Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Gossypium_20barbadense_20[genbank_20GCA_5F001856525.1_202016-11-03]
29,751 sequences; 2,566,742,836 total letters
Query= NC_004003.1
Length=149599
Score E
Sequences producing significant alignments: (Bits) Value
seq22586 143 3e-29
seq29212 102 8e-17
seq28581 98.7 9e-16
>seq22586
Length=877411
Score = 143 bits (158), Expect = 3e-29
Identities = 371/562 (66%), Gaps = 5/562 (1%)
Strand=Plus/Plus
Query 13657 AAACACGCAAAATCACAATGAAGGCCCTCATCTCTACTAATAAGTTCGTTTGAAAATGTT 13716
|| || || |||||||| || || || ||||||| || | |||||||| || |||
Sbjct 443815 AAGCAAGCGAAATCACAGTGGAGACCTTCATCTCGTGAGATTAACTCGTTTGAGAAAGTT 443874
Query 13717 AATCCTGGCATCAATCCTCGtttttttAACCAAAATATTGCAGCGAATGATCCGGAAAAG 13776
||||| ||||| || || | ||||||||||||||||| ||| ||| |||||| ||
Sbjct 443875 AATCCGGGCATTAACCCCCTCTTTTTTAACCAAAATATGGCACAGAAACTTCCGGAGAAA 443934
Query 13777 AATATTCCCTCAACTGCAGCAAACGCTATTAGTCGTTCTCCAAACGATGCTTTTTTGTTT 13836
|| || ||||| || |||||| || |||| ||||| | || | | || ||
Sbjct 443935 AAGATCCCCTCTACGCAAGCAAAAGCGATTAACCGTTCGGCGAAAGTTTCTCCGCCGT-- 443992
Query 13837 GATATCCATTTTCTAGCCCATTCAGAtttttttttAATAAAATCCATTGTTTCGATTGCA 13896
|||||||| ||||||| || | |||||| | | | || || ||||| ||
Sbjct 443993 -CGATCCATTTCATAGCCCACTCGGCTTTTTTAGCCACACACGGCACCGTCTCGATGGCG 444051
Query 13897 TTGAATAAATGTTCCTTCTCTTTAGTACTTGAAATGTATGTATCAATAAGTAAGCTATAC 13956
||| | | | | ||| || | | | | ||||| || || | ||| | || |||
Sbjct 444052 CGGAAAAGACGGTTCTTTTCATCGGAATCTTTTATGTAAGTCTCGAGAAGGAGACTGTAC 444111
Query 13957 ATTTCAGAGTGTATGTTTTCTATAGCTATCTGAAAACCATAAAAACATCTAGCTTCTGAC 14016
|| || ||||| || ||||| ||||| || || |||||||||||| | || || ||
Sbjct 444112 ATCTCGGAGTGGATATTTTCGATAGCGATTTGGAAACCATAAAAAGCACGCGCCTCGGAG 444171
Query 14017 CATTGTACCTCCGAGTAAAATCTTTCTGCCAAGTTTTCATTAACAATACCATCACTAGCT 14076
|| ||||| || | | || | ||| ||| || || ||||| ||
Sbjct 444172 ATCTGGACCTCTTTCATGAACCGAACAGCAAGGTTCTCAAGGACTATGCCATCGGAGGCG 444231
Query 14077 GCAAAAAATGCCAATATGTTTTTAATAAAGTATTGCTCTTCATTGTTGAGTTTTTTCCAA 14136
|| ||||| || | | || |||| |||| ||||| || | |||| ||| |||
Sbjct 444232 GCGAAAAAGGCGAGAACGTGACTAATGAAGTGATGCTCATCGGCGGTGAGAGTTTCCCAG 444291
Query 14137 TCGGCTAA-ATCCTTAGAAAGATCTACTTCATCAACTGTCCAAAAACTAGCGACAGCTTT 14195
| | | || ||| ||| ||||| ||||| || | |||||||| || | |||||
Sbjct 444292 T-GACGAAGATCGGAAGACAGATCGACTTCCTCTGCGGTCCAAAACGACGCTTCGGCTTT 444350
Query 14196 TTTATACATTACCCATATTTCT 14217
|| |||||| |||||| ||||
Sbjct 444351 CTTGTACATTTCCCATACTTCT 444372
Score = 143 bits (158), Expect = 3e-29
Identities = 371/562 (66%), Gaps = 5/562 (1%)
Strand=Plus/Plus
Query 13657 AAACACGCAAAATCACAATGAAGGCCCTCATCTCTACTAATAAGTTCGTTTGAAAATGTT 13716
|| || || |||||||| || || || ||||||| || | |||||||| || |||
Sbjct 446950 AAGCAAGCGAAATCACAGTGGAGACCTTCATCTCGTGAGATTAACTCGTTTGAGAAAGTT 447009
Query 13717 AATCCTGGCATCAATCCTCGtttttttAACCAAAATATTGCAGCGAATGATCCGGAAAAG 13776
||||| ||||| || || | ||||||||||||||||| ||| ||| |||||| ||
Sbjct 447010 AATCCGGGCATTAACCCCCTCTTTTTTAACCAAAATATGGCACAGAAACTTCCGGAGAAA 447069
Query 13777 AATATTCCCTCAACTGCAGCAAACGCTATTAGTCGTTCTCCAAACGATGCTTTTTTGTTT 13836
|| || ||||| || |||||| || |||| ||||| | || | | || ||
Sbjct 447070 AAGATCCCCTCTACGCAAGCAAAAGCGATTAACCGTTCGGCGAAAGTTTCTCCGCCGT-- 447127
Query 13837 GATATCCATTTTCTAGCCCATTCAGAtttttttttAATAAAATCCATTGTTTCGATTGCA 13896
|||||||| ||||||| || | |||||| | | | || || ||||| ||
Sbjct 447128 -CGATCCATTTCATAGCCCACTCGGCTTTTTTAGCCACACACGGCACCGTCTCGATGGCG 447186
Query 13897 TTGAATAAATGTTCCTTCTCTTTAGTACTTGAAATGTATGTATCAATAAGTAAGCTATAC 13956
||| | | | | ||| || | | | | ||||| || || | ||| | || |||
Sbjct 447187 CGGAAAAGACGGTTCTTTTCATCGGAATCTTTTATGTAAGTCTCGAGAAGGAGACTGTAC 447246
Query 13957 ATTTCAGAGTGTATGTTTTCTATAGCTATCTGAAAACCATAAAAACATCTAGCTTCTGAC 14016
|| || ||||| || ||||| ||||| || || |||||||||||| | || || ||
Sbjct 447247 ATCTCGGAGTGGATATTTTCGATAGCGATTTGGAAACCATAAAAAGCACGCGCCTCGGAG 447306
Query 14017 CATTGTACCTCCGAGTAAAATCTTTCTGCCAAGTTTTCATTAACAATACCATCACTAGCT 14076
|| ||||| || | | || | ||| ||| || || ||||| ||
Sbjct 447307 ATCTGGACCTCTTTCATGAACCGAACAGCAAGGTTCTCAAGGACTATGCCATCGGAGGCG 447366
Query 14077 GCAAAAAATGCCAATATGTTTTTAATAAAGTATTGCTCTTCATTGTTGAGTTTTTTCCAA 14136
|| ||||| || | | || |||| |||| ||||| || | |||| ||| |||
Sbjct 447367 GCGAAAAAGGCGAGAACGTGACTAATGAAGTGATGCTCATCGGCGGTGAGAGTTTCCCAG 447426
Query 14137 TCGGCTAA-ATCCTTAGAAAGATCTACTTCATCAACTGTCCAAAAACTAGCGACAGCTTT 14195
| | | || ||| ||| ||||| ||||| || | |||||||| || | |||||
Sbjct 447427 T-GACGAAGATCGGAAGACAGATCGACTTCCTCTGCGGTCCAAAACGACGCTTCGGCTTT 447485
Query 14196 TTTATACATTACCCATATTTCT 14217
|| |||||| |||||| ||||
Sbjct 447486 CTTGTACATTTCCCATACTTCT 447507
>seq29212
Length=358297
Score = 102 bits (112), Expect = 8e-17
Identities = 121/164 (74%), Gaps = 0/164 (0%)
Strand=Plus/Minus
Query 13657 AAACACGCAAAATCACAATGAAGGCCCTCATCTCTACTAATAAGTTCGTTTGAAAATGTT 13716
|| || ||||| || ||||| || || ||||||| | || | |||||||| || |||
Sbjct 223226 AAGCAAGCAAAGTCGCAATGGAGACCTTCATCTCGAGAGATCAACTCGTTTGAGAAAGTT 223167
Query 13717 AATCCTGGCATCAATCCTCGtttttttAACCAAAATATTGCAGCGAATGATCCGGAAAAG 13776
||||| ||||| || || || ||||||||||||||||| ||| ||| ||||| ||
Sbjct 223166 AATCCAGGCATTAACCCGCGCTTTTTTAACCAAAATATCGCACAGAAACTGCCGGAGAAA 223107
Query 13777 AATATTCCCTCAACTGCAGCAAACGCTATTAGTCGTTCTCCAAA 13820
||||| || || || ||| || || |||| ||||| ||||
Sbjct 223106 AATATGCCTTCTACGCAAGCGAAAGCGATTAACCGTTCGGCAAA 223063
>seq28581
Length=397638
Score = 98.7 bits (108), Expect = 9e-16
Identities = 120/164 (73%), Gaps = 0/164 (0%)
Strand=Plus/Plus
Query 13657 AAACACGCAAAATCACAATGAAGGCCCTCATCTCTACTAATAAGTTCGTTTGAAAATGTT 13716
|| || ||||| || ||||| || || ||||||| | || | |||||||| || |||
Sbjct 34080 AAGCAAGCAAAGTCGCAATGGAGACCTTCATCTCGAGAGATCAACTCGTTTGAGAAAGTT 34139
Query 13717 AATCCTGGCATCAATCCTCGtttttttAACCAAAATATTGCAGCGAATGATCCGGAAAAG 13776
||||| ||||| || || || ||||||||||||||||| || ||| ||||| ||
Sbjct 34140 AATCCAGGCATTAACCCGCGCTTTTTTAACCAAAATATCGCGCAGAAACTGCCGGAGAAA 34199
Query 13777 AATATTCCCTCAACTGCAGCAAACGCTATTAGTCGTTCTCCAAA 13820
||||| || || || ||| || || |||| ||||| ||||
Sbjct 34200 AATATGCCTTCTACGCAAGCGAAAGCGATTAACCGTTCGGCAAA 34243
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 478410818807640
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |