Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Gossypium_20barbadense_20[genbank_20GCA_5F001856525.1_202016-11-03] 29,751 sequences; 2,566,742,836 total letters Query= NC_005137.2 Length=131160 Score E Sequences producing significant alignments: (Bits) Value seq5610 105 6e-18 seq2874 105 6e-18 seq16075 89.7 4e-13 seq25104 87.8 2e-12 seq12924 87.8 2e-12 seq9953 87.8 2e-12 seq8609 86.0 5e-12 seq2343 82.4 6e-11 >seq5610 Length=141783 Score = 105 bits (116), Expect = 6e-18 Identities = 145/203 (71%), Gaps = 0/203 (0%) Strand=Plus/Minus Query 20006 TGTAGTGTAGATTCTTTTTGTATGTTGTAATCGCCCATAGTTTTAGAATCTTCCAATTGT 20065 || || ||||| ||||| || ||||| ||||| ||| ||| | ||||||||||||| Sbjct 62635 TGAAGGGTAGACTCTTTCTGAATGTTATAATCAGCCAAAGTCCTCCCATCTTCCAATTGT 62576 Query 20066 TTGCCCGCATAAATAAGCCTCTGTTGATCGACGGGCACGCCTTCTTTGTCGGCAATTTTT 20125 ||||| ||| | || ||||| || ||||| || | ||||| || || ||| ||| Sbjct 62575 TTGCCGGCAAAGATGAGCCTTTGCTGATCAGGTGGGATTCCTTCCTTATCCTGAATCTTT 62516 Query 20126 TGTTTCACCTGGCCAACAGAATCGCCAGGTTCCGTTTCCACGGTAATGGTTTTGCCGGTC 20185 || || | | ||| | |||| ||| |||| ||| || |||||||||||| Sbjct 62515 GCCTTAACATTGTCAATGGTATCGGAGCTTTCAACCTCCAAGGTGATTGTTTTGCCGGTC 62456 Query 20186 AACGTTTTGACAAAAATTTGCAT 20208 || || ||||||||||| ||||| Sbjct 62455 AAAGTCTTGACAAAAATCTGCAT 62433 >seq2874 Length=261101 Score = 105 bits (116), Expect = 6e-18 Identities = 145/203 (71%), Gaps = 0/203 (0%) Strand=Plus/Minus Query 20006 TGTAGTGTAGATTCTTTTTGTATGTTGTAATCGCCCATAGTTTTAGAATCTTCCAATTGT 20065 || || ||||| ||||| || ||||| ||||| ||| ||| | ||||||||||||| Sbjct 216280 TGAAGGGTAGACTCTTTCTGAATGTTATAATCAGCCAAAGTCCTCCCATCTTCCAATTGT 216221 Query 20066 TTGCCCGCATAAATAAGCCTCTGTTGATCGACGGGCACGCCTTCTTTGTCGGCAATTTTT 20125 ||||| ||| | || ||||| || ||||| || | ||||| || || ||| ||| Sbjct 216220 TTGCCGGCAAAGATGAGCCTTTGCTGATCAGGTGGGATTCCTTCCTTATCCTGAATCTTT 216161 Query 20126 TGTTTCACCTGGCCAACAGAATCGCCAGGTTCCGTTTCCACGGTAATGGTTTTGCCGGTC 20185 || || | | ||| | |||| ||| |||| ||| || |||||||||||| Sbjct 216160 GCCTTAACATTGTCAATGGTATCGGAGCTTTCAACCTCCAAGGTGATTGTTTTGCCGGTC 216101 Query 20186 AACGTTTTGACAAAAATTTGCAT 20208 || || ||||||||||| ||||| Sbjct 216100 AAAGTCTTGACAAAAATCTGCAT 216078 >seq16075 Length=278268 Score = 89.7 bits (98), Expect = 4e-13 Identities = 145/209 (69%), Gaps = 0/209 (0%) Strand=Plus/Plus Query 20000 ACCAAATGTAGTGTAGATTCTTTTTGTATGTTGTAATCGCCCATAGTTTTAGAATCTTCC 20059 |||||||| || ||||| || || || || || |||||| | | |||| | |||||| Sbjct 276230 ACCAAATGGAGAGTAGACTCCTTCTGGATATTATAATCGGCAAGAGTTCTTCCATCTTCA 276289 Query 20060 AATTGTTTGCCCGCATAAATAAGCCTCTGTTGATCGACGGGCACGCCTTCTTTGTCGGCA 20119 | |||||| || ||| |||| | || ||||| || || | ||||||||||| | Sbjct 276290 AGTTGTTTTCCAGCAAAAATCAATCTTTGTTGGTCTGGTGGGATTCCTTCTTTGTCCTGA 276349 Query 20120 ATTTTTTGTTTCACCTGGCCAACAGAATCGCCAGGTTCCGTTTCCACGGTAATGGTTTTG 20179 || || |||||| | | ||| | ||| | || |||| |||||| || || Sbjct 276350 ATCTTGGCTTTCACATTGTCAATGGTATCCGAACTCTCGACCTCCAAGGTAATTGTCTTT 276409 Query 20180 CCGGTCAACGTTTTGACAAAAATTTGCAT 20208 || || | ||||||||||| |||||||| Sbjct 276410 CCAGTGAGAGTTTTGACAAAGATTTGCAT 276438 >seq25104 Length=148940 Score = 87.8 bits (96), Expect = 2e-12 Identities = 147/210 (70%), Gaps = 2/210 (1%) Strand=Plus/Minus Query 20000 ACCAAATGTAGTGTAGATTCTTTTTGTATGTTGTAATCGCCCATAGTTTTAGAATCTTCC 20059 |||||||| || ||||| || || || || || |||||| | | ||| | |||||| Sbjct 36284 ACCAAATGGAGAGTAGACTCCTTCTGGATATTATAATCGGCAAGAGTCCTTCCATCTTCA 36225 Query 20060 AATTGTTTGCCCGCATAAATAAGCCTCTGTTGATCGACGGGCACGCCTTCTTTGTCGGCA 20119 | |||||| || ||| |||| | || ||||| || || | ||||||||||| | Sbjct 36224 AGTTGTTTTCCAGCAAAAATCAATCTTTGTTGGTCTGGTGGGATTCCTTCTTTGTCCTGA 36165 Query 20120 ATTTTTTGTTTCACCTGGCCAACAGAATCGCCAGGT-TCCGTTTCCACGGTAATGGTTTT 20178 || || |||||| | ||| | ||| | || | ||| |||| |||||| || || Sbjct 36164 ATCTTGGCTTTCACATTATCAATGGTATC-CGAGCTCTCCACCTCCAAGGTAATTGTCTT 36106 Query 20179 GCCGGTCAACGTTTTGACAAAAATTTGCAT 20208 || || | ||||||||||| |||||||| Sbjct 36105 TCCAGTGAGAGTTTTGACAAAGATTTGCAT 36076 >seq12924 Length=310248 Score = 87.8 bits (96), Expect = 2e-12 Identities = 141/203 (69%), Gaps = 0/203 (0%) Strand=Plus/Minus Query 20006 TGTAGTGTAGATTCTTTTTGTATGTTGTAATCGCCCATAGTTTTAGAATCTTCCAATTGT 20065 || || || || || ||||| |||||||| ||| | | |||| ||| || | |||| Sbjct 59556 TGGAGGGTGGACTCCTTTTGGATGTTGTAGTCGGCAAGAGTTCGGCCATCCTCGAGTTGT 59497 Query 20066 TTGCCCGCATAAATAAGCCTCTGTTGATCGACGGGCACGCCTTCTTTGTCGGCAATTTTT 20125 || || ||| |||||||||||||||| || || | |||||||||||| ||||| Sbjct 59496 TTTCCGGCAAAAATAAGCCTCTGTTGGTCTGGAGGAATGCCTTCTTTGTCTTGGATTTTG 59437 Query 20126 TGTTTCACCTGGCCAACAGAATCGCCAGGTTCCGTTTCCACGGTAATGGTTTTGCCGGTC 20185 || || | ||| || |||| |||| || | ||| |||||||| || || Sbjct 59436 GCCTTGACATTATCAATAGTATCGGAGCTTTCCACCTCAAGGGTGATGGTTTTACCAGTA 59377 Query 20186 AACGTTTTGACAAAAATTTGCAT 20208 | ||||| ||||| || ||||| Sbjct 59376 AGGGTTTTCACAAAGATCTGCAT 59354 >seq9953 Length=604776 Score = 87.8 bits (96), Expect = 2e-12 Identities = 141/203 (69%), Gaps = 0/203 (0%) Strand=Plus/Plus Query 20006 TGTAGTGTAGATTCTTTTTGTATGTTGTAATCGCCCATAGTTTTAGAATCTTCCAATTGT 20065 || || || ||||| || || || |||||||| ||| ||| | ||||||||||||| Sbjct 353524 TGGAGAGTGGATTCCTTCTGAATATTGTAATCAGCCAAAGTCCTTCCATCTTCCAATTGT 353583 Query 20066 TTGCCCGCATAAATAAGCCTCTGTTGATCGACGGGCACGCCTTCTTTGTCGGCAATTTTT 20125 || || || |||| | ||| || ||||| || | ||||||||||| ||| || Sbjct 353584 TTCCCAGCGAAAATCAACCTTTGCTGATCTGGTGGAATCCCTTCTTTGTCCTGAATCTTC 353643 Query 20126 TGTTTCACCTGGCCAACAGAATCGCCAGGTTCCGTTTCCACGGTAATGGTTTTGCCGGTC 20185 || || | | | | | |||| | ||| |||| || |||||||| || ||| Sbjct 353644 GCCTTAACATTGTCGATCGTATCGGAACTCTCCACCTCCAAAGTTATGGTTTTCCCAGTC 353703 Query 20186 AACGTTTTGACAAAAATTTGCAT 20208 ||||| ||||| ||||| ||||| Sbjct 353704 AACGTCTTGACGAAAATCTGCAT 353726 Score = 87.8 bits (96), Expect = 2e-12 Identities = 141/203 (69%), Gaps = 0/203 (0%) Strand=Plus/Plus Query 20006 TGTAGTGTAGATTCTTTTTGTATGTTGTAATCGCCCATAGTTTTAGAATCTTCCAATTGT 20065 || || || ||||| || || || |||||||| ||| ||| | ||||||||||||| Sbjct 354650 TGGAGAGTGGATTCCTTCTGAATATTGTAATCAGCCAAAGTCCTTCCATCTTCCAATTGT 354709 Query 20066 TTGCCCGCATAAATAAGCCTCTGTTGATCGACGGGCACGCCTTCTTTGTCGGCAATTTTT 20125 || || || |||| | ||| || ||||| || | ||||||||||| ||| || Sbjct 354710 TTCCCAGCGAAAATCAACCTTTGCTGATCTGGTGGAATTCCTTCTTTGTCCTGAATCTTC 354769 Query 20126 TGTTTCACCTGGCCAACAGAATCGCCAGGTTCCGTTTCCACGGTAATGGTTTTGCCGGTC 20185 || || | | | | | |||| | ||| |||| || |||||||| || ||| Sbjct 354770 GCCTTAACATTGTCGATCGTATCGGAACTCTCCACCTCCAAAGTTATGGTTTTCCCAGTC 354829 Query 20186 AACGTTTTGACAAAAATTTGCAT 20208 ||||| ||||| ||||| ||||| Sbjct 354830 AACGTCTTGACGAAAATCTGCAT 354852 Score = 84.2 bits (92), Expect = 2e-11 Identities = 157/228 (69%), Gaps = 2/228 (1%) Strand=Plus/Plus Query 19982 CCTCCTCGTAACCTCAACACCAAATGTAGTGTAGATTCTTTTTGTATGTTGTAATCGCCC 20041 || || || | |||||| |||||||| || || || || || || |||||||||||| || Sbjct 354854 CCACCACGAAGCCTCAATACCAAATGGAGGGTGGACTCCTTCTGGATGTTGTAATCGGCC 354913 Query 20042 ATAGTTTTAGAATCTTCCAATTGTTTGCCCGCATAAATAAGCCTCTGTTGATCGACGGGC 20101 | || | || || | |||||| || ||| | || ||||| || || || || Sbjct 354914 AAGGTGCGACCGTCCTCGAGTTGTTTCCCGGCAAATATGAGCCTTTGCTGGTCTGGTGGG 354973 Query 20102 ACGCCTTCTTTGTCGGCAATTTTTTGTTTCACCTGGCCAACAGAATCGCCAGGTTCCG-T 20160 | |||||| ||||| || ||| || || | | ||| | || || || || Sbjct 354974 ATGCCTTCCTTGTCTTGGATCTTTGCCTTGACGTTGTCAATGGTGTC-AGAGCTTTCGAC 355032 Query 20161 TTCCACGGTAATGGTTTTGCCGGTCAACGTTTTGACAAAAATTTGCAT 20208 ||||| || ||||| |||||||||| |||||||| || || ||||| Sbjct 355033 TTCCAAAGTTATGGTCTTGCCGGTCAGGGTTTTGACGAAGATCTGCAT 355080 >seq8609 Length=114046 Score = 86.0 bits (94), Expect = 5e-12 Identities = 143/204 (70%), Gaps = 2/204 (1%) Strand=Plus/Minus Query 20006 TGTAGTGTAGATTCTTTTTGTATGTTGTAATCGCCCATAGTTTTAGAATCTTCCAATTGT 20065 || || || || || ||||| || |||||||| ||| ||| | |||||||| ||| Sbjct 21363 TGAAGAGTGGACTCCTTTTGAATATTGTAATCAGCCAAAGTCCTTCCATCTTCCAGCTGT 21304 Query 20066 TTGCCCGCATAAATAAGCCTCTGTTGATCGACGGGCACGCCTTCTTTGTCGGCAATTTTT 20125 || || ||| |||| | ||| || ||||| || | ||||||||||| ||| || Sbjct 21303 TTCCCAGCAAAAATCAACCTTTGCTGATCTGGTGGAATTCCTTCTTTGTCCTGAATCTTC 21244 Query 20126 TGTTTCACCTGGCCAACAGAATCGCCAGGT-TCCGTTTCCACGGTAATGGTTTTGCCGGT 20184 |||||| | ||| | ||| | || | ||| ||| | |||||||| || ||||| Sbjct 21243 GCTTTCACGTTATCAATCGTATC-CGAGCTCTCCACTTCTAAAGTAATGGTCTTACCGGT 21185 Query 20185 CAACGTTTTGACAAAAATTTGCAT 20208 ||| || ||||| || || ||||| Sbjct 21184 CAAAGTCTTGACGAAGATCTGCAT 21161 >seq2343 Length=47720 Score = 82.4 bits (90), Expect = 6e-11 Identities = 142/204 (70%), Gaps = 2/204 (1%) Strand=Plus/Minus Query 20006 TGTAGTGTAGATTCTTTTTGTATGTTGTAATCGCCCATAGTTTTAGAATCTTCCAATTGT 20065 || || || || || ||||| || |||||||| ||| ||| | ||||||| |||| Sbjct 23786 TGAAGAGTGGACTCCTTTTGAATATTGTAATCAGCCAAAGTCCTTCCGTCTTCCAGTTGT 23727 Query 20066 TTGCCCGCATAAATAAGCCTCTGTTGATCGACGGGCACGCCTTCTTTGTCGGCAATTTTT 20125 || || ||| |||| | ||| || ||||| || | ||||||||||| ||| || Sbjct 23726 TTCCCAGCAAAAATCAACCTTTGCTGATCTGGTGGAATTCCTTCTTTGTCCTGAATCTTC 23667 Query 20126 TGTTTCACCTGGCCAACAGAATCGCCAGGT-TCCGTTTCCACGGTAATGGTTTTGCCGGT 20184 |||||| | ||| | ||| | || | ||| ||| | ||||| || || ||||| Sbjct 23666 GCTTTCACGTTATCAATCGTATC-CGAGCTCTCCACTTCTAAAGTAATCGTCTTACCGGT 23608 Query 20185 CAACGTTTTGACAAAAATTTGCAT 20208 ||| || ||||| || || ||||| Sbjct 23607 CAAAGTCTTGACGAAGATCTGCAT 23584 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 419435061746031