Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Gossypium_20barbadense_20[genbank_20GCA_5F001856525.1_202016-11-03]
29,751 sequences; 2,566,742,836 total letters
Query= NC_005038.1
Length=99657
Score E
Sequences producing significant alignments: (Bits) Value
seq2343 87.8 1e-12
seq8609 84.2 1e-11
>seq2343
Length=47720
Score = 87.8 bits (96), Expect = 1e-12
Identities = 151/218 (69%), Gaps = 6/218 (3%)
Strand=Plus/Minus
Query 33155 CGCAACACCAAATGCAATGTCGACTCTTTTTGTATATTGTAATCAGACAAATTGAGTTGG 33214
|||| |||| ||| | ||||| || || || ||||||||||| | ||| | | |
Sbjct 23570 CGCAGGACCAGATGAAGAGTCGATTCCTTCTGGATATTGTAATCGGCTAAAGTCCGCCCG 23511
Query 33215 TCATCCAATTGCTTTCCACTAAATATTAAACGTTGCTGGTCCGTGGGTATGCCTTCTTT- 33273
|| || | ||||||||| || || | |||||||||||| | || |||||||| ||
Sbjct 23510 TCCTCGAGTTGCTTTCCGGCGAAGATGAGACGTTGCTGGTCTGGCGGGATGCCTTCCTTG 23451
Query 33274 --TTCGCTAATCGCCTGTTTTACTGTTTGAATCGTGTCGTTGGGTTGAACGTCCAGAGTT 33331
|| | | | || ||| || | | |||||||| | | || || |||||
Sbjct 23450 TCTTGGATTTTGGC---TTTCACGTTGTCGATCGTGTCAGAGCTCTCGACCTCGAGAGTG 23394
Query 33332 ATCGTTTTTCCCGTAAGAGTTTTTACGAAAATTTGCAT 33369
||||| ||||||||||| || || ||||| ||||||||
Sbjct 23393 ATCGTCTTTCCCGTAAGCGTCTTAACGAAGATTTGCAT 23356
>seq8609
Length=114046
Score = 84.2 bits (92), Expect = 1e-11
Identities = 150/218 (69%), Gaps = 6/218 (3%)
Strand=Plus/Minus
Query 33155 CGCAACACCAAATGCAATGTCGACTCTTTTTGTATATTGTAATCAGACAAATTGAGTTGG 33214
|||| |||| ||| | ||||| || || || ||||||||||| | ||| | | |
Sbjct 21147 CGCAGGACCAGATGAAGAGTCGATTCCTTCTGGATATTGTAATCGGCTAAAGTCCGCCCG 21088
Query 33215 TCATCCAATTGCTTTCCACTAAATATTAAACGTTGCTGGTCCGTGGGTATGCCTTCTTT- 33273
|| || | ||||||||| || || | |||||||||||| | || |||||||| ||
Sbjct 21087 TCCTCGAGTTGCTTTCCGGCGAAGATGAGACGTTGCTGGTCTGGCGGGATGCCTTCCTTG 21028
Query 33274 --TTCGCTAATCGCCTGTTTTACTGTTTGAATCGTGTCGTTGGGTTGAACGTCCAGAGTT 33331
|| | | | || ||| || | | |||||||| | | || || |||||
Sbjct 21027 TCTTGGATTTTGGC---TTTCACGTTGTCGATCGTGTCAGAGCTCTCGACCTCGAGAGTG 20971
Query 33332 ATCGTTTTTCCCGTAAGAGTTTTTACGAAAATTTGCAT 33369
||||| ||||| ||||| || || ||||| ||||||||
Sbjct 20970 ATCGTCTTTCCGGTAAGCGTCTTAACGAAGATTTGCAT 20933
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 318662014330398
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |