Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Gossypium_20barbadense_20[genbank_20GCA_5F001856525.1_202016-11-03]
29,751 sequences; 2,566,742,836 total letters
Query= NC_004002.1
Length=149955
Score E
Sequences producing significant alignments: (Bits) Value
seq22586 122 8e-23
seq29212 116 4e-21
seq28581 105 6e-18
>seq22586
Length=877411
Score = 122 bits (134), Expect = 8e-23
Identities = 367/562 (65%), Gaps = 5/562 (1%)
Strand=Plus/Plus
Query 13869 AAACACGCAAAATCACAATGAAGGCCCTCATCTCTACTAATAAGTTCGTTTGAAAATGTT 13928
|| || || |||||||| || || || ||||||| || | |||||||| || |||
Sbjct 443815 AAGCAAGCGAAATCACAGTGGAGACCTTCATCTCGTGAGATTAACTCGTTTGAGAAAGTT 443874
Query 13929 AATCCTGGCATCAATCCTCGtttttttAACCAAAATATTGCAGCAAATGACCCGGAAAAG 13988
||||| ||||| || || | ||||||||||||||||| ||| || ||||| ||
Sbjct 443875 AATCCGGGCATTAACCCCCTCTTTTTTAACCAAAATATGGCACAGAAACTTCCGGAGAAA 443934
Query 13989 AATATTCCCTCAACTGCAGCAAACGCTATTAATCGTTCTCCAAACGATGCTTTTTTGTTC 14048
|| || ||||| || |||||| || ||||| ||||| | || | | || | ||
Sbjct 443935 AAGATCCCCTCTACGCAAGCAAAAGCGATTAACCGTTCGGCGAAAGTTTCTCCGCCG-TC 443993
Query 14049 GATATCCATTTTCTAGCCCATTCAGAtttttttttAATAAAATCCATTGTTTCAATAGCA 14108
| |||||||| ||||||| || | |||||| | | | || || || || ||
Sbjct 443994 G--ATCCATTTCATAGCCCACTCGGCTTTTTTAGCCACACACGGCACCGTCTCGATGGCG 444051
Query 14109 TTAAATAAATATTCCTTCTCTTTAGTACTTGAAATGTATGTATCAATAAGTAAGCTATAC 14168
|| | | | ||| || | | | | ||||| || || | ||| | || |||
Sbjct 444052 CGGAAAAGACGGTTCTTTTCATCGGAATCTTTTATGTAAGTCTCGAGAAGGAGACTGTAC 444111
Query 14169 ATTTCAGAGTGTATGTTTTCCATAGCTATCTGAAAACCAT-AAAAGCATCTAGCTTCCGA 14227
|| || ||||| || ||||| ||||| || || ||||||| ||||||| | || || ||
Sbjct 444112 ATCTCGGAGTGGATATTTTCGATAGCGATTTGGAAACCATAAAAAGCA-CGCGCCTCGGA 444170
Query 14228 CCATTGTACTTCCGAGTAAAATCTTTCGGCCAAATTTTCATTAACTATACCATCACTAGC 14287
|| || || || | | || | || ||| ||||| ||||| ||
Sbjct 444171 GATCTGGACCTCTTTCATGAACCGAACAGCAAGGTTCTCAAGGACTATGCCATCGGAGGC 444230
Query 14288 TGCAAAAAATGCCAATATGTTTTTAATAAAGTATTGCTCTTCATTGTTGAGTTTTTTCCA 14347
|| ||||| || | | || |||| |||| ||||| || | |||| ||| |||
Sbjct 444231 GGCGAAAAAGGCGAGAACGTGACTAATGAAGTGATGCTCATCGGCGGTGAGAGTTTCCCA 444290
Query 14348 ATCGGATAAATCCTTAGAAAGATCTACTTCATCAACTGTCCAAAAACTAGCGACAGCTTT 14407
| | ||| ||| ||||| ||||| || | |||||||| || | |||||
Sbjct 444291 GTGACGAAGATCGGAAGACAGATCGACTTCCTCTGCGGTCCAAAACGACGCTTCGGCTTT 444350
Query 14408 TTTATACATTACCCATATTTCT 14429
|| |||||| |||||| ||||
Sbjct 444351 CTTGTACATTTCCCATACTTCT 444372
Score = 122 bits (134), Expect = 8e-23
Identities = 367/562 (65%), Gaps = 5/562 (1%)
Strand=Plus/Plus
Query 13869 AAACACGCAAAATCACAATGAAGGCCCTCATCTCTACTAATAAGTTCGTTTGAAAATGTT 13928
|| || || |||||||| || || || ||||||| || | |||||||| || |||
Sbjct 446950 AAGCAAGCGAAATCACAGTGGAGACCTTCATCTCGTGAGATTAACTCGTTTGAGAAAGTT 447009
Query 13929 AATCCTGGCATCAATCCTCGtttttttAACCAAAATATTGCAGCAAATGACCCGGAAAAG 13988
||||| ||||| || || | ||||||||||||||||| ||| || ||||| ||
Sbjct 447010 AATCCGGGCATTAACCCCCTCTTTTTTAACCAAAATATGGCACAGAAACTTCCGGAGAAA 447069
Query 13989 AATATTCCCTCAACTGCAGCAAACGCTATTAATCGTTCTCCAAACGATGCTTTTTTGTTC 14048
|| || ||||| || |||||| || ||||| ||||| | || | | || | ||
Sbjct 447070 AAGATCCCCTCTACGCAAGCAAAAGCGATTAACCGTTCGGCGAAAGTTTCTCCGCCG-TC 447128
Query 14049 GATATCCATTTTCTAGCCCATTCAGAtttttttttAATAAAATCCATTGTTTCAATAGCA 14108
| |||||||| ||||||| || | |||||| | | | || || || || ||
Sbjct 447129 G--ATCCATTTCATAGCCCACTCGGCTTTTTTAGCCACACACGGCACCGTCTCGATGGCG 447186
Query 14109 TTAAATAAATATTCCTTCTCTTTAGTACTTGAAATGTATGTATCAATAAGTAAGCTATAC 14168
|| | | | ||| || | | | | ||||| || || | ||| | || |||
Sbjct 447187 CGGAAAAGACGGTTCTTTTCATCGGAATCTTTTATGTAAGTCTCGAGAAGGAGACTGTAC 447246
Query 14169 ATTTCAGAGTGTATGTTTTCCATAGCTATCTGAAAACCAT-AAAAGCATCTAGCTTCCGA 14227
|| || ||||| || ||||| ||||| || || ||||||| ||||||| | || || ||
Sbjct 447247 ATCTCGGAGTGGATATTTTCGATAGCGATTTGGAAACCATAAAAAGCA-CGCGCCTCGGA 447305
Query 14228 CCATTGTACTTCCGAGTAAAATCTTTCGGCCAAATTTTCATTAACTATACCATCACTAGC 14287
|| || || || | | || | || ||| ||||| ||||| ||
Sbjct 447306 GATCTGGACCTCTTTCATGAACCGAACAGCAAGGTTCTCAAGGACTATGCCATCGGAGGC 447365
Query 14288 TGCAAAAAATGCCAATATGTTTTTAATAAAGTATTGCTCTTCATTGTTGAGTTTTTTCCA 14347
|| ||||| || | | || |||| |||| ||||| || | |||| ||| |||
Sbjct 447366 GGCGAAAAAGGCGAGAACGTGACTAATGAAGTGATGCTCATCGGCGGTGAGAGTTTCCCA 447425
Query 14348 ATCGGATAAATCCTTAGAAAGATCTACTTCATCAACTGTCCAAAAACTAGCGACAGCTTT 14407
| | ||| ||| ||||| ||||| || | |||||||| || | |||||
Sbjct 447426 GTGACGAAGATCGGAAGACAGATCGACTTCCTCTGCGGTCCAAAACGACGCTTCGGCTTT 447485
Query 14408 TTTATACATTACCCATATTTCT 14429
|| |||||| |||||| ||||
Sbjct 447486 CTTGTACATTTCCCATACTTCT 447507
>seq29212
Length=358297
Score = 116 bits (128), Expect = 4e-21
Identities = 366/560 (65%), Gaps = 9/560 (2%)
Strand=Plus/Minus
Query 13869 AAACACGCAAAATCACAATGAAGGCCCTCATCTCTACTAATAAGTTCGTTTGAAAATGTT 13928
|| || ||||| || ||||| || || ||||||| | || | |||||||| || |||
Sbjct 223226 AAGCAAGCAAAGTCGCAATGGAGACCTTCATCTCGAGAGATCAACTCGTTTGAGAAAGTT 223167
Query 13929 AATCCTGGCATCAATCCTCGtttttttAACCAAAATATTG--CAGCAAATGACCCGGAAA 13986
||||| ||||| || || || ||||||||||||||||| | ||| || || ||||| |
