Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Gossypium_20barbadense_20[genbank_20GCA_5F001856525.1_202016-11-03] 29,751 sequences; 2,566,742,836 total letters Query= NC_004778.3 Length=129593 Score E Sequences producing significant alignments: (Bits) Value seq8609 102 7e-17 seq14353 100 2e-16 seq2343 98.7 8e-16 seq481 95.1 1e-14 seq15394 87.8 1e-12 seq29489 84.2 2e-11 seq12924 84.2 2e-11 seq10219 84.2 2e-11 seq2911 84.2 2e-11 >seq8609 Length=114046 Score = 102 bits (112), Expect = 7e-17 Identities = 143/198 (72%), Gaps = 2/198 (1%) Strand=Plus/Minus Query 18845 GTAGACTCCTTTTGAATATTGTAATCCGCCATTGTTTTGGCGTCCTCCAGCTGTTTACCC 18904 || ||||||||||||||||||||||| |||| || | | || ||||||||||| || Sbjct 21357 GTGGACTCCTTTTGAATATTGTAATCAGCCAAAGTCCTTCCATCTTCCAGCTGTTTCCCA 21298 Query 18905 GCATAAATAAGTCTCTGCTGATCCACGGGCACGCCCTCTTTGTCGGCAATTTTCTGTTTT 18964 ||| |||| | || |||||||| || | || |||||||| ||| ||| ||| Sbjct 21297 GCAAAAATCAACCTTTGCTGATCTGGTGGAATTCCTTCTTTGTCCTGAATCTTCGCTTTC 21238 Query 18965 ACCTGGCCGACAGTATCGCCAG-GCTCCGTTTCGACGGTAATGGTTTTACCTGTTAAAGT 19023 || | | | ||||| | || |||| ||| | |||||||| ||||| || ||||| Sbjct 21237 ACGTTATCAATCGTATC-CGAGCTCTCCACTTCTAAAGTAATGGTCTTACCGGTCAAAGT 21179 Query 19024 TTTGACAAAAATTTGCAT 19041 ||||| || || ||||| Sbjct 21178 CTTGACGAAGATCTGCAT 21161 >seq14353 Length=57137 Score = 100 bits (110), Expect = 2e-16 Identities = 144/203 (71%), Gaps = 0/203 (0%) Strand=Plus/Minus Query 18839 TGCAACGTAGACTCCTTTTGAATATTGTAATCCGCCATTGTTTTGGCGTCCTCCAGCTGT 18898 |||| ||||||||||| || |||||||| || || | ||| ||||||||| ||| Sbjct 55309 TGCAGAGTAGACTCCTTCTGGATATTGTAGTCAGCTAGAGTTCGACCGTCCTCCAACTGC 55250 Query 18899 TTACCCGCATAAATAAGTCTCTGCTGATCCACGGGCACGCCCTCTTTGTCGGCAATTTTC 18958 || || ||| | || | |||||||||||| ||| | ||||| ||||| ||| || Sbjct 55249 TTCCCAGCAAAGATCAACCTCTGCTGATCCGGGGGAATTCCCTCCTTGTCCTGAATCTTT 55190 Query 18959 TGTTTTACCTGGCCGACAGTATCGCCAGGCTCCGTTTCGACGGTAATGGTTTTACCTGTT 19018 |||||| | | | | ||||| | ||| ||| | |||||| || || ||||| Sbjct 55189 GCTTTTACATTGTCAATCGTATCAGAACTCTCAACTTCCAAGGTAATAGTCTTTCCTGTG 55130 Query 19019 AAAGTTTTGACAAAAATTTGCAT 19041 | || || |||||||||||||| Sbjct 55129 AGGGTCTTCACAAAAATTTGCAT 55107 >seq2343 Length=47720 Score = 98.7 bits (108), Expect = 8e-16 Identities = 142/198 (72%), Gaps = 2/198 (1%) Strand=Plus/Minus Query 18845 GTAGACTCCTTTTGAATATTGTAATCCGCCATTGTTTTGGCGTCCTCCAGCTGTTTACCC 18904 || ||||||||||||||||||||||| |||| || | |||| ||||| ||||| || Sbjct 23780 GTGGACTCCTTTTGAATATTGTAATCAGCCAAAGTCCTTCCGTCTTCCAGTTGTTTCCCA 23721 Query 18905 GCATAAATAAGTCTCTGCTGATCCACGGGCACGCCCTCTTTGTCGGCAATTTTCTGTTTT 18964 ||| |||| | || |||||||| || | || |||||||| ||| ||| ||| Sbjct 23720 GCAAAAATCAACCTTTGCTGATCTGGTGGAATTCCTTCTTTGTCCTGAATCTTCGCTTTC 23661 Query 18965 ACCTGGCCGACAGTATCGCCAG-GCTCCGTTTCGACGGTAATGGTTTTACCTGTTAAAGT 19023 || | | | ||||| | || |||| ||| | ||||| || ||||| || ||||| Sbjct 23660 ACGTTATCAATCGTATC-CGAGCTCTCCACTTCTAAAGTAATCGTCTTACCGGTCAAAGT 23602 Query 19024 TTTGACAAAAATTTGCAT 19041 ||||| || || ||||| Sbjct 23601 CTTGACGAAGATCTGCAT 23584 >seq481 Length=542854 Score = 95.1 bits (104), Expect = 1e-14 Identities = 145/204 (71%), Gaps = 2/204 (1%) Strand=Plus/Minus Query 18839 TGCAACGTAGACTCCTTTTGAATATTGTAATCCGCCATTGTTTTGGCGTCCTCCAGCTGT 18898 |||| ||||||||||| || |||||||| || || | ||| ||||||||| ||| Sbjct 259048 TGCAGAGTAGACTCCTTCTGGATATTGTAGTCAGCTAGGGTTCGACCGTCCTCCAACTGC 258989 Query 18899 TTACCCGCATAAATAAGTCTCTGCTGATCCACGGGCACGCCCTCTTTGTCGGCAATTTTC 18958 || || ||| | || | |||||||||||| ||| | ||||| ||||| ||| || Sbjct 258988 TTCCCAGCAAAGATCAACCTCTGCTGATCCGGGGGAATTCCCTCCTTGTCCTGAATCTTT 258929 Query 18959 TGTTTTACCTGGCCGACAGTATCGCCAG-GCTCCGTTTCGACGGTAATGGTTTTACCTGT 19017 |||||| | | | | ||||| | || ||| || | ||| |||||||| || || Sbjct 258928 GCTTTTACATTGTCAATCGTATC-CGAGCTCTCAACCTCCAGGGTGATGGTTTTCCCAGT 258870 Query 19018 TAAAGTTTTGACAAAAATTTGCAT 19041 || || |||||||| || ||||| Sbjct 258869 CAAGGTCTTGACAAATATCTGCAT 258846 Score = 84.2 bits (92), Expect = 2e-11 Identities = 156/229 (68%), Gaps = 0/229 (0%) Strand=Plus/Minus Query 18813 TTCCTCCTCGCAACCTTAACACCATGTGCAACGTAGACTCCTTTTGAATATTGTAATCCG 18872 |||| || |||| | | ||||| ||| | || ||||| || |||||||| ||||| | Sbjct 258618 TTCCACCACGCAGGCGAAGCACCAAGTGGAGGGTTGACTCTTTCTGAATATTATAATCAG 258559 Query 18873 CCATTGTTTTGGCGTCCTCCAGCTGTTTACCCGCATAAATAAGTCTCTGCTGATCCACGG 18932 | | || | | ||||||||||| || || ||| |||| || ||||| |||||| | Sbjct 258558 CAAGGGTCCTCCCATCCTCCAGCTGCTTGCCAGCAAAAATCAGCCTCTGTTGATCCGGTG 258499 Query 18933 GCACGCCCTCTTTGTCGGCAATTTTCTGTTTTACCTGGCCGACAGTATCGCCAGGCTCCG 18992 | | || || ||||| || || ||| || | | | | ||||| | ||| Sbjct 258498 GAATACCTTCCTTGTCCTGGATCTTAGCTTTCACATTGTCAATCGTATCAGAACTCTCAA 258439 Query 18993 TTTCGACGGTAATGGTTTTACCTGTTAAAGTTTTGACAAAAATTTGCAT 19041 ||| | |||||| || || ||||| | || || ||||||| |||||| Sbjct 258438 CTTCCAAGGTAATAGTCTTTCCTGTGAGGGTCTTCACAAAAACTTGCAT 258390 >seq15394 Length=389208 Score = 87.8 bits (96), Expect = 1e-12 Identities = 146/211 (69%), Gaps = 0/211 (0%) Strand=Plus/Minus Query 18832 CACCATGTGCAACGTAGACTCCTTTTGAATATTGTAATCCGCCATTGTTTTGGCGTCCTC 18891 ||||| ||| | || |||||||| || || || || || |||| || | | ||||| Sbjct 122140 CACCAAGTGGAGGGTGGACTCCTTCTGGATGTTATAGTCAGCCAGGGTACAGCCATCCTC 122081 Query 18892 CAGCTGTTTACCCGCATAAATAAGTCTCTGCTGATCCACGGGCACGCCCTCTTTGTCGGC 18951 ||| || ||||| ||| |||| || ||||| || || ||| | ||||| ||||| Sbjct 122080 CAGTTGCTTACCAGCAAAAATCAGCCTCTGTTGGTCTGGGGGGATTCCCTCCTTGTCCTG 122021 Query 18952 AATTTTCTGTTTTACCTGGCCGACAGTATCGCCAGGCTCCGTTTCGACGGTAATGGTTTT 19011 |||||| || || | | | | ||||| | ||| || | |||||||| || Sbjct 122020 AATTTTTGCCTTAACATTGTCAATGGTATCTGAACTCTCTACCTCCAATGTAATGGTCTT 121961 Query 19012 ACCTGTTAAAGTTTTGACAAAAATTTGCATT 19042 || || ||||| || ||||||||||||||| Sbjct 121960 CCCAGTCAAAGTCTTAACAAAAATTTGCATT 121930 >seq29489 Length=97735 Score = 84.2 bits (92), Expect = 2e-11 Identities = 100/136 (74%), Gaps = 0/136 (0%) Strand=Plus/Plus Query 18813 TTCCTCCTCGCAACCTTAACACCATGTGCAACGTAGACTCCTTTTGAATATTGTAATCCG 18872 ||||||||| | |||||| || | ||| | || ||||||||||| || || ||||| | Sbjct 31829 TTCCTCCTCTAAGCCTTAAAACTAGGTGAAGAGTGGACTCCTTTTGGATGTTATAATCAG 31888 Query 18873 CCATTGTTTTGGCGTCCTCCAGCTGTTTACCCGCATAAATAAGTCTCTGCTGATCCACGG 18932 | | ||| | | || ||||| || ||||| ||| |||| | ||||||||||| | Sbjct 31889 CTAGGGTTCGGCCATCTTCCAGTTGCTTACCAGCAAAAATCAACCTCTGCTGATCAGGAG 31948 Query 18933 GCACGCCCTCTTTGTC 18948 | | ||||||||| || Sbjct 31949 GGATGCCCTCTTTATC 31964 >seq12924 Length=310248 Score = 84.2 bits (92), Expect = 2e-11 Identities = 156/229 (68%), Gaps = 0/229 (0%) Strand=Plus/Minus Query 18813 TTCCTCCTCGCAACCTTAACACCATGTGCAACGTAGACTCCTTTTGAATATTGTAATCCG 18872 |||| || |||| | | ||||| ||||| || ||||||||||| || || ||||||| Sbjct 60038 TTCCACCACGCAGTCGCAGCACCAAGTGCAGGGTTGACTCCTTTTGGATGTTATAATCCG 59979 Query 18873 CCATTGTTTTGGCGTCCTCCAGCTGTTTACCCGCATAAATAAGTCTCTGCTGATCCACGG 18932 | | || | | ||||| ||||| || || ||| |||| | ||||||||||| | Sbjct 59978 CAAGCGTCCTCCCATCCTCGAGCTGCTTTCCGGCAAAAATCAACCTCTGCTGATCTGGTG 59919 Query 18933 GCACGCCCTCTTTGTCGGCAATTTTCTGTTTTACCTGGCCGACAGTATCGCCAGGCTCCG 18992 | | ||||| ||||| ||| ||| || || | | | ||||| | |||| Sbjct 59918 GGATACCCTCCTTGTCCTGAATCTTCGCCTTAACATTATCAATGGTATCAGAACTCTCCA 59859 Query 18993 TTTCGACGGTAATGGTTTTACCTGTTAAAGTTTTGACAAAAATTTGCAT 19041 || | || |||||||| || || | ||||| ||||| || ||||| Sbjct 59858 CCTCCAAAGTGATGGTTTTTCCGGTGAGGGTTTTTACAAATATCTGCAT 59810 >seq10219 Length=308859 Score = 84.2 bits (92), Expect = 2e-11 Identities = 148/213 (69%), Gaps = 2/213 (1%) Strand=Plus/Minus Query 18830 AACACCATGTGCAACGTAGACTCCTTTTGAATATTGTAATCCGCCATTGTTTTGGCGTCC 18889 || |||| |||| || || ||||||||||| || || ||||| | ||| | | ||| Sbjct 23448 AAAACCAAATGCAGGGTGGATTCCTTTTGAATGTTATAGTCCGCAAGTGTCCTCCCATCC 23389 Query 18890 TCCAGCTGTTTACCCGCATAAATAAGTCTCTGCTGATCCACGGGCACGCCCTCTTTGTCG 18949 || ||||| || || ||| |||| | |||||||| || || | ||||| ||||| Sbjct 23388 TCAAGCTGCTTTCCGGCAAAAATCAACCTCTGCTGGTCTGGAGGAATCCCCTCCTTGTCC 23329 Query 18950 GCAATTTTCTGTTTTACCTGGCCGACAGTATCGCCAG-GCTCCGTTTCGACGGTAATGGT 19008 ||||||| ||| || | | | | || || | || ||| || | ||| ||||| Sbjct 23328 TGAATTTTCGCTTTAACATTGTCAATGGTGTC-CGAGCTCTCGACCTCCAGGGTGATGGT 23270 Query 19009 TTTACCTGTTAAAGTTTTGACAAAAATTTGCAT 19041 |||||| || || || || ||||| || ||||| Sbjct 23269 TTTACCAGTCAAGGTCTTAACAAATATCTGCAT 23237 >seq2911 Length=225525 Score = 84.2 bits (92), Expect = 2e-11 Identities = 100/136 (74%), Gaps = 0/136 (0%) Strand=Plus/Plus Query 18813 TTCCTCCTCGCAACCTTAACACCATGTGCAACGTAGACTCCTTTTGAATATTGTAATCCG 18872 ||||||||| | |||||| || | ||| | || ||||||||||| || || ||||| | Sbjct 22909 TTCCTCCTCTAAGCCTTAAAACTAGGTGAAGAGTGGACTCCTTTTGGATGTTATAATCAG 22968 Query 18873 CCATTGTTTTGGCGTCCTCCAGCTGTTTACCCGCATAAATAAGTCTCTGCTGATCCACGG 18932 | | ||| | | || ||||| || ||||| ||| |||| | ||||||||||| | Sbjct 22969 CTAGGGTTCGGCCATCTTCCAGTTGCTTACCAGCAAAAATCAACCTCTGCTGATCAGGAG 23028 Query 18933 GCACGCCCTCTTTGTC 18948 | | ||||||||| || Sbjct 23029 GGATGCCCTCTTTATC 23044 Score = 84.2 bits (92), Expect = 2e-11 Identities = 100/136 (74%), Gaps = 0/136 (0%) Strand=Plus/Plus Query 18813 TTCCTCCTCGCAACCTTAACACCATGTGCAACGTAGACTCCTTTTGAATATTGTAATCCG 18872 ||||||||| | |||||| || | ||| | || ||||||||||| || || ||||| | Sbjct 29023 TTCCTCCTCTAAGCCTTAAAACTAGGTGAAGAGTGGACTCCTTTTGGATGTTATAATCAG 29082 Query 18873 CCATTGTTTTGGCGTCCTCCAGCTGTTTACCCGCATAAATAAGTCTCTGCTGATCCACGG 18932 | | ||| | | || ||||| || ||||| ||| |||| | ||||||||||| | Sbjct 29083 CTAGGGTTCGGCCATCTTCCAGTTGCTTACCAGCAAAAATCAACCTCTGCTGATCAGGAG 29142 Query 18933 GCACGCCCTCTTTGTC 18948 | | ||||||||| || Sbjct 29143 GGATGCCCTCTTTATC 29158 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 414422479918894