Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Gossypium_20barbadense_20[genbank_20GCA_5F001856525.1_202016-11-03]
29,751 sequences; 2,566,742,836 total letters
Query= NC_007346.1
Length=407339
Score E
Sequences producing significant alignments: (Bits) Value
seq29212 102 2e-16
seq28581 95.1 3e-14
seq19889 93.3 1e-13
seq22586 91.5 4e-13
seq26127 84.2 6e-11
seq8423 84.2 6e-11
>seq29212
Length=358297
Score = 102 bits (112), Expect = 2e-16
Identities = 342/520 (66%), Gaps = 17/520 (3%)
Strand=Plus/Plus
Query 22438 AATAAGGCAGATTGGGCGCTGAAATGGATGAACAATGAACGTTCATTCGCGGAACGTCTT 22497
|| || || |||||||| |||||||||| || | | || || ||||| |
Sbjct 223018 AAAAAAGCCGATTGGGCTTTGAAATGGATCGACGGCGGCGAAGCTTTTGCCGAACGGTTA 223077
Query 22498 ATTGCATTTGCTGTGGTTGAAGGCATTTTCTTTTCTGGAGCATTTTGTGCAATCTTTTGG 22557
|| || || ||| || |||||||| || || || || || ||||| || ||||||
Sbjct 223078 ATCGCTTTCGCTTGCGTAGAAGGCATATTTTTCTCCGGCAGTTTCTGTGCGATATTTTGG 223137
Query 22558 CTaaaaaaaCGTGCAATTATGCCGGGTCTAACGTTTTCAAATGAGTTAATTAGCCGAGAT 22617
||||||| || | | ||||| || |||| || ||||| ||||| || ||||||
Sbjct 223138 TTAAAAAAGCGCGGGTTAATGCCTGGATTAACTTTCTCAAACGAGTTGATCTCTCGAGAT 223197
Query 22618 GAGGGTCTTCATACCGATTTTGCGTGTATGCTATATCGGAATCATATCATTCATAAACTT 22677
|| ||||| ||| ||| ||||| || |||| || | || | || ||| || ||
Sbjct 223198 GAAGGTCTCCATTGCGACTTTGCTTGCTTGCTGTA-CTCTCTCCTC-CAGTCA-AAGCT- 223253
Query 22678 CCATATGAAACTGTACTTGAT----ATTATTACAAATGCAGTTGAACTTGAACGTCTATT 22733
| |||| | | ||| || | | |||| || || | || | ||
Sbjct 223254 --AAGTGAAGA-GCGCGTGAAGGGAATAGTGAGGGATGCGGTGGATATAGAGAGGGAGTT 223310
Query 22734 TATTTGCGAGGCG-TTACCAGTAAGTCTCATTGGTATCAATGCCGAATCAATGAGTACAT 22792
| | ||||| || || || | || | |||| || || | || | |||||| ||
Sbjct 223311 TGTATGCGACGCTCTTCCCTGCGCGT-TAGTTGGGATGAACGGTGAGTTGATGAGTCAAT 223369
Query 22793 ATATTAAATTTGTTGCAGATCGTCTATTAATTTCACTCGGTTATG-CAAAGCAT-TATAA 22850
| ||| | || ||||| ||||| | ||| | | || |||| |||| || || ||
Sbjct 223370 ACATTGAGTTCGTTGCGGATCGGTTGTTAGGAGCTTTAGGGTATGGCAAA--ATGTACAA 223427
Query 22851 CGTCGTTAATCCATTTGAATGGATGGAACTTATTTCACTTGAAGGAAAGACCAATTTCTT 22910
| | ||| || ||||| ||||||||||| |||||| | |||| || |||||||||||
Sbjct 223428 TGCGGCTAACCCTTTTGATTGGATGGAACTAATTTCATTGCAAGGGAAAACCAATTTCTT 223487
Query 22911 CGAAAAAAGAGTTGGTGAATACCAAAAAGCAGGTGTTATG 22950
||| || |||||||| || || || || |||| || |||
