Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Gossypium_20barbadense_20[genbank_20GCA_5F001856525.1_202016-11-03]
29,751 sequences; 2,566,742,836 total letters
Query= NC_006966.1
Length=166259
Score E
Sequences producing significant alignments: (Bits) Value
seq28581 109 6e-19
seq22586 109 6e-19
seq29212 95.1 1e-14
>seq28581
Length=397638
Score = 109 bits (120), Expect = 6e-19
Identities = 301/458 (66%), Gaps = 24/458 (5%)
Strand=Plus/Plus
Query 21185 TTTTGATAATCACTAACTCTTTTTTCGAAAAAATTTGTCTTTCCTTCCAATGATATAGAT 21244
|| ||||| || | |||||| || ||||| ||||| || || |||| |||||| || |
Sbjct 33792 TTCTGATACTCTCCAACTCTCTTCTCGAAGAAATTGGTTTTCCCTTGCAATGAAATTAGT 33851
Query 21245 TCCATAAAATCAAATGGATTTTCAGATTTAAATATTTTATTACAACCCAGTTCTGATAAT 21304
||||| ||||||| || || | | || | ||||| | | || | || |||
Sbjct 33852 TCCATCCAATCAAAAGGGTTAGCCGCATTGTACATTTTGCCATACCCTAAAGCTCCTAAC 33911
Query 21305 AATCTATCTGCTACAAATTCTATATATTGACACATTAATTCACAATTCATACCGATCAAT 21364
|| | ||| || || || || || ||||||| ||| || |||| |||||| || | ||
Sbjct 33912 AACCGATCCGCAACGAACTCAATGTATTGACTCATCAACTCACCATTCATCCCAACTAAC 33971
Query 21365 TTTACAGGAAGAGCTTTTGTCAAAAAAGATTTTTCTATAGAGACGGCTTCA---ACAATT 21421
||||||||| | | ||| | |||||| | || || ||| || |||
Sbjct 33972 GCGCAAGGAAGAGCGTCGCATACAAACTCCCTCTCTATATACACCGCATCACTCACTATT 34031
Query 21422 ATATTTA-------TTATCCTAGATGT-ACTAGGGGGATACAATAATTGTTTAAACATCA 21473
|| | || | ||| | | ||| | ||| | | || || ||
Sbjct 34032 CCCTTCACGCGCTCTTCACTTAGCTTTGACT-GAAGGAGAGAGTA----------CAGCA 34080
Query 21474 AACATGCAAAATCACAATGCAAACCTTCATCCCTACTTATTAATTCATTAGAAAATGTTA 21533
| || ||||| || ||||| | ||||||||| | | || || || || || || ||||
Sbjct 34081 AGCAAGCAAAGTCGCAATGGAGACCTTCATCTCGAGAGATCAACTCGTTTGAGAAAGTTA 34140
Query 21534 AACCGGGCATTAATCCTCTCTTTTTTAACCAAAATATTGACGCAAATGCT-CCTGAAAAG 21592
| || |||||||| || | |||||||||||||||||| | |||| | || || || ||
Sbjct 34141 ATCCAGGCATTAACCCGCGCTTTTTTAACCAAAATATCG-CGCAGAAACTGCCGGAGAAA 34199
Query 21593 AAAATGCCCTCAACGGCAGCAAATGCAACTAATCGTTC 21630
|| ||||| || ||| ||| || || | ||| |||||
Sbjct 34200 AATATGCCTTCTACGCAAGCGAAAGCGATTAACCGTTC 34237
>seq22586
Length=877411
Score = 109 bits (120), Expect = 6e-19
Identities = 124/164 (76%), Gaps = 2/164 (1%)
Strand=Plus/Plus
Query 21468 ACATCAAACATGCAAAATCACAATGCAAACCTTCATCCCTACTTATTAATTCATTAGAAA 21527
||| ||| || || |||||||| || | ||||||||| | ||||| || || || |
Sbjct 443810 ACAGCAAGCAAGCGAAATCACAGTGGAGACCTTCATCTCGTGAGATTAACTCGTTTGAGA 443869
Query 21528 ATGTTAAACCGGGCATTAATCCTCTCTTTTTTAACCAAAATATTGACGCA-AATGCTCCT 21586
| ||||| ||||||||||| || ||||||||||||||||||| || | || || |||
Sbjct 443870 AAGTTAATCCGGGCATTAACCCCCTCTTTTTTAACCAAAATA-TGGCACAGAAACTTCCG 443928
Query 21587 GAAAAGAAAATGCCCTCAACGGCAGCAAATGCAACTAATCGTTC 21630
|| || || || ||||| ||| |||||| || | ||| |||||
Sbjct 443929 GAGAAAAAGATCCCCTCTACGCAAGCAAAAGCGATTAACCGTTC 443972
Score = 109 bits (120), Expect = 6e-19
Identities = 124/164 (76%), Gaps = 2/164 (1%)
Strand=Plus/Plus
Query 21468 ACATCAAACATGCAAAATCACAATGCAAACCTTCATCCCTACTTATTAATTCATTAGAAA 21527
||| ||| || || |||||||| || | ||||||||| | ||||| || || || |
Sbjct 446945 ACAGCAAGCAAGCGAAATCACAGTGGAGACCTTCATCTCGTGAGATTAACTCGTTTGAGA 447004
Query 21528 ATGTTAAACCGGGCATTAATCCTCTCTTTTTTAACCAAAATATTGACGCA-AATGCTCCT 21586
| ||||| ||||||||||| || ||||||||||||||||||| || | || || |||
Sbjct 447005 AAGTTAATCCGGGCATTAACCCCCTCTTTTTTAACCAAAATA-TGGCACAGAAACTTCCG 447063
Query 21587 GAAAAGAAAATGCCCTCAACGGCAGCAAATGCAACTAATCGTTC 21630
|| || || || ||||| ||| |||||| || | ||| |||||
Sbjct 447064 GAGAAAAAGATCCCCTCTACGCAAGCAAAAGCGATTAACCGTTC 447107
>seq29212
Length=358297
Score = 95.1 bits (104), Expect = 1e-14
Identities = 121/164 (74%), Gaps = 2/164 (1%)
Strand=Plus/Minus
Query 21468 ACATCAAACATGCAAAATCACAATGCAAACCTTCATCCCTACTTATTAATTCATTAGAAA 21527
||| ||| || ||||| || ||||| | ||||||||| | | || || || || || |
Sbjct 223231 ACAGCAAGCAAGCAAAGTCGCAATGGAGACCTTCATCTCGAGAGATCAACTCGTTTGAGA 223172
Query 21528 ATGTTAAACCGGGCATTAATCCTCTCTTTTTTAACCAAAATATTGACGCAAATGCT-CCT 21586
| ||||| || |||||||| || | |||||||||||||||||| | | || | || ||
Sbjct 223171 AAGTTAATCCAGGCATTAACCCGCGCTTTTTTAACCAAAATATCG-CACAGAAACTGCCG 223113
Query 21587 GAAAAGAAAATGCCCTCAACGGCAGCAAATGCAACTAATCGTTC 21630
|| || || ||||| || ||| ||| || || | ||| |||||
Sbjct 223112 GAGAAAAATATGCCTTCTACGCAAGCGAAAGCGATTAACCGTTC 223069
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 531702992741240
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |