Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Gossypium_20barbadense_20[genbank_20GCA_5F001856525.1_202016-11-03] 29,751 sequences; 2,566,742,836 total letters Query= NC_004003.1 Length=149599 Score E Sequences producing significant alignments: (Bits) Value seq22586 143 3e-29 seq29212 102 8e-17 seq28581 98.7 9e-16 >seq22586 Length=877411 Score = 143 bits (158), Expect = 3e-29 Identities = 371/562 (66%), Gaps = 5/562 (1%) Strand=Plus/Plus Query 13657 AAACACGCAAAATCACAATGAAGGCCCTCATCTCTACTAATAAGTTCGTTTGAAAATGTT 13716 || || || |||||||| || || || ||||||| || | |||||||| || ||| Sbjct 443815 AAGCAAGCGAAATCACAGTGGAGACCTTCATCTCGTGAGATTAACTCGTTTGAGAAAGTT 443874 Query 13717 AATCCTGGCATCAATCCTCGtttttttAACCAAAATATTGCAGCGAATGATCCGGAAAAG 13776 ||||| ||||| || || | ||||||||||||||||| ||| ||| |||||| || Sbjct 443875 AATCCGGGCATTAACCCCCTCTTTTTTAACCAAAATATGGCACAGAAACTTCCGGAGAAA 443934 Query 13777 AATATTCCCTCAACTGCAGCAAACGCTATTAGTCGTTCTCCAAACGATGCTTTTTTGTTT 13836 || || ||||| || |||||| || |||| ||||| | || | | || || Sbjct 443935 AAGATCCCCTCTACGCAAGCAAAAGCGATTAACCGTTCGGCGAAAGTTTCTCCGCCGT-- 443992 Query 13837 GATATCCATTTTCTAGCCCATTCAGAtttttttttAATAAAATCCATTGTTTCGATTGCA 13896 |||||||| ||||||| || | |||||| | | | || || ||||| || Sbjct 443993 -CGATCCATTTCATAGCCCACTCGGCTTTTTTAGCCACACACGGCACCGTCTCGATGGCG 444051 Query 13897 TTGAATAAATGTTCCTTCTCTTTAGTACTTGAAATGTATGTATCAATAAGTAAGCTATAC 13956 ||| | | | | ||| || | | | | ||||| || || | ||| | || ||| Sbjct 444052 CGGAAAAGACGGTTCTTTTCATCGGAATCTTTTATGTAAGTCTCGAGAAGGAGACTGTAC 444111 Query 13957 ATTTCAGAGTGTATGTTTTCTATAGCTATCTGAAAACCATAAAAACATCTAGCTTCTGAC 14016 || || ||||| || ||||| ||||| || || |||||||||||| | || || || Sbjct 444112 ATCTCGGAGTGGATATTTTCGATAGCGATTTGGAAACCATAAAAAGCACGCGCCTCGGAG 444171 Query 14017 CATTGTACCTCCGAGTAAAATCTTTCTGCCAAGTTTTCATTAACAATACCATCACTAGCT 14076 || ||||| || | | || | ||| ||| || || ||||| || Sbjct 444172 ATCTGGACCTCTTTCATGAACCGAACAGCAAGGTTCTCAAGGACTATGCCATCGGAGGCG 444231 Query 14077 GCAAAAAATGCCAATATGTTTTTAATAAAGTATTGCTCTTCATTGTTGAGTTTTTTCCAA 14136 || ||||| || | | || |||| |||| ||||| || | |||| ||| ||| Sbjct 444232 GCGAAAAAGGCGAGAACGTGACTAATGAAGTGATGCTCATCGGCGGTGAGAGTTTCCCAG 444291 Query 14137 TCGGCTAA-ATCCTTAGAAAGATCTACTTCATCAACTGTCCAAAAACTAGCGACAGCTTT 14195 | | | || ||| ||| ||||| ||||| || | |||||||| || | ||||| Sbjct 444292 T-GACGAAGATCGGAAGACAGATCGACTTCCTCTGCGGTCCAAAACGACGCTTCGGCTTT 444350 Query 14196 TTTATACATTACCCATATTTCT 14217 || |||||| |||||| |||| Sbjct 444351 CTTGTACATTTCCCATACTTCT 444372 Score = 143 bits (158), Expect = 3e-29 Identities = 371/562 (66%), Gaps = 5/562 (1%) Strand=Plus/Plus Query 13657 AAACACGCAAAATCACAATGAAGGCCCTCATCTCTACTAATAAGTTCGTTTGAAAATGTT 13716 || || || |||||||| || || || ||||||| || | |||||||| || ||| Sbjct 446950 AAGCAAGCGAAATCACAGTGGAGACCTTCATCTCGTGAGATTAACTCGTTTGAGAAAGTT 447009 Query 13717 AATCCTGGCATCAATCCTCGtttttttAACCAAAATATTGCAGCGAATGATCCGGAAAAG 13776 ||||| ||||| || || | ||||||||||||||||| ||| ||| |||||| || Sbjct 447010 AATCCGGGCATTAACCCCCTCTTTTTTAACCAAAATATGGCACAGAAACTTCCGGAGAAA 447069 Query 13777 AATATTCCCTCAACTGCAGCAAACGCTATTAGTCGTTCTCCAAACGATGCTTTTTTGTTT 13836 || || ||||| || |||||| || |||| ||||| | || | | || || Sbjct 447070 AAGATCCCCTCTACGCAAGCAAAAGCGATTAACCGTTCGGCGAAAGTTTCTCCGCCGT-- 447127 Query 13837 GATATCCATTTTCTAGCCCATTCAGAtttttttttAATAAAATCCATTGTTTCGATTGCA 13896 |||||||| ||||||| || | |||||| | | | || || ||||| || Sbjct 447128 -CGATCCATTTCATAGCCCACTCGGCTTTTTTAGCCACACACGGCACCGTCTCGATGGCG 447186 Query 13897 TTGAATAAATGTTCCTTCTCTTTAGTACTTGAAATGTATGTATCAATAAGTAAGCTATAC 13956 ||| | | | | ||| || | | | | ||||| || || | ||| | || ||| Sbjct 447187 CGGAAAAGACGGTTCTTTTCATCGGAATCTTTTATGTAAGTCTCGAGAAGGAGACTGTAC 447246 Query 13957 ATTTCAGAGTGTATGTTTTCTATAGCTATCTGAAAACCATAAAAACATCTAGCTTCTGAC 14016 || || ||||| || ||||| ||||| || || |||||||||||| | || || || Sbjct 447247 ATCTCGGAGTGGATATTTTCGATAGCGATTTGGAAACCATAAAAAGCACGCGCCTCGGAG 447306 Query 14017 CATTGTACCTCCGAGTAAAATCTTTCTGCCAAGTTTTCATTAACAATACCATCACTAGCT 14076 || ||||| || | | || | ||| ||| || || ||||| || Sbjct 447307 ATCTGGACCTCTTTCATGAACCGAACAGCAAGGTTCTCAAGGACTATGCCATCGGAGGCG 447366 Query 14077 GCAAAAAATGCCAATATGTTTTTAATAAAGTATTGCTCTTCATTGTTGAGTTTTTTCCAA 14136 || ||||| || | | || |||| |||| ||||| || | |||| ||| ||| Sbjct 447367 GCGAAAAAGGCGAGAACGTGACTAATGAAGTGATGCTCATCGGCGGTGAGAGTTTCCCAG 447426 Query 14137 TCGGCTAA-ATCCTTAGAAAGATCTACTTCATCAACTGTCCAAAAACTAGCGACAGCTTT 14195 | | | || ||| ||| ||||| ||||| || | |||||||| || | ||||| Sbjct 447427 T-GACGAAGATCGGAAGACAGATCGACTTCCTCTGCGGTCCAAAACGACGCTTCGGCTTT 447485 Query 14196 TTTATACATTACCCATATTTCT 14217 || |||||| |||||| |||| Sbjct 447486 CTTGTACATTTCCCATACTTCT 447507 >seq29212 Length=358297 Score = 102 bits (112), Expect = 8e-17 Identities = 121/164 (74%), Gaps = 0/164 (0%) Strand=Plus/Minus Query 13657 AAACACGCAAAATCACAATGAAGGCCCTCATCTCTACTAATAAGTTCGTTTGAAAATGTT 13716 || || ||||| || ||||| || || ||||||| | || | |||||||| || ||| Sbjct 223226 AAGCAAGCAAAGTCGCAATGGAGACCTTCATCTCGAGAGATCAACTCGTTTGAGAAAGTT 223167 Query 13717 AATCCTGGCATCAATCCTCGtttttttAACCAAAATATTGCAGCGAATGATCCGGAAAAG 13776 ||||| ||||| || || || ||||||||||||||||| ||| ||| ||||| || Sbjct 223166 AATCCAGGCATTAACCCGCGCTTTTTTAACCAAAATATCGCACAGAAACTGCCGGAGAAA 223107 Query 13777 AATATTCCCTCAACTGCAGCAAACGCTATTAGTCGTTCTCCAAA 13820 ||||| || || || ||| || || |||| ||||| |||| Sbjct 223106 AATATGCCTTCTACGCAAGCGAAAGCGATTAACCGTTCGGCAAA 223063 >seq28581 Length=397638 Score = 98.7 bits (108), Expect = 9e-16 Identities = 120/164 (73%), Gaps = 0/164 (0%) Strand=Plus/Plus Query 13657 AAACACGCAAAATCACAATGAAGGCCCTCATCTCTACTAATAAGTTCGTTTGAAAATGTT 13716 || || ||||| || ||||| || || ||||||| | || | |||||||| || ||| Sbjct 34080 AAGCAAGCAAAGTCGCAATGGAGACCTTCATCTCGAGAGATCAACTCGTTTGAGAAAGTT 34139 Query 13717 AATCCTGGCATCAATCCTCGtttttttAACCAAAATATTGCAGCGAATGATCCGGAAAAG 13776 ||||| ||||| || || || ||||||||||||||||| || ||| ||||| || Sbjct 34140 AATCCAGGCATTAACCCGCGCTTTTTTAACCAAAATATCGCGCAGAAACTGCCGGAGAAA 34199 Query 13777 AATATTCCCTCAACTGCAGCAAACGCTATTAGTCGTTCTCCAAA 13820 ||||| || || || ||| || || |||| ||||| |||| Sbjct 34200 AATATGCCTTCTACGCAAGCGAAAGCGATTAACCGTTCGGCAAA 34243 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 478410818807640