Sbjct 223166 AATCCAGGCATTAACCCGCGCTTTTTTAACCAAAATATCGCACAGAAACTG--CCGGAGA 223109
Query 13987 AGAATATTCCCTCAACTGCAGCAAACGCTATTAATCGTTCTCCAAACGATGCTTTTTTGT 14046
| ||||| || || || ||| || || ||||| ||||| |||| | | | |
Sbjct 223108 AAAATATGCCTTCTACGCAAGCGAAAGCGATTAACCGTTCGGCAAAAGCTTCGCCGCCG- 223050
Query 14047 TCGATATCCATTTTCTAGCCCATTCAGAtttttttttAATAAAATCCATTGTTTCAATAG 14106
||| |||||||| |||||| || | |||||| | | || |||||| |||
Sbjct 223049 TCG--ATCCATTTCAAAGCCCAATCGGCTTTTTTAGCCACGCACGGCACCGTTTCAGTAG 222992
Query 14107 CATTAAATAAATATTCCTTCTCTTTAGTACTTGAAATGTATGTATCAATAAGTAAGCTAT 14166
| | || | | || || | | | | ||| || || || | || | ||||
Sbjct 222991 CGTGGAAGAGGCGGTTTTTTTCGGTGGAATCTTTAATATAAGTTTCGAGGAGGAGACTAT 222932
Query 14167 ACATTTCAGAGTGTATGTTTTCCATAGCTATCTGAAAACCATAAAA-GCATCTAGCTTCC 14225
|||| |||||||| || || || || || || || || |||||||| ||| | || |||
Sbjct 222931 ACATCTCAGAGTGGATATTCTCGATGGCGATTTGGAATCCATAAAATGCA-CGCGCCTCC 222873
Query 14226 GACCATTGTACTTCCGAGTAAAATCTTTCGGCCAAATTTTCATTAACTATACCATCACTA 14285
| ||| || || || | | || | |||||| ||| || |||||
Sbjct 222872 GCGATTTGGACCTCTTTCATGAAGCGAACAGCGAGATTTTCTAGAACGATGCCATCGGAT 222813
Query 14286 GCTGCAAAAAATGCCAATATGTTTTTAATAAAGTATTGCTCTTCATTGTTGAGTTTTTTC 14345
|| || || || || | | | | || |||| | || || ||| || |||| |
Sbjct 222812 GCGGCGAAGAAGGCAAGGACATGACTGATGAAGTGGCGTTCGTCGGCGTTAAGATTTTGC 222753
Query 14346 CAATCGGATAAATCCTTAGAAAGATCTACTTCATCAACTGTCCAAAAACTAGCGACAGCT 14405
|| | | | ||| ||| ||||| ||||| || | ||||||||| || | |||
Sbjct 222752 CAGTGTGGAAGATCGGAAGAGAGATCAACTTCCTCGGCAGTCCAAAAAGAGGCTTCGGCT 222693
Query 14406 TTTTTATACATTACCCATAT 14425
|| ||||||||| |||||||
Sbjct 222692 TTCTTATACATTTCCCATAT 222673
>seq28581
Length=397638
Score = 105 bits (116), Expect = 6e-18
Identities = 124/166 (75%), Gaps = 4/166 (2%)
Strand=Plus/Plus
Query 13869 AAACACGCAAAATCACAATGAAGGCCCTCATCTCTACTAATAAGTTCGTTTGAAAATGTT 13928
|| || ||||| || ||||| || || ||||||| | || | |||||||| || |||
Sbjct 34080 AAGCAAGCAAAGTCGCAATGGAGACCTTCATCTCGAGAGATCAACTCGTTTGAGAAAGTT 34139
Query 13929 AATCCTGGCATCAATCCTCGtttttttAACCAAAATAT--TGCAGCAAATGACCCGGAAA 13986
||||| ||||| || || || ||||||||||||||||| |||| || || ||||| |
Sbjct 34140 AATCCAGGCATTAACCCGCGCTTTTTTAACCAAAATATCGCGCAGAAACTG--CCGGAGA 34197
Query 13987 AGAATATTCCCTCAACTGCAGCAAACGCTATTAATCGTTCTCCAAA 14032
| ||||| || || || ||| || || ||||| ||||| ||||
Sbjct 34198 AAAATATGCCTTCTACGCAAGCGAAAGCGATTAACCGTTCGGCAAA 34243
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 479549595153400
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |