Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Gossypium_20barbadense_20[genbank_20GCA_5F001856525.1_202016-11-03] 29,751 sequences; 2,566,742,836 total letters Query= NC_007346.1 Length=407339 Score E Sequences producing significant alignments: (Bits) Value seq29212 102 2e-16 seq28581 95.1 3e-14 seq19889 93.3 1e-13 seq22586 91.5 4e-13 seq26127 84.2 6e-11 seq8423 84.2 6e-11 >seq29212 Length=358297 Score = 102 bits (112), Expect = 2e-16 Identities = 342/520 (66%), Gaps = 17/520 (3%) Strand=Plus/Plus Query 22438 AATAAGGCAGATTGGGCGCTGAAATGGATGAACAATGAACGTTCATTCGCGGAACGTCTT 22497 || || || |||||||| |||||||||| || | | || || ||||| | Sbjct 223018 AAAAAAGCCGATTGGGCTTTGAAATGGATCGACGGCGGCGAAGCTTTTGCCGAACGGTTA 223077 Query 22498 ATTGCATTTGCTGTGGTTGAAGGCATTTTCTTTTCTGGAGCATTTTGTGCAATCTTTTGG 22557 || || || ||| || |||||||| || || || || || ||||| || |||||| Sbjct 223078 ATCGCTTTCGCTTGCGTAGAAGGCATATTTTTCTCCGGCAGTTTCTGTGCGATATTTTGG 223137 Query 22558 CTaaaaaaaCGTGCAATTATGCCGGGTCTAACGTTTTCAAATGAGTTAATTAGCCGAGAT 22617 ||||||| || | | ||||| || |||| || ||||| ||||| || |||||| Sbjct 223138 TTAAAAAAGCGCGGGTTAATGCCTGGATTAACTTTCTCAAACGAGTTGATCTCTCGAGAT 223197 Query 22618 GAGGGTCTTCATACCGATTTTGCGTGTATGCTATATCGGAATCATATCATTCATAAACTT 22677 || ||||| ||| ||| ||||| || |||| || | || | || ||| || || Sbjct 223198 GAAGGTCTCCATTGCGACTTTGCTTGCTTGCTGTA-CTCTCTCCTC-CAGTCA-AAGCT- 223253 Query 22678 CCATATGAAACTGTACTTGAT----ATTATTACAAATGCAGTTGAACTTGAACGTCTATT 22733 | |||| | | ||| || | | |||| || || | || | || Sbjct 223254 --AAGTGAAGA-GCGCGTGAAGGGAATAGTGAGGGATGCGGTGGATATAGAGAGGGAGTT 223310 Query 22734 TATTTGCGAGGCG-TTACCAGTAAGTCTCATTGGTATCAATGCCGAATCAATGAGTACAT 22792 | | ||||| || || || | || | |||| || || | || | |||||| || Sbjct 223311 TGTATGCGACGCTCTTCCCTGCGCGT-TAGTTGGGATGAACGGTGAGTTGATGAGTCAAT 223369 Query 22793 ATATTAAATTTGTTGCAGATCGTCTATTAATTTCACTCGGTTATG-CAAAGCAT-TATAA 22850 | ||| | || ||||| ||||| | ||| | | || |||| |||| || || || Sbjct 223370 ACATTGAGTTCGTTGCGGATCGGTTGTTAGGAGCTTTAGGGTATGGCAAA--ATGTACAA 223427 Query 22851 CGTCGTTAATCCATTTGAATGGATGGAACTTATTTCACTTGAAGGAAAGACCAATTTCTT 22910 | | ||| || ||||| ||||||||||| |||||| | |||| || ||||||||||| Sbjct 223428 TGCGGCTAACCCTTTTGATTGGATGGAACTAATTTCATTGCAAGGGAAAACCAATTTCTT 223487 Query 22911 CGAAAAAAGAGTTGGTGAATACCAAAAAGCAGGTGTTATG 22950 ||| || |||||||| || || || || |||| || ||| Sbjct 223488 CGAGAAGAGAGTTGGAGAGTATCAGAAGGCAGCGGTCATG 223527 >seq28581 Length=397638 Score = 95.1 bits (104), Expect = 3e-14 Identities = 180/259 (69%), Gaps = 7/259 (3%) Strand=Plus/Minus Query 22763 TTGGTATCAATGCCGAATCAATGAGTACATATATTAAATTTGTTGCAGATCGTCTATTAA 22822 |||| || |||| || | |||||| ||| ||| | || ||||| ||||| | ||| Sbjct 33966 TTGGGATGAATGGTGAGTTGATGAGTCAATACATTGAGTTCGTTGCGGATCGGTTGTTAG 33907 Query 22823 TTTCACTCGGTTATG-CAAAGCAT-TATAACGTCGTTAATCCATTTGAATGGATGGAACT 22880 | | || |||| |||| || || || | | ||| || ||||| ||||||||||| Sbjct 33906 GAGCTTTAGGGTATGGCAAA--ATGTACAATGCGGCTAACCCTTTTGATTGGATGGAACT 33849 Query 22881 TATTTCACTTGAAGGAAAGACCAATTTCTTCGAAAAAAGAGTTGGTGAATACCAAAAAGC 22940 |||||| | |||| || |||||||||||||| || |||||||| || || || || || Sbjct 33848 AATTTCATTGCAAGGGAAAACCAATTTCTTCGAGAAGAGAGTTGGAGAGTATCAGAAGGC 33789 Query 22941 AGGTGTTATGGATGCATTGAAT-GATAGTTCAAAA--CACGGATTTACATTAGATGAAGA 22997 || || ||| |||||| || | ||| | || | ||| | | | ||||| || Sbjct 33788 AGCGGTCATGTCGAGTTTGAATGGAAATGACAAGACCCATGAATTCAAAATGGATGAGGA 33729 Query 22998 ATTTTAATTATTTGTATTT 23016 ||||| ||||| | ||| Sbjct 33728 CTTTTAGGTATTTCTTTTT 33710 >seq19889 Length=234335 Score = 93.3 bits (102), Expect = 1e-13 Identities = 98/129 (76%), Gaps = 0/129 (0%) Strand=Plus/Minus Query 111696 ATGTGCCAGTTTTATGTACACGACGGGATGCTTTCATGCCAAATGTATCAGCGATCTGCT 111755 |||| ||||| |||||| | ||| | | | || ||||||||||||||||| |||||| Sbjct 220720 ATGTTGCAGTTCTATGTAGCCAACGAGGAGTTATCTTGCCAAATGTATCAGCGTTCTGCT 220661 Query 111756 GATATTGGTCTTGGTGTTCCGTTTAATATTGCAAGTTACGCACTACTTACTTGCTTAATC 111815 ||||| || | ||||| || ||||| |||||| ||| || || || || ||| | || Sbjct 220660 GATATGGGCTTGGGTGTGCCATTTAACATTGCATCTTATGCTCTCCTGACATGCATGATT 220601 Query 111816 GCTCATTTT 111824 |||||| || Sbjct 220600 GCTCATGTT 220592 >seq22586 Length=877411 Score = 91.5 bits (100), Expect = 4e-13 Identities = 127/178 (71%), Gaps = 0/178 (0%) Strand=Plus/Minus Query 22763 TTGGTATCAATGCCGAATCAATGAGTACATATATTAAATTTGTTGCAGATCGTCTATTAA 22822 |||| || || | ||| | ||||||| || || | || || || ||||| | || Sbjct 443701 TTGGGATGAACGGCGAGTTAATGAGTCAGTACATCGAGTTCGTAGCGGATCGGTTGTTGG 443642 Query 22823 TTTCACTCGGTTATGCAAAGCATTATAACGTCGTTAATCCATTTGAATGGATGGAACTTA 22882 | | || || | |||| || ||||| || || |||||||| ||||||||||| | Sbjct 443641 GAGCGTTAGGGTACGGAAAGATGTACAACGTGGTCAACCCATTTGATTGGATGGAACTGA 443582 Query 22883 TTTCACTTGAAGGAAAGACCAATTTCTTCGAAAAAAGAGTTGGTGAATACCAAAAAGC 22940 | || | |||| || |||||||||||||| ||||||||||| || || ||||| || Sbjct 443581 TATCGTTGCAAGGGAAAACCAATTTCTTCGAGAAAAGAGTTGGAGAGTATCAAAAGGC 443524 Score = 91.5 bits (100), Expect = 4e-13 Identities = 127/178 (71%), Gaps = 0/178 (0%) Strand=Plus/Minus Query 22763 TTGGTATCAATGCCGAATCAATGAGTACATATATTAAATTTGTTGCAGATCGTCTATTAA 22822 |||| || || | ||| | ||||||| || || | || || || ||||| | || Sbjct 446836 TTGGGATGAACGGCGAGTTAATGAGTCAGTACATCGAGTTCGTAGCGGATCGGTTGTTGG 446777 Query 22823 TTTCACTCGGTTATGCAAAGCATTATAACGTCGTTAATCCATTTGAATGGATGGAACTTA 22882 | | || || | |||| || ||||| || || |||||||| ||||||||||| | Sbjct 446776 GAGCGTTAGGGTACGGAAAGATGTACAACGTGGTCAACCCATTTGATTGGATGGAACTGA 446717 Query 22883 TTTCACTTGAAGGAAAGACCAATTTCTTCGAAAAAAGAGTTGGTGAATACCAAAAAGC 22940 | || | |||| || |||||||||||||| ||||||||||| || || ||||| || Sbjct 446716 TATCGTTGCAAGGGAAAACCAATTTCTTCGAGAAAAGAGTTGGAGAGTATCAAAAGGC 446659 >seq26127 Length=392893 Score = 84.2 bits (92), Expect = 6e-11 Identities = 96/129 (74%), Gaps = 0/129 (0%) Strand=Plus/Plus Query 111696 ATGTGCCAGTTTTATGTACACGACGGGATGCTTTCATGCCAAATGTATCAGCGATCTGCT 111755 |||| ||||| ||||| | | | | | | || ||||||||||||||||| |||||| Sbjct 306890 ATGTTGCAGTTCTATGTTGCCAATGAGGAGTTATCTTGCCAAATGTATCAGCGTTCTGCT 306949 Query 111756 GATATTGGTCTTGGTGTTCCGTTTAATATTGCAAGTTACGCACTACTTACTTGCTTAATC 111815 ||||| || | ||||| || ||||| |||||| ||| || || || || ||| | || Sbjct 306950 GATATGGGCTTGGGTGTGCCATTTAACATTGCATCTTATGCTCTCCTGACATGCATGATT 307009 Query 111816 GCTCATTTT 111824 |||||| || Sbjct 307010 GCTCATGTT 307018 >seq8423 Length=362193 Score = 84.2 bits (92), Expect = 6e-11 Identities = 96/129 (74%), Gaps = 0/129 (0%) Strand=Plus/Plus Query 111696 ATGTGCCAGTTTTATGTACACGACGGGATGCTTTCATGCCAAATGTATCAGCGATCTGCT 111755 |||| ||||| ||||| | | | | | | || ||||||||||||||||| |||||| Sbjct 60964 ATGTTGCAGTTCTATGTTGCCAATGAGGAGTTATCTTGCCAAATGTATCAGCGTTCTGCT 61023 Query 111756 GATATTGGTCTTGGTGTTCCGTTTAATATTGCAAGTTACGCACTACTTACTTGCTTAATC 111815 ||||| || | ||||| || ||||| |||||| ||| || || || || ||| | || Sbjct 61024 GATATGGGCTTGGGTGTGCCATTTAACATTGCATCTTATGCTCTTCTGACATGCATGATT 61083 Query 111816 GCTCATTTT 111824 |||||| || Sbjct 61084 GCTCATGTT 61092 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1302856781565282