Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Gossypium_20barbadense_20[genbank_20GCA_5F001856525.1_202016-11-03] 29,751 sequences; 2,566,742,836 total letters Query= NC_006966.1 Length=166259 Score E Sequences producing significant alignments: (Bits) Value seq28581 109 6e-19 seq22586 109 6e-19 seq29212 95.1 1e-14 >seq28581 Length=397638 Score = 109 bits (120), Expect = 6e-19 Identities = 301/458 (66%), Gaps = 24/458 (5%) Strand=Plus/Plus Query 21185 TTTTGATAATCACTAACTCTTTTTTCGAAAAAATTTGTCTTTCCTTCCAATGATATAGAT 21244 || ||||| || | |||||| || ||||| ||||| || || |||| |||||| || | Sbjct 33792 TTCTGATACTCTCCAACTCTCTTCTCGAAGAAATTGGTTTTCCCTTGCAATGAAATTAGT 33851 Query 21245 TCCATAAAATCAAATGGATTTTCAGATTTAAATATTTTATTACAACCCAGTTCTGATAAT 21304 ||||| ||||||| || || | | || | ||||| | | || | || ||| Sbjct 33852 TCCATCCAATCAAAAGGGTTAGCCGCATTGTACATTTTGCCATACCCTAAAGCTCCTAAC 33911 Query 21305 AATCTATCTGCTACAAATTCTATATATTGACACATTAATTCACAATTCATACCGATCAAT 21364 || | ||| || || || || || ||||||| ||| || |||| |||||| || | || Sbjct 33912 AACCGATCCGCAACGAACTCAATGTATTGACTCATCAACTCACCATTCATCCCAACTAAC 33971 Query 21365 TTTACAGGAAGAGCTTTTGTCAAAAAAGATTTTTCTATAGAGACGGCTTCA---ACAATT 21421 ||||||||| | | ||| | |||||| | || || ||| || ||| Sbjct 33972 GCGCAAGGAAGAGCGTCGCATACAAACTCCCTCTCTATATACACCGCATCACTCACTATT 34031 Query 21422 ATATTTA-------TTATCCTAGATGT-ACTAGGGGGATACAATAATTGTTTAAACATCA 21473 || | || | ||| | | ||| | ||| | | || || || Sbjct 34032 CCCTTCACGCGCTCTTCACTTAGCTTTGACT-GAAGGAGAGAGTA----------CAGCA 34080 Query 21474 AACATGCAAAATCACAATGCAAACCTTCATCCCTACTTATTAATTCATTAGAAAATGTTA 21533 | || ||||| || ||||| | ||||||||| | | || || || || || || |||| Sbjct 34081 AGCAAGCAAAGTCGCAATGGAGACCTTCATCTCGAGAGATCAACTCGTTTGAGAAAGTTA 34140 Query 21534 AACCGGGCATTAATCCTCTCTTTTTTAACCAAAATATTGACGCAAATGCT-CCTGAAAAG 21592 | || |||||||| || | |||||||||||||||||| | |||| | || || || || Sbjct 34141 ATCCAGGCATTAACCCGCGCTTTTTTAACCAAAATATCG-CGCAGAAACTGCCGGAGAAA 34199 Query 21593 AAAATGCCCTCAACGGCAGCAAATGCAACTAATCGTTC 21630 || ||||| || ||| ||| || || | ||| ||||| Sbjct 34200 AATATGCCTTCTACGCAAGCGAAAGCGATTAACCGTTC 34237 >seq22586 Length=877411 Score = 109 bits (120), Expect = 6e-19 Identities = 124/164 (76%), Gaps = 2/164 (1%) Strand=Plus/Plus Query 21468 ACATCAAACATGCAAAATCACAATGCAAACCTTCATCCCTACTTATTAATTCATTAGAAA 21527 ||| ||| || || |||||||| || | ||||||||| | ||||| || || || | Sbjct 443810 ACAGCAAGCAAGCGAAATCACAGTGGAGACCTTCATCTCGTGAGATTAACTCGTTTGAGA 443869 Query 21528 ATGTTAAACCGGGCATTAATCCTCTCTTTTTTAACCAAAATATTGACGCA-AATGCTCCT 21586 | ||||| ||||||||||| || ||||||||||||||||||| || | || || ||| Sbjct 443870 AAGTTAATCCGGGCATTAACCCCCTCTTTTTTAACCAAAATA-TGGCACAGAAACTTCCG 443928 Query 21587 GAAAAGAAAATGCCCTCAACGGCAGCAAATGCAACTAATCGTTC 21630 || || || || ||||| ||| |||||| || | ||| ||||| Sbjct 443929 GAGAAAAAGATCCCCTCTACGCAAGCAAAAGCGATTAACCGTTC 443972 Score = 109 bits (120), Expect = 6e-19 Identities = 124/164 (76%), Gaps = 2/164 (1%) Strand=Plus/Plus Query 21468 ACATCAAACATGCAAAATCACAATGCAAACCTTCATCCCTACTTATTAATTCATTAGAAA 21527 ||| ||| || || |||||||| || | ||||||||| | ||||| || || || | Sbjct 446945 ACAGCAAGCAAGCGAAATCACAGTGGAGACCTTCATCTCGTGAGATTAACTCGTTTGAGA 447004 Query 21528 ATGTTAAACCGGGCATTAATCCTCTCTTTTTTAACCAAAATATTGACGCA-AATGCTCCT 21586 | ||||| ||||||||||| || ||||||||||||||||||| || | || || ||| Sbjct 447005 AAGTTAATCCGGGCATTAACCCCCTCTTTTTTAACCAAAATA-TGGCACAGAAACTTCCG 447063 Query 21587 GAAAAGAAAATGCCCTCAACGGCAGCAAATGCAACTAATCGTTC 21630 || || || || ||||| ||| |||||| || | ||| ||||| Sbjct 447064 GAGAAAAAGATCCCCTCTACGCAAGCAAAAGCGATTAACCGTTC 447107 >seq29212 Length=358297 Score = 95.1 bits (104), Expect = 1e-14 Identities = 121/164 (74%), Gaps = 2/164 (1%) Strand=Plus/Minus Query 21468 ACATCAAACATGCAAAATCACAATGCAAACCTTCATCCCTACTTATTAATTCATTAGAAA 21527 ||| ||| || ||||| || ||||| | ||||||||| | | || || || || || | Sbjct 223231 ACAGCAAGCAAGCAAAGTCGCAATGGAGACCTTCATCTCGAGAGATCAACTCGTTTGAGA 223172 Query 21528 ATGTTAAACCGGGCATTAATCCTCTCTTTTTTAACCAAAATATTGACGCAAATGCT-CCT 21586 | ||||| || |||||||| || | |||||||||||||||||| | | || | || || Sbjct 223171 AAGTTAATCCAGGCATTAACCCGCGCTTTTTTAACCAAAATATCG-CACAGAAACTGCCG 223113 Query 21587 GAAAAGAAAATGCCCTCAACGGCAGCAAATGCAACTAATCGTTC 21630 || || || ||||| || ||| ||| || || | ||| ||||| Sbjct 223112 GAGAAAAATATGCCTTCTACGCAAGCGAAAGCGATTAACCGTTC 223069 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 531702992741240