Sbjct 223488 CGAGAAGAGAGTTGGAGAGTATCAGAAGGCAGCGGTCATG 223527
>seq28581
Length=397638
Score = 95.1 bits (104), Expect = 3e-14
Identities = 180/259 (69%), Gaps = 7/259 (3%)
Strand=Plus/Minus
Query 22763 TTGGTATCAATGCCGAATCAATGAGTACATATATTAAATTTGTTGCAGATCGTCTATTAA 22822
|||| || |||| || | |||||| ||| ||| | || ||||| ||||| | |||
Sbjct 33966 TTGGGATGAATGGTGAGTTGATGAGTCAATACATTGAGTTCGTTGCGGATCGGTTGTTAG 33907
Query 22823 TTTCACTCGGTTATG-CAAAGCAT-TATAACGTCGTTAATCCATTTGAATGGATGGAACT 22880
| | || |||| |||| || || || | | ||| || ||||| |||||||||||
Sbjct 33906 GAGCTTTAGGGTATGGCAAA--ATGTACAATGCGGCTAACCCTTTTGATTGGATGGAACT 33849
Query 22881 TATTTCACTTGAAGGAAAGACCAATTTCTTCGAAAAAAGAGTTGGTGAATACCAAAAAGC 22940
|||||| | |||| || |||||||||||||| || |||||||| || || || || ||
Sbjct 33848 AATTTCATTGCAAGGGAAAACCAATTTCTTCGAGAAGAGAGTTGGAGAGTATCAGAAGGC 33789
Query 22941 AGGTGTTATGGATGCATTGAAT-GATAGTTCAAAA--CACGGATTTACATTAGATGAAGA 22997
|| || ||| |||||| || | ||| | || | ||| | | | ||||| ||
Sbjct 33788 AGCGGTCATGTCGAGTTTGAATGGAAATGACAAGACCCATGAATTCAAAATGGATGAGGA 33729
Query 22998 ATTTTAATTATTTGTATTT 23016
||||| ||||| | |||
Sbjct 33728 CTTTTAGGTATTTCTTTTT 33710
>seq19889
Length=234335
Score = 93.3 bits (102), Expect = 1e-13
Identities = 98/129 (76%), Gaps = 0/129 (0%)
Strand=Plus/Minus
Query 111696 ATGTGCCAGTTTTATGTACACGACGGGATGCTTTCATGCCAAATGTATCAGCGATCTGCT 111755
|||| ||||| |||||| | ||| | | | || ||||||||||||||||| ||||||
Sbjct 220720 ATGTTGCAGTTCTATGTAGCCAACGAGGAGTTATCTTGCCAAATGTATCAGCGTTCTGCT 220661
Query 111756 GATATTGGTCTTGGTGTTCCGTTTAATATTGCAAGTTACGCACTACTTACTTGCTTAATC 111815
||||| || | ||||| || ||||| |||||| ||| || || || || ||| | ||
Sbjct 220660 GATATGGGCTTGGGTGTGCCATTTAACATTGCATCTTATGCTCTCCTGACATGCATGATT 220601
Query 111816 GCTCATTTT 111824
|||||| ||
Sbjct 220600 GCTCATGTT 220592
>seq22586
Length=877411
Score = 91.5 bits (100), Expect = 4e-13
Identities = 127/178 (71%), Gaps = 0/178 (0%)
Strand=Plus/Minus
Query 22763 TTGGTATCAATGCCGAATCAATGAGTACATATATTAAATTTGTTGCAGATCGTCTATTAA 22822
|||| || || | ||| | ||||||| || || | || || || ||||| | ||
Sbjct 443701 TTGGGATGAACGGCGAGTTAATGAGTCAGTACATCGAGTTCGTAGCGGATCGGTTGTTGG 443642
Query 22823 TTTCACTCGGTTATGCAAAGCATTATAACGTCGTTAATCCATTTGAATGGATGGAACTTA 22882
| | || || | |||| || ||||| || || |||||||| ||||||||||| |
Sbjct 443641 GAGCGTTAGGGTACGGAAAGATGTACAACGTGGTCAACCCATTTGATTGGATGGAACTGA 443582
Query 22883 TTTCACTTGAAGGAAAGACCAATTTCTTCGAAAAAAGAGTTGGTGAATACCAAAAAGC 22940
| || | |||| || |||||||||||||| ||||||||||| || || ||||| ||
Sbjct 443581 TATCGTTGCAAGGGAAAACCAATTTCTTCGAGAAAAGAGTTGGAGAGTATCAAAAGGC 443524
Score = 91.5 bits (100), Expect = 4e-13
Identities = 127/178 (71%), Gaps = 0/178 (0%)
Strand=Plus/Minus
Query 22763 TTGGTATCAATGCCGAATCAATGAGTACATATATTAAATTTGTTGCAGATCGTCTATTAA 22822
|||| || || | ||| | ||||||| || || | || || || ||||| | ||
Sbjct 446836 TTGGGATGAACGGCGAGTTAATGAGTCAGTACATCGAGTTCGTAGCGGATCGGTTGTTGG 446777
Query 22823 TTTCACTCGGTTATGCAAAGCATTATAACGTCGTTAATCCATTTGAATGGATGGAACTTA 22882
| | || || | |||| || ||||| || || |||||||| ||||||||||| |
Sbjct 446776 GAGCGTTAGGGTACGGAAAGATGTACAACGTGGTCAACCCATTTGATTGGATGGAACTGA 446717
Query 22883 TTTCACTTGAAGGAAAGACCAATTTCTTCGAAAAAAGAGTTGGTGAATACCAAAAAGC 22940
| || | |||| || |||||||||||||| ||||||||||| || || ||||| ||
Sbjct 446716 TATCGTTGCAAGGGAAAACCAATTTCTTCGAGAAAAGAGTTGGAGAGTATCAAAAGGC 446659
>seq26127
Length=392893
Score = 84.2 bits (92), Expect = 6e-11
Identities = 96/129 (74%), Gaps = 0/129 (0%)
Strand=Plus/Plus
Query 111696 ATGTGCCAGTTTTATGTACACGACGGGATGCTTTCATGCCAAATGTATCAGCGATCTGCT 111755
|||| ||||| ||||| | | | | | | || ||||||||||||||||| ||||||
Sbjct 306890 ATGTTGCAGTTCTATGTTGCCAATGAGGAGTTATCTTGCCAAATGTATCAGCGTTCTGCT 306949
Query 111756 GATATTGGTCTTGGTGTTCCGTTTAATATTGCAAGTTACGCACTACTTACTTGCTTAATC 111815
||||| || | ||||| || ||||| |||||| ||| || || || || ||| | ||
Sbjct 306950 GATATGGGCTTGGGTGTGCCATTTAACATTGCATCTTATGCTCTCCTGACATGCATGATT 307009
Query 111816 GCTCATTTT 111824
|||||| ||
Sbjct 307010 GCTCATGTT 307018
>seq8423
Length=362193
Score = 84.2 bits (92), Expect = 6e-11
Identities = 96/129 (74%), Gaps = 0/129 (0%)
Strand=Plus/Plus
Query 111696 ATGTGCCAGTTTTATGTACACGACGGGATGCTTTCATGCCAAATGTATCAGCGATCTGCT 111755
|||| ||||| ||||| | | | | | | || ||||||||||||||||| ||||||
Sbjct 60964 ATGTTGCAGTTCTATGTTGCCAATGAGGAGTTATCTTGCCAAATGTATCAGCGTTCTGCT 61023
Query 111756 GATATTGGTCTTGGTGTTCCGTTTAATATTGCAAGTTACGCACTACTTACTTGCTTAATC 111815
||||| || | ||||| || ||||| |||||| ||| || || || || ||| | ||
Sbjct 61024 GATATGGGCTTGGGTGTGCCATTTAACATTGCATCTTATGCTCTTCTGACATGCATGATT 61083
Query 111816 GCTCATTTT 111824
|||||| ||
Sbjct 61084 GCTCATGTT 61092
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 1302856781565282
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |