 TAAATCTAACGGTTTCTTCACTCGG--TGGATGTAATAAATGTTTAAACATCAAACATGC 33586 | ||| ||| |||||||||| | | || | | | || || ||| || || Sbjct 443765 TCCCTCTCACGCGTTCTTCACTCAGCTTTGACCGGAGGAGAGAGTA--CAGCAAGCAAGC 443822 Query 33587 GAAATCGCAGTGCAGACCCTCGTCTCTACTAATTAATTCGTTAGAAAACGTGAGTCCGGG 33646 |||||| ||||| ||||| || |||| ||||| ||||| || || || | |||||| Sbjct 443823 GAAATCACAGTGGAGACCTTCATCTCGTGAGATTAACTCGTTTGAGAAAGTTAATCCGGG 443882 Query 33647 CATTAGGCCACGCTTTTTAAGCCAAAATATGGAAGCGAATGATCCGGAAAAGAAGATTCC 33706 ||||| || | |||||| | ||||||||||| | ||| |||||| || ||||| || Sbjct 443883 CATTAACCCCCTCTTTTTTAACCAAAATATGGCACAGAAACTTCCGGAGAAAAAGATCCC 443942 Query 33707 TTCTACTGCAGCAAAGGCAATAAGTCTCTCTCCATAACCGGCGCTGTCATGTATCCACTT 33766 ||||| |||||| || || | | || | || | | | | | ||||| || Sbjct 443943 CTCTACGCAAGCAAAAGCGATTAACCGTTCGGCGAAAGTTTCTCCGCCGTCGATCCATTT 444002 Query 33767 TTGAGCCCAATCGGCCTTCTTTTTTACACAAGGCATCGTTTCTATGGCATTAAAGAGATA 33826 |||||| ||||| || || ||||| |||| ||| || ||||| || ||| Sbjct 444003 CATAGCCCACTCGGCTTTTTTAGCCACACACGGCACCGTCTCGATGGCGCGGAAAAGACG 444062 Query 33827 GtttttttCATTACTATCTTTAACATAAGTATCGATCAAAAGACTATACATTTCCGAATG 33886 ||| ||||||| |||||| | ||||| |||| | ||||| ||||| || || || Sbjct 444063 GTTCTTTTCATCGGAATCTTTTATGTAAGTCTCGAGAAGGAGACTGTACATCTCGGAGTG 444122 Query 33887 AATGTTTTCAATGGCCATCTGAAATCCGTAGAAACATCTAGCCTCGGTAATCTGCACTTC 33946 || ||||| || || || || || || || ||| | ||||||| ||||| || || Sbjct 444123 GATATTTTCGATAGCGATTTGGAAACCATAAAAAGCACGCGCCTCGGAGATCTGGACCTC 444182 Query 33947 TGTACAAAATCGTTCTGCTAAATTTTCATTCACTATTCCATCACTGGCTGCAAAAAACGC 34006 | | || || | || | || ||| ||||| ||||| ||| || ||||| || Sbjct 444183 TTTCATGAACCGAACAGCAAGGTTCTCAAGGACTATGCCATCGGAGGCGGCGAAAAAGGC 444242 Query 34007 CAATACATGTTTTATAAAATATTTTTCGTCTGGTGTTAGTTTATTCCAATCATTGATATC 34066 | || || | || || | | || || | || || | | ||| | | | ||| Sbjct 444243 GAGAACGTGACTAATGAAGTGATGCTCATCGGCGGTGAGAGTTTCCCAGTGACGAAGATC 444302 Query 34067 TTTAGATATATCCACTTCTTCCACTGTCCAAAATGATGCCTCTGCCTTTTTATACATATT 34126 ||| | ||| ||||| || | |||||||| || || || || || || ||||| | Sbjct 444303 GGAAGACAGATCGACTTCCTCTGCGGTCCAAAACGACGCTTCGGCTTTCTTGTACATTTC 444362 Query 34127 CCAGATGTCATGATATTGGATTGGGAAAATA 34157 ||| | || | |||||||| || || ||| Sbjct 444363 CCATACTTCTGGGTATTGGATCGGAAACATA 444393 Score = 176 bits (194), Expect = 6e-39 Identities = 565/871 (65%), Gaps = 8/871 (1%) Strand=Plus/Plus Query 33291 TTTTGGTATTCACCCACACGTTTTTCGAAAAAATTAGTTTTTCCTTCCAATGATATATTT 33350 ||||| || || || || | ||| ||||| ||||| ||||| |||| ||| ||||| | Sbjct 446662 TTTTGATACTCTCCAACTCTTTTCTCGAAGAAATTGGTTTTCCCTTGCAACGATATCAGT 446721 Query 33351 TCCATGAAATCAAACGGATTGGTAACATTGTAAAtttttttAAATCCCAATTCAGAAATC 33410 ||||| ||||||| || ||| || ||||| || ||| | || || | | | Sbjct 446722 TCCATCCAATCAAATGGGTTGACCACGTTGTACATCTTTCCGTACCCTAACGCTCCCAAC 446781 Query 33411 AATCTATCTGCGACGAATTCTATATATGTTTTCATCATTTCACAATTCATTCCTATGAGT 33470 || | ||| || ||||| || || || |||| | || | ||||| || | | Sbjct 446782 AACCGATCCGCTACGAACTCGATGTACTGACTCATTAACTCGCCGTTCATCCCAACCAAC 446841 Query 33471 TTAACTGGAAGAGC--CACAGTAAGAAATTCTTGTTCAATGGATACCGCATTTGTTATAA 33528 || ||||| | || || ||| | | | | | ||| ||||| | ||| | Sbjct 446842 GCGCAGGGCAGAGCATCGCA-TACGAACTCCCTCT-CTATGTCCACCGCGTCCCTTACTA 446899 Query 33529 TAAATCTAACGGTTTCTTCACTCGG--TGGATGTAATAAATGTTTAAACATCAAACATGC 33586 | ||| ||| |||||||||| | | || | | | || || ||| || || Sbjct 446900 TCCCTCTCACGCGTTCTTCACTCAGCTTTGACCGGAGGAGAGAGTA--CAGCAAGCAAGC 446957 Query 33587 GAAATCGCAGTGCAGACCCTCGTCTCTACTAATTAATTCGTTAGAAAACGTGAGTCCGGG 33646 |||||| ||||| ||||| || |||| ||||| ||||| || || || | |||||| Sbjct 446958 GAAATCACAGTGGAGACCTTCATCTCGTGAGATTAACTCGTTTGAGAAAGTTAATCCGGG 447017 Query 33647 CATTAGGCCACGCTTTTTAAGCCAAAATATGGAAGCGAATGATCCGGAAAAGAAGATTCC 33706 ||||| || | |||||| | ||||||||||| | ||| |||||| || ||||| || Sbjct 447018 CATTAACCCCCTCTTTTTTAACCAAAATATGGCACAGAAACTTCCGGAGAAAAAGATCCC 447077 Query 33707 TTCTACTGCAGCAAAGGCAATAAGTCTCTCTCCATAACCGGCGCTGTCATGTATCCACTT 33766 ||||| |||||| || || | | || | || | | | | | ||||| || Sbjct 447078 CTCTACGCAAGCAAAAGCGATTAACCGTTCGGCGAAAGTTTCTCCGCCGTCGATCCATTT 447137 Query 33767 TTGAGCCCAATCGGCCTTCTTTTTTACACAAGGCATCGTTTCTATGGCATTAAAGAGATA 33826 |||||| ||||| || || ||||| |||| ||| || ||||| || ||| Sbjct 447138 CATAGCCCACTCGGCTTTTTTAGCCACACACGGCACCGTCTCGATGGCGCGGAAAAGACG 447197 Query 33827 GtttttttCATTACTATCTTTAACATAAGTATCGATCAAAAGACTATACATTTCCGAATG 33886 ||| ||||||| |||||| | ||||| |||| | ||||| ||||| || || || Sbjct 447198 GTTCTTTTCATCGGAATCTTTTATGTAAGTCTCGAGAAGGAGACTGTACATCTCGGAGTG 447257 Query 33887 AATGTTTTCAATGGCCATCTGAAATCCGTAGAAACATCTAGCCTCGGTAATCTGCACTTC 33946 || ||||| || || || || || || || ||| | ||||||| ||||| || || Sbjct 447258 GATATTTTCGATAGCGATTTGGAAACCATAAAAAGCACGCGCCTCGGAGATCTGGACCTC 447317 Query 33947 TGTACAAAATCGTTCTGCTAAATTTTCATTCACTATTCCATCACTGGCTGCAAAAAACGC 34006 | | || || | || | || ||| ||||| ||||| ||| || ||||| || Sbjct 447318 TTTCATGAACCGAACAGCAAGGTTCTCAAGGACTATGCCATCGGAGGCGGCGAAAAAGGC 447377 Query 34007 CAATACATGTTTTATAAAATATTTTTCGTCTGGTGTTAGTTTATTCCAATCATTGATATC 34066 | || || | || || | | || || | || || | | ||| | | | ||| Sbjct 447378 GAGAACGTGACTAATGAAGTGATGCTCATCGGCGGTGAGAGTTTCCCAGTGACGAAGATC 447437 Query 34067 TTTAGATATATCCACTTCTTCCACTGTCCAAAATGATGCCTCTGCCTTTTTATACATATT 34126 ||| | ||| ||||| || | |||||||| || || || || || || ||||| | Sbjct 447438 GGAAGACAGATCGACTTCCTCTGCGGTCCAAAACGACGCTTCGGCTTTCTTGTACATTTC 447497 Query 34127 CCAGATGTCATGATATTGGATTGGGAAAATA 34157 ||| | || | |||||||| || || ||| Sbjct 447498 CCATACTTCTGGGTATTGGATCGGAAACATA 447528 >seq28581 Length=397638 Score = 116 bits (128), Expect = 5e-21 Identities = 373/575 (65%), Gaps = 8/575 (1%) Strand=Plus/Plus Query 33291 TTTTGGTATTCACCCACACGTTTTTCGAAAAAATTAGTTTTTCCTTCCAATGATATATTT 33350 || || || || || || | || ||||| ||||| ||||| |||| |||||| || | Sbjct 33792 TTCTGATACTCTCCAACTCTCTTCTCGAAGAAATTGGTTTTCCCTTGCAATGAAATTAGT 33851 Query 33351 TCCATGAAATCAAACGGATTGGTAACATTGTAAAtttttttAAATCCCAATTCAGAAATC 33410 ||||| ||||||| || || | ||||||| ||||| | | || || | | | Sbjct 33852 TCCATCCAATCAAAAGGGTTAGCCGCATTGTACATTTTGCCATACCCTAAAGCTCCTAAC 33911 Query 33411 AATCTATCTGCGACGAATTCTATATATGTTTTCATCATTTCACAATTCATTCCTATGA-- 33468 || | ||| || ||||| || || ||| |||||| |||| |||||| || | | Sbjct 33912 AACCGATCCGCAACGAACTCAATGTATTGACTCATCAACTCACCATTCATCCCAACTAAC 33971 Query 33469 GTTTAACTGGAAGAGCCACAGTAAGAAATTCTTGTTCAATGGATACCGCATTTGTTATAA 33528 | || |||||||| | | ||| || || || | ||||||| | | | Sbjct 33972 GCGCAA--GGAAGAGCGTCGCATACAAACTCCCTCTCTATATACACCGCATCACTCACTA 34029 Query 33529 TAAATCTAACGGTTTCTTCACTCGG--TGGATGTAATAAATGTTTAAACATCAAACATGC 33586 | | ||| |||||||| | | || || | | || || ||| || || Sbjct 34030 TTCCCTTCACGCGCTCTTCACTTAGCTTTGACTGAAGGAGAGAGTA--CAGCAAGCAAGC 34087 Query 33587 GAAATCGCAGTGCAGACCCTCGTCTCTACTAATTAATTCGTTAGAAAACGTGAGTCCGGG 33646 || ||||| || ||||| || |||| | || || ||||| || || || | ||| || Sbjct 34088 AAAGTCGCAATGGAGACCTTCATCTCGAGAGATCAACTCGTTTGAGAAAGTTAATCCAGG 34147 Query 33647 CATTAGGCCACGCTTTTTAAGCCAAAATATGGAAGCGAATGATCCGGAAAAGAAGATTCC 33706 ||||| || |||||||| | ||||||||| | ||| ||||| || || || || Sbjct 34148 CATTAACCCGCGCTTTTTTAACCAAAATATCGCGCAGAAACTGCCGGAGAAAAATATGCC 34207 Query 33707 TTCTACTGCAGCAAAGGCAATAAGTCTCTCTCCATAACCGGCGCTGTCATGTATCCACTT 33766 |||||| ||| || || || | | || || || | ||| | | | ||||| || Sbjct 34208 TTCTACGCAAGCGAAAGCGATTAACCGTTCGGCAAAAGCTTCGCGGCCGTCGATCCATTT 34267 Query 33767 TTGAGCCCAATCGGCCTTCTTTTTTACACAAGGCATCGTTTCTATGGCATTAAAGAGATA 33826 |||||||||||| || || || || |||| |||||| | || | ||||| Sbjct 34268 GAAAGCCCAATCGGCTTTTTTAGCCACGCACGGCACCGTTTCAGTAGCGTGGAAGAGGCG 34327 Query 33827 GtttttttCATTACTATCTTTAACATAAGTATCGA 33861 ||||||||| | |||||| | |||||| |||| Sbjct 34328 GTTTTTTTCGGTGGAATCTTTGATATAAGTTTCGA 34362 >seq25332 Length=434290 Score = 105 bits (116), Expect = 8e-18 Identities = 160/228 (70%), Gaps = 0/228 (0%) Strand=Plus/Plus Query 63662 AGTTCCCGCATTAAATAAGGTAGGAGAAGCGTGCGTAAACCATTTTTCAGAAAGTAGATT 63721 |||||| ||||| || | || |||||||| || ||||||||| ||| ||| | | | Sbjct 185741 AGTTCCAGCATTGAAAAGTGTGGGAGAAGCATGAGTAAACCATCTTTGAGACATCATGTG 185800 Query 63722 GTACGTCTCAATAGCTGAGTCTATATCCCATTGATGAATTCCTACTGCGACACGCATTAA 63781 || || | ||||| || || || || | ||||||||| ||||| || | |||||| Sbjct 185801 ATAAGTTTTTATAGCAGAATCAATGTCATTCTTATGAATTCCAACTGCAACCCTCATTAA 185860 Query 63782 CATGTGCTGAGGTCTTTCAACAATTTTGTTGTTTATTTTCAACAAGTAGGATTTTTCCAA 63841 |||||| || || ||||| | || || | | |||||| | |||||| | || | Sbjct 185861 CATGTGTTGGGGCCTTTCTATAACCTTCCCTTGAACTTTCAAGAGGTAGGACCTCTCAAG 185920 Query 63842 AGTTTTAAAACCAAAATAGTTGTATGAAAAGTCTCGTTCGTAAATAAT 63889 ||||| ||||||||||| | || |||||| || || || || || Sbjct 185921 GGTTTTGAAACCAAAATAATCATAGTCAAAGTCCCGATCATATATGAT 185968 >seq19704 Length=164701 Score = 100 bits (110), Expect = 4e-16 Identities = 159/228 (70%), Gaps = 0/228 (0%) Strand=Plus/Minus Query 63662 AGTTCCCGCATTAAATAAGGTAGGAGAAGCGTGCGTAAACCATTTTTCAGAAAGTAGATT 63721 |||||| ||||| || | || |||||||| || ||||||||| ||| ||| | | | Sbjct 135482 AGTTCCAGCATTGAAAAGTGTGGGAGAAGCATGAGTAAACCATCTTTGAGACATCATGTG 135423 Query 63722 GTACGTCTCAATAGCTGAGTCTATATCCCATTGATGAATTCCTACTGCGACACGCATTAA 63781 || || | ||||| || || || || | ||||||||| ||||| || | |||||| Sbjct 135422 ATAAGTTTTTATAGCAGAATCAATGTCATTCTTATGAATTCCAACTGCAACCCTCATTAA 135363 Query 63782 CATGTGCTGAGGTCTTTCAACAATTTTGTTGTTTATTTTCAACAAGTAGGATTTTTCCAA 63841 |||||| || || ||||| | || || | | ||| || | |||||| | || | Sbjct 135362 CATGTGTTGGGGCCTTTCTATAACCTTCCCTTGAACTTTTAAGAGGTAGGACCTCTCAAG 135303 Query 63842 AGTTTTAAAACCAAAATAGTTGTATGAAAAGTCTCGTTCGTAAATAAT 63889 ||||| ||||||||||| | || |||||| || || || || || Sbjct 135302 GGTTTTGAAACCAAAATAATCATAGTCAAAGTCCCGATCATATATGAT 135255 >seq8664 Length=49552 Score = 91.5 bits (100), Expect = 2e-13 Identities = 157/228 (69%), Gaps = 0/228 (0%) Strand=Plus/Minus Query 63662 AGTTCCCGCATTAAATAAGGTAGGAGAAGCGTGCGTAAACCATTTTTCAGAAAGTAGATT 63721 ||| || ||||| || | || |||||||| || || |||||| ||| ||| | | | Sbjct 49323 AGTCCCAGCATTGAAAAGAGTGGGAGAAGCATGAGTGAACCATCTTTGAGACATCATGTG 49264 Query 63722 GTACGTCTCAATAGCTGAGTCTATATCCCATTGATGAATTCCTACTGCGACACGCATTAA 63781 || || | ||||| || || || || | ||||||||| || || || | |||||| Sbjct 49263 ATAAGTTTTTATAGCAGAATCAATGTCATCCTTATGAATTCCAACAGCAACCCTCATTAA 49204 Query 63782 CATGTGCTGAGGTCTTTCAACAATTTTGTTGTTTATTTTCAACAAGTAGGATTTTTCCAA 63841 |||||||||||| ||||| | || || | | |||||| | || || | |||| Sbjct 49203 CATGTGCTGAGGCCTTTCTATAACCTTCCCTTGAACTTTCAAGAGATAAGACCTCTCCAG 49144 Query 63842 AGTTTTAAAACCAAAATAGTTGTATGAAAAGTCTCGTTCGTAAATAAT 63889 ||||| || ||||| || | ||| |||||| || || || || || Sbjct 49143 GGTTTTGAAGCCAAAGTAATCGTAGTCAAAGTCACGATCATATATGAT 49096 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 629583378707280