Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Gossypium_20barbadense_20[genbank_20GCA_5F001856525.1_202016-11-03] 29,751 sequences; 2,566,742,836 total letters Query= NC_005038.1 Length=99657 Score E Sequences producing significant alignments: (Bits) Value seq2343 87.8 1e-12 seq8609 84.2 1e-11 >seq2343 Length=47720 Score = 87.8 bits (96), Expect = 1e-12 Identities = 151/218 (69%), Gaps = 6/218 (3%) Strand=Plus/Minus Query 33155 CGCAACACCAAATGCAATGTCGACTCTTTTTGTATATTGTAATCAGACAAATTGAGTTGG 33214 |||| |||| ||| | ||||| || || || ||||||||||| | ||| | | | Sbjct 23570 CGCAGGACCAGATGAAGAGTCGATTCCTTCTGGATATTGTAATCGGCTAAAGTCCGCCCG 23511 Query 33215 TCATCCAATTGCTTTCCACTAAATATTAAACGTTGCTGGTCCGTGGGTATGCCTTCTTT- 33273 || || | ||||||||| || || | |||||||||||| | || |||||||| || Sbjct 23510 TCCTCGAGTTGCTTTCCGGCGAAGATGAGACGTTGCTGGTCTGGCGGGATGCCTTCCTTG 23451 Query 33274 --TTCGCTAATCGCCTGTTTTACTGTTTGAATCGTGTCGTTGGGTTGAACGTCCAGAGTT 33331 || | | | || ||| || | | |||||||| | | || || ||||| Sbjct 23450 TCTTGGATTTTGGC---TTTCACGTTGTCGATCGTGTCAGAGCTCTCGACCTCGAGAGTG 23394 Query 33332 ATCGTTTTTCCCGTAAGAGTTTTTACGAAAATTTGCAT 33369 ||||| ||||||||||| || || ||||| |||||||| Sbjct 23393 ATCGTCTTTCCCGTAAGCGTCTTAACGAAGATTTGCAT 23356 >seq8609 Length=114046 Score = 84.2 bits (92), Expect = 1e-11 Identities = 150/218 (69%), Gaps = 6/218 (3%) Strand=Plus/Minus Query 33155 CGCAACACCAAATGCAATGTCGACTCTTTTTGTATATTGTAATCAGACAAATTGAGTTGG 33214 |||| |||| ||| | ||||| || || || ||||||||||| | ||| | | | Sbjct 21147 CGCAGGACCAGATGAAGAGTCGATTCCTTCTGGATATTGTAATCGGCTAAAGTCCGCCCG 21088 Query 33215 TCATCCAATTGCTTTCCACTAAATATTAAACGTTGCTGGTCCGTGGGTATGCCTTCTTT- 33273 || || | ||||||||| || || | |||||||||||| | || |||||||| || Sbjct 21087 TCCTCGAGTTGCTTTCCGGCGAAGATGAGACGTTGCTGGTCTGGCGGGATGCCTTCCTTG 21028 Query 33274 --TTCGCTAATCGCCTGTTTTACTGTTTGAATCGTGTCGTTGGGTTGAACGTCCAGAGTT 33331 || | | | || ||| || | | |||||||| | | || || ||||| Sbjct 21027 TCTTGGATTTTGGC---TTTCACGTTGTCGATCGTGTCAGAGCTCTCGACCTCGAGAGTG 20971 Query 33332 ATCGTTTTTCCCGTAAGAGTTTTTACGAAAATTTGCAT 33369 ||||| ||||| ||||| || || ||||| |||||||| Sbjct 20970 ATCGTCTTTCCGGTAAGCGTCTTAACGAAGATTTGCAT 20933 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 318662014330398