Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Gossypium_20barbadense_20[genbank_20GCA_5F001856525.1_202016-11-03]
29,751 sequences; 2,566,742,836 total letters
Query= NC_004778.3
Length=129593
Score E
Sequences producing significant alignments: (Bits) Value
seq8609 102 7e-17
seq14353 100 2e-16
seq2343 98.7 8e-16
seq481 95.1 1e-14
seq15394 87.8 1e-12
seq29489 84.2 2e-11
seq12924 84.2 2e-11
seq10219 84.2 2e-11
seq2911 84.2 2e-11
>seq8609
Length=114046
Score = 102 bits (112), Expect = 7e-17
Identities = 143/198 (72%), Gaps = 2/198 (1%)
Strand=Plus/Minus
Query 18845 GTAGACTCCTTTTGAATATTGTAATCCGCCATTGTTTTGGCGTCCTCCAGCTGTTTACCC 18904
|| ||||||||||||||||||||||| |||| || | | || ||||||||||| ||
Sbjct 21357 GTGGACTCCTTTTGAATATTGTAATCAGCCAAAGTCCTTCCATCTTCCAGCTGTTTCCCA 21298
Query 18905 GCATAAATAAGTCTCTGCTGATCCACGGGCACGCCCTCTTTGTCGGCAATTTTCTGTTTT 18964
||| |||| | || |||||||| || | || |||||||| ||| ||| |||
Sbjct 21297 GCAAAAATCAACCTTTGCTGATCTGGTGGAATTCCTTCTTTGTCCTGAATCTTCGCTTTC 21238
Query 18965 ACCTGGCCGACAGTATCGCCAG-GCTCCGTTTCGACGGTAATGGTTTTACCTGTTAAAGT 19023
|| | | | ||||| | || |||| ||| | |||||||| ||||| || |||||
Sbjct 21237 ACGTTATCAATCGTATC-CGAGCTCTCCACTTCTAAAGTAATGGTCTTACCGGTCAAAGT 21179
Query 19024 TTTGACAAAAATTTGCAT 19041
||||| || || |||||
Sbjct 21178 CTTGACGAAGATCTGCAT 21161
>seq14353
Length=57137
Score = 100 bits (110), Expect = 2e-16
Identities = 144/203 (71%), Gaps = 0/203 (0%)
Strand=Plus/Minus
Query 18839 TGCAACGTAGACTCCTTTTGAATATTGTAATCCGCCATTGTTTTGGCGTCCTCCAGCTGT 18898
|||| ||||||||||| || |||||||| || || | ||| ||||||||| |||
Sbjct 55309 TGCAGAGTAGACTCCTTCTGGATATTGTAGTCAGCTAGAGTTCGACCGTCCTCCAACTGC 55250
Query 18899 TTACCCGCATAAATAAGTCTCTGCTGATCCACGGGCACGCCCTCTTTGTCGGCAATTTTC 18958
|| || ||| | || | |||||||||||| ||| | ||||| ||||| ||| ||
Sbjct 55249 TTCCCAGCAAAGATCAACCTCTGCTGATCCGGGGGAATTCCCTCCTTGTCCTGAATCTTT 55190
Query 18959 TGTTTTACCTGGCCGACAGTATCGCCAGGCTCCGTTTCGACGGTAATGGTTTTACCTGTT 19018
|||||| | | | | ||||| | ||| ||| | |||||| || || |||||
Sbjct 55189 GCTTTTACATTGTCAATCGTATCAGAACTCTCAACTTCCAAGGTAATAGTCTTTCCTGTG 55130
Query 19019 AAAGTTTTGACAAAAATTTGCAT 19041
| || || ||||||||||||||
Sbjct 55129 AGGGTCTTCACAAAAATTTGCAT 55107
>seq2343
Length=47720
Score = 98.7 bits (108), Expect = 8e-16
Identities = 142/198 (72%), Gaps = 2/198 (1%)
Strand=Plus/Minus
Query 18845 GTAGACTCCTTTTGAATATTGTAATCCGCCATTGTTTTGGCGTCCTCCAGCTGTTTACCC 18904
|| ||||||||||||||||||||||| |||| || | |||| ||||| ||||| ||
Sbjct 23780 GTGGACTCCTTTTGAATATTGTAATCAGCCAAAGTCCTTCCGTCTTCCAGTTGTTTCCCA 23721
Query 18905 GCATAAATAAGTCTCTGCTGATCCACGGGCACGCCCTCTTTGTCGGCAATTTTCTGTTTT 18964
||| |||| | || |||||||| || | || |||||||| ||| ||| |||
Sbjct 23720 GCAAAAATCAACCTTTGCTGATCTGGTGGAATTCCTTCTTTGTCCTGAATCTTCGCTTTC 23661
Query 18965 ACCTGGCCGACAGTATCGCCAG-GCTCCGTTTCGACGGTAATGGTTTTACCTGTTAAAGT 19023
|| | | | ||||| | || |||| ||| | ||||| || ||||| || |||||
Sbjct 23660 ACGTTATCAATCGTATC-CGAGCTCTCCACTTCTAAAGTAATCGTCTTACCGGTCAAAGT 23602
Query 19024 TTTGACAAAAATTTGCAT 19041
||||| || || |||||
Sbjct 23601 CTTGACGAAGATCTGCAT 23584
>seq481
Length=542854
Score = 95.1 bits (104), Expect = 1e-14
Identities = 145/204 (71%), Gaps = 2/204 (1%)
Strand=Plus/Minus
Query 18839 TGCAACGTAGACTCCTTTTGAATATTGTAATCCGCCATTGTTTTGGCGTCCTCCAGCTGT 18898
|||| ||||||||||| || |||||||| || || | ||| ||||||||| |||
Sbjct 259048 TGCAGAGTAGACTCCTTCTGGATATTGTAGTCAGCTAGGGTTCGACCGTCCTCCAACTGC 258989
Query 18899 TTACCCGCATAAATAAGTCTCTGCTGATCCACGGGCACGCCCTCTTTGTCGGCAATTTTC 18958
|| || ||| | || | |||||||||||| ||| | ||||| ||||| ||| ||
Sbjct 258988 TTCCCAGCAAAGATCAACCTCTGCTGATCCGGGGGAATTCCCTCCTTGTCCTGAATCTTT 258929
Query 18959 TGTTTTACCTGGCCGACAGTATCGCCAG-GCTCCGTTTCGACGGTAATGGTTTTACCTGT 19017
|||||| | | | | ||||| | || ||| || | ||| |||||||| || ||
Sbjct 258928 GCTTTTACATTGTCAATCGTATC-CGAGCTCTCAACCTCCAGGGTGATGGTTTTCCCAGT 258870
Query 19018 TAAAGTTTTGACAAAAATTTGCAT 19041
|| || |||||||| || |||||
Sbjct 258869 CAAGGTCTTGACAAATATCTGCAT 258846
Score = 84.2 bits (92), Expect = 2e-11
Identities = 156/229 (68%), Gaps = 0/229 (0%)
Strand=Plus/Minus
Query 18813 TTCCTCCTCGCAACCTTAACACCATGTGCAACGTAGACTCCTTTTGAATATTGTAATCCG 18872
|||| || |||| | | ||||| ||| | || ||||| || |||||||| ||||| |
Sbjct 258618 TTCCACCACGCAGGCGAAGCACCAAGTGGAGGGTTGACTCTTTCTGAATATTATAATCAG 258559
Query 18873 CCATTGTTTTGGCGTCCTCCAGCTGTTTACCCGCATAAATAAGTCTCTGCTGATCCACGG 18932
| | || | | ||||||||||| || || ||| |||| || ||||| |||||| |
Sbjct 258558 CAAGGGTCCTCCCATCCTCCAGCTGCTTGCCAGCAAAAATCAGCCTCTGTTGATCCGGTG 258499
Query 18933 GCACGCCCTCTTTGTCGGCAATTTTCTGTTTTACCTGGCCGACAGTATCGCCAGGCTCCG 18992
| | || || ||||| || || ||| || | | | | ||||| | |||
Sbjct 258498 GAATACCTTCCTTGTCCTGGATCTTAGCTTTCACATTGTCAATCGTATCAGAACTCTCAA 258439
Query 18993 TTTCGACGGTAATGGTTTTACCTGTTAAAGTTTTGACAAAAATTTGCAT 19041
||| | |||||| || || ||||| | || || ||||||| ||||||
Sbjct 258438 CTTCCAAGGTAATAGTCTTTCCTGTGAGGGTCTTCACAAAAACTTGCAT 258390
>seq15394
Length=389208
Score = 87.8 bits (96), Expect = 1e-12
Identities = 146/211 (69%), Gaps = 0/211 (0%)
Strand=Plus/Minus
Query 18832 CACCATGTGCAACGTAGACTCCTTTTGAATATTGTAATCCGCCATTGTTTTGGCGTCCTC 18891
||||| ||| | || |||||||| || || || || || |||| || | | |||||
Sbjct 122140 CACCAAGTGGAGGGTGGACTCCTTCTGGATGTTATAGTCAGCCAGGGTACAGCCATCCTC 122081
Query 18892 CAGCTGTTTACCCGCATAAATAAGTCTCTGCTGATCCACGGGCACGCCCTCTTTGTCGGC 18951
||| || ||||| ||| |||| || ||||| || || ||| | ||||| |||||
Sbjct 122080 CAGTTGCTTACCAGCAAAAATCAGCCTCTGTTGGTCTGGGGGGATTCCCTCCTTGTCCTG 122021
Query 18952 AATTTTCTGTTTTACCTGGCCGACAGTATCGCCAGGCTCCGTTTCGACGGTAATGGTTTT 19011
|||||| || || | | | | ||||| | ||| || | |||||||| ||
Sbjct 122020 AATTTTTGCCTTAACATTGTCAATGGTATCTGAACTCTCTACCTCCAATGTAATGGTCTT 121961
Query 19012 ACCTGTTAAAGTTTTGACAAAAATTTGCATT 19042
|| || ||||| || |||||||||||||||
Sbjct 121960 CCCAGTCAAAGTCTTAACAAAAATTTGCATT 121930
>seq29489
Length=97735
Score = 84.2 bits (92), Expect = 2e-11
Identities = 100/136 (74%), Gaps = 0/136 (0%)
Strand=Plus/Plus
Query 18813 TTCCTCCTCGCAACCTTAACACCATGTGCAACGTAGACTCCTTTTGAATATTGTAATCCG 18872
||||||||| | |||||| || | ||| | || ||||||||||| || || ||||| |
Sbjct 31829 TTCCTCCTCTAAGCCTTAAAACTAGGTGAAGAGTGGACTCCTTTTGGATGTTATAATCAG 31888
Query 18873 CCATTGTTTTGGCGTCCTCCAGCTGTTTACCCGCATAAATAAGTCTCTGCTGATCCACGG 18932
| | ||| | | || ||||| || ||||| ||| |||| | ||||||||||| |
Sbjct 31889 CTAGGGTTCGGCCATCTTCCAGTTGCTTACCAGCAAAAATCAACCTCTGCTGATCAGGAG 31948
Query 18933 GCACGCCCTCTTTGTC 18948
| | ||||||||| ||
Sbjct 31949 GGATGCCCTCTTTATC 31964
>seq12924
Length=310248
Score = 84.2 bits (92), Expect = 2e-11
Identities = 156/229 (68%), Gaps = 0/229 (0%)
Strand=Plus/Minus
Query 18813 TTCCTCCTCGCAACCTTAACACCATGTGCAACGTAGACTCCTTTTGAATATTGTAATCCG 18872
|||| || |||| | | ||||| ||||| || ||||||||||| || || |||||||
Sbjct 60038 TTCCACCACGCAGTCGCAGCACCAAGTGCAGGGTTGACTCCTTTTGGATGTTATAATCCG 59979
Query 18873 CCATTGTTTTGGCGTCCTCCAGCTGTTTACCCGCATAAATAAGTCTCTGCTGATCCACGG 18932
| | || | | ||||| ||||| || || ||| |||| | ||||||||||| |
Sbjct 59978 CAAGCGTCCTCCCATCCTCGAGCTGCTTTCCGGCAAAAATCAACCTCTGCTGATCTGGTG 59919
Query 18933 GCACGCCCTCTTTGTCGGCAATTTTCTGTTTTACCTGGCCGACAGTATCGCCAGGCTCCG 18992
| | ||||| ||||| ||| ||| || || | | | ||||| | ||||
Sbjct 59918 GGATACCCTCCTTGTCCTGAATCTTCGCCTTAACATTATCAATGGTATCAGAACTCTCCA 59859
Query 18993 TTTCGACGGTAATGGTTTTACCTGTTAAAGTTTTGACAAAAATTTGCAT 19041
|| | || |||||||| || || | ||||| ||||| || |||||
Sbjct 59858 CCTCCAAAGTGATGGTTTTTCCGGTGAGGGTTTTTACAAATATCTGCAT 59810
>seq10219
Length=308859
Score = 84.2 bits (92), Expect = 2e-11
Identities = 148/213 (69%), Gaps = 2/213 (1%)
Strand=Plus/Minus
Query 18830 AACACCATGTGCAACGTAGACTCCTTTTGAATATTGTAATCCGCCATTGTTTTGGCGTCC 18889
|| |||| |||| || || ||||||||||| || || ||||| | ||| | | |||
Sbjct 23448 AAAACCAAATGCAGGGTGGATTCCTTTTGAATGTTATAGTCCGCAAGTGTCCTCCCATCC 23389
Query 18890 TCCAGCTGTTTACCCGCATAAATAAGTCTCTGCTGATCCACGGGCACGCCCTCTTTGTCG 18949
|| ||||| || || ||| |||| | |||||||| || || | ||||| |||||
Sbjct 23388 TCAAGCTGCTTTCCGGCAAAAATCAACCTCTGCTGGTCTGGAGGAATCCCCTCCTTGTCC 23329
Query 18950 GCAATTTTCTGTTTTACCTGGCCGACAGTATCGCCAG-GCTCCGTTTCGACGGTAATGGT 19008
||||||| ||| || | | | | || || | || ||| || | ||| |||||
Sbjct 23328 TGAATTTTCGCTTTAACATTGTCAATGGTGTC-CGAGCTCTCGACCTCCAGGGTGATGGT 23270
Query 19009 TTTACCTGTTAAAGTTTTGACAAAAATTTGCAT 19041
|||||| || || || || ||||| || |||||
Sbjct 23269 TTTACCAGTCAAGGTCTTAACAAATATCTGCAT 23237
>seq2911
Length=225525
Score = 84.2 bits (92), Expect = 2e-11
Identities = 100/136 (74%), Gaps = 0/136 (0%)
Strand=Plus/Plus
Query 18813 TTCCTCCTCGCAACCTTAACACCATGTGCAACGTAGACTCCTTTTGAATATTGTAATCCG 18872
||||||||| | |||||| || | ||| | || ||||||||||| || || ||||| |
Sbjct 22909 TTCCTCCTCTAAGCCTTAAAACTAGGTGAAGAGTGGACTCCTTTTGGATGTTATAATCAG 22968
Query 18873 CCATTGTTTTGGCGTCCTCCAGCTGTTTACCCGCATAAATAAGTCTCTGCTGATCCACGG 18932
| | ||| | | || ||||| || ||||| ||| |||| | ||||||||||| |
Sbjct 22969 CTAGGGTTCGGCCATCTTCCAGTTGCTTACCAGCAAAAATCAACCTCTGCTGATCAGGAG 23028
Query 18933 GCACGCCCTCTTTGTC 18948
| | ||||||||| ||
Sbjct 23029 GGATGCCCTCTTTATC 23044
Score = 84.2 bits (92), Expect = 2e-11
Identities = 100/136 (74%), Gaps = 0/136 (0%)
Strand=Plus/Plus
Query 18813 TTCCTCCTCGCAACCTTAACACCATGTGCAACGTAGACTCCTTTTGAATATTGTAATCCG 18872
||||||||| | |||||| || | ||| | || ||||||||||| || || ||||| |
Sbjct 29023 TTCCTCCTCTAAGCCTTAAAACTAGGTGAAGAGTGGACTCCTTTTGGATGTTATAATCAG 29082
Query 18873 CCATTGTTTTGGCGTCCTCCAGCTGTTTACCCGCATAAATAAGTCTCTGCTGATCCACGG 18932
| | ||| | | || ||||| || ||||| ||| |||| | ||||||||||| |
Sbjct 29083 CTAGGGTTCGGCCATCTTCCAGTTGCTTACCAGCAAAAATCAACCTCTGCTGATCAGGAG 29142
Query 18933 GCACGCCCTCTTTGTC 18948
| | ||||||||| ||
Sbjct 29143 GGATGCCCTCTTTATC 29158
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 414422479918894
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |