Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Gossypium_20barbadense_20[genbank_20GCA_5F001856525.1_202016-11-03]
29,751 sequences; 2,566,742,836 total letters
Query= NC_005137.2
Length=131160
Score E
Sequences producing significant alignments: (Bits) Value
seq5610 105 6e-18
seq2874 105 6e-18
seq16075 89.7 4e-13
seq25104 87.8 2e-12
seq12924 87.8 2e-12
seq9953 87.8 2e-12
seq8609 86.0 5e-12
seq2343 82.4 6e-11
>seq5610
Length=141783
Score = 105 bits (116), Expect = 6e-18
Identities = 145/203 (71%), Gaps = 0/203 (0%)
Strand=Plus/Minus
Query 20006 TGTAGTGTAGATTCTTTTTGTATGTTGTAATCGCCCATAGTTTTAGAATCTTCCAATTGT 20065
|| || ||||| ||||| || ||||| ||||| ||| ||| | |||||||||||||
Sbjct 62635 TGAAGGGTAGACTCTTTCTGAATGTTATAATCAGCCAAAGTCCTCCCATCTTCCAATTGT 62576
Query 20066 TTGCCCGCATAAATAAGCCTCTGTTGATCGACGGGCACGCCTTCTTTGTCGGCAATTTTT 20125
||||| ||| | || ||||| || ||||| || | ||||| || || ||| |||
Sbjct 62575 TTGCCGGCAAAGATGAGCCTTTGCTGATCAGGTGGGATTCCTTCCTTATCCTGAATCTTT 62516
Query 20126 TGTTTCACCTGGCCAACAGAATCGCCAGGTTCCGTTTCCACGGTAATGGTTTTGCCGGTC 20185
|| || | | ||| | |||| ||| |||| ||| || ||||||||||||
Sbjct 62515 GCCTTAACATTGTCAATGGTATCGGAGCTTTCAACCTCCAAGGTGATTGTTTTGCCGGTC 62456
Query 20186 AACGTTTTGACAAAAATTTGCAT 20208
|| || ||||||||||| |||||
Sbjct 62455 AAAGTCTTGACAAAAATCTGCAT 62433
>seq2874
Length=261101
Score = 105 bits (116), Expect = 6e-18
Identities = 145/203 (71%), Gaps = 0/203 (0%)
Strand=Plus/Minus
Query 20006 TGTAGTGTAGATTCTTTTTGTATGTTGTAATCGCCCATAGTTTTAGAATCTTCCAATTGT 20065
|| || ||||| ||||| || ||||| ||||| ||| ||| | |||||||||||||
Sbjct 216280 TGAAGGGTAGACTCTTTCTGAATGTTATAATCAGCCAAAGTCCTCCCATCTTCCAATTGT 216221
Query 20066 TTGCCCGCATAAATAAGCCTCTGTTGATCGACGGGCACGCCTTCTTTGTCGGCAATTTTT 20125
||||| ||| | || ||||| || ||||| || | ||||| || || ||| |||
Sbjct 216220 TTGCCGGCAAAGATGAGCCTTTGCTGATCAGGTGGGATTCCTTCCTTATCCTGAATCTTT 216161
Query 20126 TGTTTCACCTGGCCAACAGAATCGCCAGGTTCCGTTTCCACGGTAATGGTTTTGCCGGTC 20185
|| || | | ||| | |||| ||| |||| ||| || ||||||||||||
Sbjct 216160 GCCTTAACATTGTCAATGGTATCGGAGCTTTCAACCTCCAAGGTGATTGTTTTGCCGGTC 216101
Query 20186 AACGTTTTGACAAAAATTTGCAT 20208
|| || ||||||||||| |||||
Sbjct 216100 AAAGTCTTGACAAAAATCTGCAT 216078
>seq16075
Length=278268
Score = 89.7 bits (98), Expect = 4e-13
Identities = 145/209 (69%), Gaps = 0/209 (0%)
Strand=Plus/Plus
Query 20000 ACCAAATGTAGTGTAGATTCTTTTTGTATGTTGTAATCGCCCATAGTTTTAGAATCTTCC 20059
|||||||| || ||||| || || || || || |||||| | | |||| | ||||||
Sbjct 276230 ACCAAATGGAGAGTAGACTCCTTCTGGATATTATAATCGGCAAGAGTTCTTCCATCTTCA 276289
Query 20060 AATTGTTTGCCCGCATAAATAAGCCTCTGTTGATCGACGGGCACGCCTTCTTTGTCGGCA 20119
| |||||| || ||| |||| | || ||||| || || | ||||||||||| |
Sbjct 276290 AGTTGTTTTCCAGCAAAAATCAATCTTTGTTGGTCTGGTGGGATTCCTTCTTTGTCCTGA 276349
Query 20120 ATTTTTTGTTTCACCTGGCCAACAGAATCGCCAGGTTCCGTTTCCACGGTAATGGTTTTG 20179
|| || |||||| | | ||| | ||| | || |||| |||||| || ||
Sbjct 276350 ATCTTGGCTTTCACATTGTCAATGGTATCCGAACTCTCGACCTCCAAGGTAATTGTCTTT 276409
Query 20180 CCGGTCAACGTTTTGACAAAAATTTGCAT 20208
|| || | ||||||||||| ||||||||
Sbjct 276410 CCAGTGAGAGTTTTGACAAAGATTTGCAT 276438
>seq25104
Length=148940
Score = 87.8 bits (96), Expect = 2e-12
Identities = 147/210 (70%), Gaps = 2/210 (1%)
Strand=Plus/Minus
Query 20000 ACCAAATGTAGTGTAGATTCTTTTTGTATGTTGTAATCGCCCATAGTTTTAGAATCTTCC 20059
|||||||| || ||||| || || || || || |||||| | | ||| | ||||||
Sbjct 36284 ACCAAATGGAGAGTAGACTCCTTCTGGATATTATAATCGGCAAGAGTCCTTCCATCTTCA 36225
Query 20060 AATTGTTTGCCCGCATAAATAAGCCTCTGTTGATCGACGGGCACGCCTTCTTTGTCGGCA 20119
| |||||| || ||| |||| | || ||||| || || | ||||||||||| |
Sbjct 36224 AGTTGTTTTCCAGCAAAAATCAATCTTTGTTGGTCTGGTGGGATTCCTTCTTTGTCCTGA 36165
Query 20120 ATTTTTTGTTTCACCTGGCCAACAGAATCGCCAGGT-TCCGTTTCCACGGTAATGGTTTT 20178
|| || |||||| | ||| | ||| | || | ||| |||| |||||| || ||
Sbjct 36164 ATCTTGGCTTTCACATTATCAATGGTATC-CGAGCTCTCCACCTCCAAGGTAATTGTCTT 36106
Query 20179 GCCGGTCAACGTTTTGACAAAAATTTGCAT 20208
|| || | ||||||||||| ||||||||
Sbjct 36105 TCCAGTGAGAGTTTTGACAAAGATTTGCAT 36076
>seq12924
Length=310248
Score = 87.8 bits (96), Expect = 2e-12
Identities = 141/203 (69%), Gaps = 0/203 (0%)
Strand=Plus/Minus
Query 20006 TGTAGTGTAGATTCTTTTTGTATGTTGTAATCGCCCATAGTTTTAGAATCTTCCAATTGT 20065
|| || || || || ||||| |||||||| ||| | | |||| ||| || | ||||
Sbjct 59556 TGGAGGGTGGACTCCTTTTGGATGTTGTAGTCGGCAAGAGTTCGGCCATCCTCGAGTTGT 59497
Query 20066 TTGCCCGCATAAATAAGCCTCTGTTGATCGACGGGCACGCCTTCTTTGTCGGCAATTTTT 20125
|| || ||| |||||||||||||||| || || | |||||||||||| |||||
Sbjct 59496 TTTCCGGCAAAAATAAGCCTCTGTTGGTCTGGAGGAATGCCTTCTTTGTCTTGGATTTTG 59437
Query 20126 TGTTTCACCTGGCCAACAGAATCGCCAGGTTCCGTTTCCACGGTAATGGTTTTGCCGGTC 20185
|| || | ||| || |||| |||| || | ||| |||||||| || ||
Sbjct 59436 GCCTTGACATTATCAATAGTATCGGAGCTTTCCACCTCAAGGGTGATGGTTTTACCAGTA 59377
Query 20186 AACGTTTTGACAAAAATTTGCAT 20208
| ||||| ||||| || |||||
Sbjct 59376 AGGGTTTTCACAAAGATCTGCAT 59354
>seq9953
Length=604776
Score = 87.8 bits (96), Expect = 2e-12
Identities = 141/203 (69%), Gaps = 0/203 (0%)
Strand=Plus/Plus
Query 20006 TGTAGTGTAGATTCTTTTTGTATGTTGTAATCGCCCATAGTTTTAGAATCTTCCAATTGT 20065
|| || || ||||| || || || |||||||| ||| ||| | |||||||||||||
Sbjct 353524 TGGAGAGTGGATTCCTTCTGAATATTGTAATCAGCCAAAGTCCTTCCATCTTCCAATTGT 353583
Query 20066 TTGCCCGCATAAATAAGCCTCTGTTGATCGACGGGCACGCCTTCTTTGTCGGCAATTTTT 20125
|| || || |||| | ||| || ||||| || | ||||||||||| ||| ||
Sbjct 353584 TTCCCAGCGAAAATCAACCTTTGCTGATCTGGTGGAATCCCTTCTTTGTCCTGAATCTTC 353643
Query 20126 TGTTTCACCTGGCCAACAGAATCGCCAGGTTCCGTTTCCACGGTAATGGTTTTGCCGGTC 20185
|| || | | | | | |||| | ||| |||| || |||||||| || |||
Sbjct 353644 GCCTTAACATTGTCGATCGTATCGGAACTCTCCACCTCCAAAGTTATGGTTTTCCCAGTC 353703
Query 20186 AACGTTTTGACAAAAATTTGCAT 20208
||||| ||||| ||||| |||||
Sbjct 353704 AACGTCTTGACGAAAATCTGCAT 353726
Score = 87.8 bits (96), Expect = 2e-12
Identities = 141/203 (69%), Gaps = 0/203 (0%)
Strand=Plus/Plus
Query 20006 TGTAGTGTAGATTCTTTTTGTATGTTGTAATCGCCCATAGTTTTAGAATCTTCCAATTGT 20065
|| || || ||||| || || || |||||||| ||| ||| | |||||||||||||
Sbjct 354650 TGGAGAGTGGATTCCTTCTGAATATTGTAATCAGCCAAAGTCCTTCCATCTTCCAATTGT 354709
Query 20066 TTGCCCGCATAAATAAGCCTCTGTTGATCGACGGGCACGCCTTCTTTGTCGGCAATTTTT 20125
|| || || |||| | ||| || ||||| || | ||||||||||| ||| ||
Sbjct 354710 TTCCCAGCGAAAATCAACCTTTGCTGATCTGGTGGAATTCCTTCTTTGTCCTGAATCTTC 354769
Query 20126 TGTTTCACCTGGCCAACAGAATCGCCAGGTTCCGTTTCCACGGTAATGGTTTTGCCGGTC 20185
|| || | | | | | |||| | ||| |||| || |||||||| || |||
Sbjct 354770 GCCTTAACATTGTCGATCGTATCGGAACTCTCCACCTCCAAAGTTATGGTTTTCCCAGTC 354829
Query 20186 AACGTTTTGACAAAAATTTGCAT 20208
||||| ||||| ||||| |||||
Sbjct 354830 AACGTCTTGACGAAAATCTGCAT 354852
Score = 84.2 bits (92), Expect = 2e-11
Identities = 157/228 (69%), Gaps = 2/228 (1%)
Strand=Plus/Plus
Query 19982 CCTCCTCGTAACCTCAACACCAAATGTAGTGTAGATTCTTTTTGTATGTTGTAATCGCCC 20041
|| || || | |||||| |||||||| || || || || || || |||||||||||| ||
Sbjct 354854 CCACCACGAAGCCTCAATACCAAATGGAGGGTGGACTCCTTCTGGATGTTGTAATCGGCC 354913
Query 20042 ATAGTTTTAGAATCTTCCAATTGTTTGCCCGCATAAATAAGCCTCTGTTGATCGACGGGC 20101
| || | || || | |||||| || ||| | || ||||| || || || ||
Sbjct 354914 AAGGTGCGACCGTCCTCGAGTTGTTTCCCGGCAAATATGAGCCTTTGCTGGTCTGGTGGG 354973
Query 20102 ACGCCTTCTTTGTCGGCAATTTTTTGTTTCACCTGGCCAACAGAATCGCCAGGTTCCG-T 20160
| |||||| ||||| || ||| || || | | ||| | || || || ||
Sbjct 354974 ATGCCTTCCTTGTCTTGGATCTTTGCCTTGACGTTGTCAATGGTGTC-AGAGCTTTCGAC 355032
Query 20161 TTCCACGGTAATGGTTTTGCCGGTCAACGTTTTGACAAAAATTTGCAT 20208
||||| || ||||| |||||||||| |||||||| || || |||||
Sbjct 355033 TTCCAAAGTTATGGTCTTGCCGGTCAGGGTTTTGACGAAGATCTGCAT 355080
>seq8609
Length=114046
Score = 86.0 bits (94), Expect = 5e-12
Identities = 143/204 (70%), Gaps = 2/204 (1%)
Strand=Plus/Minus
Query 20006 TGTAGTGTAGATTCTTTTTGTATGTTGTAATCGCCCATAGTTTTAGAATCTTCCAATTGT 20065
|| || || || || ||||| || |||||||| ||| ||| | |||||||| |||
Sbjct 21363 TGAAGAGTGGACTCCTTTTGAATATTGTAATCAGCCAAAGTCCTTCCATCTTCCAGCTGT 21304
Query 20066 TTGCCCGCATAAATAAGCCTCTGTTGATCGACGGGCACGCCTTCTTTGTCGGCAATTTTT 20125
|| || ||| |||| | ||| || ||||| || | ||||||||||| ||| ||
Sbjct 21303 TTCCCAGCAAAAATCAACCTTTGCTGATCTGGTGGAATTCCTTCTTTGTCCTGAATCTTC 21244
Query 20126 TGTTTCACCTGGCCAACAGAATCGCCAGGT-TCCGTTTCCACGGTAATGGTTTTGCCGGT 20184
|||||| | ||| | ||| | || | ||| ||| | |||||||| || |||||
Sbjct 21243 GCTTTCACGTTATCAATCGTATC-CGAGCTCTCCACTTCTAAAGTAATGGTCTTACCGGT 21185
Query 20185 CAACGTTTTGACAAAAATTTGCAT 20208
||| || ||||| || || |||||
Sbjct 21184 CAAAGTCTTGACGAAGATCTGCAT 21161
>seq2343
Length=47720
Score = 82.4 bits (90), Expect = 6e-11
Identities = 142/204 (70%), Gaps = 2/204 (1%)
Strand=Plus/Minus
Query 20006 TGTAGTGTAGATTCTTTTTGTATGTTGTAATCGCCCATAGTTTTAGAATCTTCCAATTGT 20065
|| || || || || ||||| || |||||||| ||| ||| | ||||||| ||||
Sbjct 23786 TGAAGAGTGGACTCCTTTTGAATATTGTAATCAGCCAAAGTCCTTCCGTCTTCCAGTTGT 23727
Query 20066 TTGCCCGCATAAATAAGCCTCTGTTGATCGACGGGCACGCCTTCTTTGTCGGCAATTTTT 20125
|| || ||| |||| | ||| || ||||| || | ||||||||||| ||| ||
Sbjct 23726 TTCCCAGCAAAAATCAACCTTTGCTGATCTGGTGGAATTCCTTCTTTGTCCTGAATCTTC 23667
Query 20126 TGTTTCACCTGGCCAACAGAATCGCCAGGT-TCCGTTTCCACGGTAATGGTTTTGCCGGT 20184
|||||| | ||| | ||| | || | ||| ||| | ||||| || || |||||
Sbjct 23666 GCTTTCACGTTATCAATCGTATC-CGAGCTCTCCACTTCTAAAGTAATCGTCTTACCGGT 23608
Query 20185 CAACGTTTTGACAAAAATTTGCAT 20208
||| || ||||| || || |||||
Sbjct 23607 CAAAGTCTTGACGAAGATCTGCAT 23584
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 419435061746031
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |