Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Gossypium_20barbadense_20[genbank_20GCA_5F001856525.1_202016-11-03] 29,751 sequences; 2,566,742,836 total letters Query= NC_008291.1 Length=198050 Score E Sequences producing significant alignments: (Bits) Value seq29212 150 2e-31 seq22586 141 1e-28 seq25332 109 7e-19 seq19704 105 8e-18 seq8664 96.9 4e-15 seq28581 91.5 2e-13 seq12755 91.5 2e-13 >seq29212 Length=358297 Score = 150 bits (166), Expect = 2e-31 Identities = 391/587 (67%), Gaps = 8/587 (1%) Strand=Plus/Minus Query 32653 ACATCAAACATGCGAAATCGCAGTGTAGACCCTCGTCTCTACTAATTAATTCGTTGGAAA 32712 ||| ||| || || || ||||| || ||||| || |||| | || || ||||| || | Sbjct 223231 ACAGCAAGCAAGCAAAGTCGCAATGGAGACCTTCATCTCGAGAGATCAACTCGTTTGAGA 223172 Query 32713 ACGTGAGTCCGGGCATTAGGCCACGCTTTTTAAGCCAAAATATGG-ACGCAAA-TGATCC 32770 | || | ||| ||||||| || |||||||| | ||||||||| | || ||| || || Sbjct 223171 AAGTTAATCCAGGCATTAACCCGCGCTTTTTTAACCAAAATATCGCACAGAAACTG--CC 223114 Query 32771 AGAAAAGAAAATTCCTTCTACTGCCGCAAAGGCAATAAGTCTCTCTCCATAACCGGCGCT 32830 || || || || |||||||| || || || || | | || || || | ||| Sbjct 223113 GGAGAAAAATATGCCTTCTACGCAAGCGAAAGCGATTAACCGTTCGGCAAAAGCTTCGCC 223054 Query 32831 GTCATGTATCCACTTTTGAGCCCAATCGGCCTTCTTTTTTACACAAGGCATTGTCTCTAT 32890 | | | ||||| || |||||||||||| || || || || |||| || || | Sbjct 223053 GCCGTCGATCCATTTCAAAGCCCAATCGGCTTTTTTAGCCACGCACGGCACCGTTTCAGT 222994 Query 32891 AGCATTAAAGAGATAGtttttttCATTACTATCTTTAACATATGTATCAATCAAAAGACT 32950 ||| | ||||| ||||||||| | |||||||| ||| || || | | ||||| Sbjct 222993 AGCGTGGAAGAGGCGGTTTTTTTCGGTGGAATCTTTAATATAAGTTTCGAGGAGGAGACT 222934 Query 32951 ATACATTTCCGAATGAATGTTTTCAATGGCCATTTGAAATCCGTAGAA-GCATCTAGCCT 33009 |||||| || || || || || || ||||| ||||| ||||| || || ||| | |||| Sbjct 222933 ATACATCTCAGAGTGGATATTCTCGATGGCGATTTGGAATCCATAAAATGCA-CGCGCCT 222875 Query 33010 CGGTAATCTGTACTTCTGTACAAAATCGTTCTGCTAAATTTTCATTCACTATTCCGTCAC 33069 | | || || || ||| | || || | || | |||||| || || || || Sbjct 222874 CCGCGATTTGGACCTCTTTCATGAAGCGAACAGCGAGATTTTCTAGAACGATGCCATCGG 222815 Query 33070 TGGCTGCAAAAAACGCCAATACATGTTTTATAAAATATTTTTCGTCTGGTGTT-AGTTTA 33128 || || || || || | ||||| | || || | |||||| || ||| || || Sbjct 222814 ATGCGGCGAAGAAGGCAAGGACATGACTGATGAAGTGGCGTTCGTC-GGCGTTAAGATTT 222756 Query 33129 TTCCAATCATTGATATCTTTAGATATATCCACTTCTTCCACTGTCCAAAATGATGCCTCT 33188 | ||| | | ||| ||| | ||| ||||| || | |||||||| || || || Sbjct 222755 TGCCAGTGTGGAAGATCGGAAGAGAGATCAACTTCCTCGGCAGTCCAAAAAGAGGCTTCG 222696 Query 33189 GCCTTTTTATACATATTCCAGATGTCATGATATTGAATTGGAAAAAT 33235 || || |||||||| | ||| || | | ||||| ||||| || || Sbjct 222695 GCTTTCTTATACATTTCCCATATCTGTGGGTATTGGATTGGGAACAT 222649 >seq22586 Length=877411 Score = 141 bits (156), Expect = 1e-28 Identities = 386/586 (66%), Gaps = 4/586 (1%) Strand=Plus/Plus Query 32653 ACATCAAACATGCGAAATCGCAGTGTAGACCCTCGTCTCTACTAATTAATTCGTTGGAAA 32712 ||| ||| || |||||||| ||||| ||||| || |||| ||||| ||||| || | Sbjct 443810 ACAGCAAGCAAGCGAAATCACAGTGGAGACCTTCATCTCGTGAGATTAACTCGTTTGAGA 443869 Query 32713 ACGTGAGTCCGGGCATTAGGCCACGCTTTTTAAGCCAAAATATGGACGCA-AATGATCCA 32771 | || | ||||||||||| || | |||||| | ||||||||||| | || || ||| Sbjct 443870 AAGTTAATCCGGGCATTAACCCCCTCTTTTTTAACCAAAATATGG-CACAGAAACTTCCG 443928 Query 32772 GAAAAGAAAATTCCTTCTACTGCCGCAAAGGCAATAAGTCTCTCTCCATAACCGGCGCTG 32831 || || || || || ||||| ||||| || || | | || | || | | | Sbjct 443929 GAGAAAAAGATCCCCTCTACGCAAGCAAAAGCGATTAACCGTTCGGCGAAAGTTTCTCCG 443988 Query 32832 TCATGTATCCACTTTTGAGCCCAATCGGCCTTCTTTTTTACACAAGGCATTGTCTCTATA 32891 | | ||||| || |||||| ||||| || || ||||| |||| ||||| || Sbjct 443989 CCGTCGATCCATTTCATAGCCCACTCGGCTTTTTTAGCCACACACGGCACCGTCTCGATG 444048 Query 32892 GCATTAAAGAGATAGtttttttCATTACTATCTTTAACATATGTATCAATCAAAAGACTA 32951 || || ||| ||| ||||||| |||||| | || || || | | ||||| Sbjct 444049 GCGCGGAAAAGACGGTTCTTTTCATCGGAATCTTTTATGTAAGTCTCGAGAAGGAGACTG 444108 Query 32952 TACATTTCCGAATGAATGTTTTCAATGGCCATTTGAAATCCGT-AGAAGCATCTAGCCTC 33010 ||||| || || || || ||||| || || ||||| || || | | ||||| | ||||| Sbjct 444109 TACATCTCGGAGTGGATATTTTCGATAGCGATTTGGAAACCATAAAAAGCA-CGCGCCTC 444167 Query 33011 GGTAATCTGTACTTCTGTACAAAATCGTTCTGCTAAATTTTCATTCACTATTCCGTCACT 33070 || ||||| || ||| | || || | || | || ||| ||||| || || Sbjct 444168 GGAGATCTGGACCTCTTTCATGAACCGAACAGCAAGGTTCTCAAGGACTATGCCATCGGA 444227 Query 33071 GGCTGCAAAAAACGCCAATACATGTTTTATAAAATATTTTTCGTCTGGTGTTAGTTTATT 33130 ||| || ||||| || | || || | || || | | || || | || || | | Sbjct 444228 GGCGGCGAAAAAGGCGAGAACGTGACTAATGAAGTGATGCTCATCGGCGGTGAGAGTTTC 444287 Query 33131 CCAATCATTGATATCTTTAGATATATCCACTTCTTCCACTGTCCAAAATGATGCCTCTGC 33190 ||| | | | ||| ||| | ||| ||||| || | |||||||| || || || || Sbjct 444288 CCAGTGACGAAGATCGGAAGACAGATCGACTTCCTCTGCGGTCCAAAACGACGCTTCGGC 444347 Query 33191 CTTTTTATACATATTCCAGATGTCATGATATTGAATTGGAAAAATA 33236 || || ||||| | ||| | || | ||||| || ||||| ||| Sbjct 444348 TTTCTTGTACATTTCCCATACTTCTGGGTATTGGATCGGAAACATA 444393 Score = 141 bits (156), Expect = 1e-28 Identities = 386/586 (66%), Gaps = 4/586 (1%) Strand=Plus/Plus Query 32653 ACATCAAACATGCGAAATCGCAGTGTAGACCCTCGTCTCTACTAATTAATTCGTTGGAAA 32712 ||| ||| || |||||||| ||||| ||||| || |||| ||||| ||||| || | Sbjct 446945 ACAGCAAGCAAGCGAAATCACAGTGGAGACCTTCATCTCGTGAGATTAACTCGTTTGAGA 447004 Query 32713 ACGTGAGTCCGGGCATTAGGCCACGCTTTTTAAGCCAAAATATGGACGCA-AATGATCCA 32771 | || | ||||||||||| || | |||||| | ||||||||||| | || || ||| Sbjct 447005 AAGTTAATCCGGGCATTAACCCCCTCTTTTTTAACCAAAATATGG-CACAGAAACTTCCG 447063 Query 32772 GAAAAGAAAATTCCTTCTACTGCCGCAAAGGCAATAAGTCTCTCTCCATAACCGGCGCTG 32831 || || || || || ||||| ||||| || || | | || | || | | | Sbjct 447064 GAGAAAAAGATCCCCTCTACGCAAGCAAAAGCGATTAACCGTTCGGCGAAAGTTTCTCCG 447123 Query 32832 TCATGTATCCACTTTTGAGCCCAATCGGCCTTCTTTTTTACACAAGGCATTGTCTCTATA 32891 | | ||||| || |||||| ||||| || || ||||| |||| ||||| || Sbjct 447124 CCGTCGATCCATTTCATAGCCCACTCGGCTTTTTTAGCCACACACGGCACCGTCTCGATG 447183 Query 32892 GCATTAAAGAGATAGtttttttCATTACTATCTTTAACATATGTATCAATCAAAAGACTA 32951 || || ||| ||| ||||||| |||||| | || || || | | ||||| Sbjct 447184 GCGCGGAAAAGACGGTTCTTTTCATCGGAATCTTTTATGTAAGTCTCGAGAAGGAGACTG 447243 Query 32952 TACATTTCCGAATGAATGTTTTCAATGGCCATTTGAAATCCGT-AGAAGCATCTAGCCTC 33010 ||||| || || || || ||||| || || ||||| || || | | ||||| | ||||| Sbjct 447244 TACATCTCGGAGTGGATATTTTCGATAGCGATTTGGAAACCATAAAAAGCA-CGCGCCTC 447302 Query 33011 GGTAATCTGTACTTCTGTACAAAATCGTTCTGCTAAATTTTCATTCACTATTCCGTCACT 33070 || ||||| || ||| | || || | || | || ||| ||||| || || Sbjct 447303 GGAGATCTGGACCTCTTTCATGAACCGAACAGCAAGGTTCTCAAGGACTATGCCATCGGA 447362 Query 33071 GGCTGCAAAAAACGCCAATACATGTTTTATAAAATATTTTTCGTCTGGTGTTAGTTTATT 33130 ||| || ||||| || | || || | || || | | || || | || || | | Sbjct 447363 GGCGGCGAAAAAGGCGAGAACGTGACTAATGAAGTGATGCTCATCGGCGGTGAGAGTTTC 447422 Query 33131 CCAATCATTGATATCTTTAGATATATCCACTTCTTCCACTGTCCAAAATGATGCCTCTGC 33190 ||| | | | ||| ||| | ||| ||||| || | |||||||| || || || || Sbjct 447423 CCAGTGACGAAGATCGGAAGACAGATCGACTTCCTCTGCGGTCCAAAACGACGCTTCGGC 447482 Query 33191 CTTTTTATACATATTCCAGATGTCATGATATTGAATTGGAAAAATA 33236 || || ||||| | ||| | || | ||||| || ||||| ||| Sbjct 447483 TTTCTTGTACATTTCCCATACTTCTGGGTATTGGATCGGAAACATA 447528 >seq25332 Length=434290 Score = 109 bits (120), Expect = 7e-19 Identities = 161/228 (71%), Gaps = 0/228 (0%) Strand=Plus/Plus Query 63466 AGTTCCCGCATTAAATAAGGTAGGAGAAGCGTGAGTAAACCATTTTTCAGAAAGTAGATT 63525 |||||| ||||| || | || |||||||| |||||||||||| ||| ||| | | | Sbjct 185741 AGTTCCAGCATTGAAAAGTGTGGGAGAAGCATGAGTAAACCATCTTTGAGACATCATGTG 185800 Query 63526 GTACGTCTCAATAGCTGAGTCTATATCCCATTGATGAATTCCTACTGCGACACGCATTAA 63585 || || | ||||| || || || || | ||||||||| ||||| || | |||||| Sbjct 185801 ATAAGTTTTTATAGCAGAATCAATGTCATTCTTATGAATTCCAACTGCAACCCTCATTAA 185860 Query 63586 CATGTGCTGAGGTCTTTCAACGATCTTGTTGTTTATTTTCAACAAGTAGGATTTTTCCAA 63645 |||||| || || ||||| | | ||| | | |||||| | |||||| | || | Sbjct 185861 CATGTGTTGGGGCCTTTCTATAACCTTCCCTTGAACTTTCAAGAGGTAGGACCTCTCAAG 185920 Query 63646 AGTTTTAAAACCAAAATAGTTGTATGAAAAGTCTCGTTCGTAAATAAT 63693 ||||| ||||||||||| | || |||||| || || || || || Sbjct 185921 GGTTTTGAAACCAAAATAATCATAGTCAAAGTCCCGATCATATATGAT 185968 Score = 84.2 bits (92), Expect = 3e-11 Identities = 151/221 (68%), Gaps = 0/221 (0%) Strand=Plus/Plus Query 63227 CCTCCCTGATCTATGTATCTAGCGGTGTTATTATAAACTCTCAACATTGGAATAATACCA 63286 ||||| ||||| | || | ||| |||| ||| | || | || |||||| | ||| ||| Sbjct 185398 CCTCCTTGATCAACATAACGAGCAGTGTCATTGAACACCCGCAGCATTGGGACAATGCCA 185457 Query 63287 TTGGATGTACCATTGGTCCCTGAGATATAGCTTCCACTGGCACGAATATTACTAATTGAT 63346 || ||||||||||| || || || || || | | || |||||||| || ||| Sbjct 185458 TTAGATGTACCATTTGTTCCACGAATGTAACTACTTGTAGCCCGAATATTGTGAACTGAG 185517 Query 63347 AGACCTATTCCCCCTGCCATTTTAGAGATTAATGCGCATCGTTTTAACGTATCATAGATG 63406 | ||| ||||| || || ||| ||| | || || || || || ||||| || Sbjct 185518 ACACCAATTCCTCCAGCTGATTTGCTGATAATAGCACACTCCTTCAAAGTGTCATATATT 185577 Query 63407 CCCTCTATACTATCATCCATCATGTTAAGTAGAAAACAGCT 63447 ||||| ||||| ||||| |||| |||| ||| ||||| Sbjct 185578 CCCTCAATACTGTCATCTTTCATACACAGTAAAAAGCAGCT 185618 >seq19704 Length=164701 Score = 105 bits (116), Expect = 8e-18 Identities = 160/228 (70%), Gaps = 0/228 (0%) Strand=Plus/Minus Query 63466 AGTTCCCGCATTAAATAAGGTAGGAGAAGCGTGAGTAAACCATTTTTCAGAAAGTAGATT 63525 |||||| ||||| || | || |||||||| |||||||||||| ||| ||| | | | Sbjct 135482 AGTTCCAGCATTGAAAAGTGTGGGAGAAGCATGAGTAAACCATCTTTGAGACATCATGTG 135423 Query 63526 GTACGTCTCAATAGCTGAGTCTATATCCCATTGATGAATTCCTACTGCGACACGCATTAA 63585 || || | ||||| || || || || | ||||||||| ||||| || | |||||| Sbjct 135422 ATAAGTTTTTATAGCAGAATCAATGTCATTCTTATGAATTCCAACTGCAACCCTCATTAA 135363 Query 63586 CATGTGCTGAGGTCTTTCAACGATCTTGTTGTTTATTTTCAACAAGTAGGATTTTTCCAA 63645 |||||| || || ||||| | | ||| | | ||| || | |||||| | || | Sbjct 135362 CATGTGTTGGGGCCTTTCTATAACCTTCCCTTGAACTTTTAAGAGGTAGGACCTCTCAAG 135303 Query 63646 AGTTTTAAAACCAAAATAGTTGTATGAAAAGTCTCGTTCGTAAATAAT 63693 ||||| ||||||||||| | || |||||| || || || || || Sbjct 135302 GGTTTTGAAACCAAAATAATCATAGTCAAAGTCCCGATCATATATGAT 135255 Score = 96.9 bits (106), Expect = 4e-15 Identities = 156/222 (70%), Gaps = 2/222 (1%) Strand=Plus/Minus Query 63227 CCTCCCTGATCTATGTATCTAGCGGTGTTATTATAAACTCTCAACATTGGAATAATACCA 63286 ||||| ||||| | || | ||| |||| ||| | || | || |||||| | ||| ||| Sbjct 135825 CCTCCTTGATCAACATAACGAGCAGTGTCATTGAACACCCGCAGCATTGGGACAATGCCA 135766 Query 63287 TTGGATGTACCATTGGTCCC-TGAGATATAGCTTCCACTGGCACGAATATTACTAATTGA 63345 || ||||||||||| || || ||| || || || | | || |||||||| || ||| Sbjct 135765 TTAGATGTACCATTTGTTCCATGA-ATGTAACTACTTGTAGCCCGAATATTGTGAACTGA 135707 Query 63346 TAGACCTATTCCCCCTGCCATTTTAGAGATTAATGCGCATCGTTTTAACGTATCATAGAT 63405 | ||| ||||| || || ||| ||||| || || || || || ||||| || Sbjct 135706 GACACCAATTCCTCCAGCTGATTTGCTGATTATAGCACACTCCTTCAAAGTGTCATATAT 135647 Query 63406 GCCCTCTATACTATCATCCATCATGTTAAGTAGAAAACAGCT 63447 ||||| ||||||||||| |||| |||| ||| ||||| Sbjct 135646 TCCCTCAATACTATCATCTTTCATACACAGTAAAAAGCAGCT 135605 >seq8664 Length=49552 Score = 96.9 bits (106), Expect = 4e-15 Identities = 158/228 (69%), Gaps = 0/228 (0%) Strand=Plus/Minus Query 63466 AGTTCCCGCATTAAATAAGGTAGGAGAAGCGTGAGTAAACCATTTTTCAGAAAGTAGATT 63525 ||| || ||||| || | || |||||||| ||||| |||||| ||| ||| | | | Sbjct 49323 AGTCCCAGCATTGAAAAGAGTGGGAGAAGCATGAGTGAACCATCTTTGAGACATCATGTG 49264 Query 63526 GTACGTCTCAATAGCTGAGTCTATATCCCATTGATGAATTCCTACTGCGACACGCATTAA 63585 || || | ||||| || || || || | ||||||||| || || || | |||||| Sbjct 49263 ATAAGTTTTTATAGCAGAATCAATGTCATCCTTATGAATTCCAACAGCAACCCTCATTAA 49204 Query 63586 CATGTGCTGAGGTCTTTCAACGATCTTGTTGTTTATTTTCAACAAGTAGGATTTTTCCAA 63645 |||||||||||| ||||| | | ||| | | |||||| | || || | |||| Sbjct 49203 CATGTGCTGAGGCCTTTCTATAACCTTCCCTTGAACTTTCAAGAGATAAGACCTCTCCAG 49144 Query 63646 AGTTTTAAAACCAAAATAGTTGTATGAAAAGTCTCGTTCGTAAATAAT 63693 ||||| || ||||| || | ||| |||||| || || || || || Sbjct 49143 GGTTTTGAAGCCAAAGTAATCGTAGTCAAAGTCACGATCATATATGAT 49096 >seq28581 Length=397638 Score = 91.5 bits (100), Expect = 2e-13 Identities = 194/287 (68%), Gaps = 2/287 (1%) Strand=Plus/Plus Query 32653 ACATCAAACATGCGAAATCGCAGTGTAGACCCTCGTCTCTACTAATTAATTCGTTGGAAA 32712 ||| ||| || || || ||||| || ||||| || |||| | || || ||||| || | Sbjct 34075 ACAGCAAGCAAGCAAAGTCGCAATGGAGACCTTCATCTCGAGAGATCAACTCGTTTGAGA 34134 Query 32713 ACGTGAGTCCGGGCATTAGGCCACGCTTTTTAAGCCAAAATATGGACGCAAATGAT-CCA 32771 | || | ||| ||||||| || |||||||| | ||||||||| | |||| | | || Sbjct 34135 AAGTTAATCCAGGCATTAACCCGCGCTTTTTTAACCAAAATATCG-CGCAGAAACTGCCG 34193 Query 32772 GAAAAGAAAATTCCTTCTACTGCCGCAAAGGCAATAAGTCTCTCTCCATAACCGGCGCTG 32831 || || || || |||||||| || || || || | | || || || | ||| | Sbjct 34194 GAGAAAAATATGCCTTCTACGCAAGCGAAAGCGATTAACCGTTCGGCAAAAGCTTCGCGG 34253 Query 32832 TCATGTATCCACTTTTGAGCCCAATCGGCCTTCTTTTTTACACAAGGCATTGTCTCTATA 32891 | | ||||| || |||||||||||| || || || || |||| || || || Sbjct 34254 CCGTCGATCCATTTGAAAGCCCAATCGGCTTTTTTAGCCACGCACGGCACCGTTTCAGTA 34313 Query 32892 GCATTAAAGAGATAGtttttttCATTACTATCTTTAACATATGTATC 32938 || | ||||| ||||||||| | |||||| | ||| || || Sbjct 34314 GCGTGGAAGAGGCGGTTTTTTTCGGTGGAATCTTTGATATAAGTTTC 34360 >seq12755 Length=243795 Score = 91.5 bits (100), Expect = 2e-13 Identities = 143/205 (70%), Gaps = 0/205 (0%) Strand=Plus/Minus Query 63226 TCCTCCCTGATCTATGTATCTAGCGGTGTTATTATAAACTCTCAACATTGGAATAATACC 63285 |||||| ||||| | |||| ||| || | ||| | || | || |||||| | ||| || Sbjct 40245 TCCTCCTTGATCAACATATCGAGCAGTATCATTGAACACCCGCAGCATTGGGACAATTCC 40186 Query 63286 ATTGGATGTACCATTGGTCCCTGAGATATAGCTTCCACTGGCACGAATATTACTAATTGA 63345 ||| ||||||||||| || || ||||| || || |||| |||||||| || || Sbjct 40185 ATTAGATGTACCATTTGTTCCACGAATATAACTACCTGTGGCTCGAATATTGTGAACAGA 40126 Query 63346 TAGACCTATTCCCCCTGCCATTTTAGAGATTAATGCGCATCGTTTTAACGTATCATAGAT 63405 | ||| ||||| || || ||| ||| | || || || || || ||||| || Sbjct 40125 AACACCAATTCCTCCAGCTGATTTGCTGATAACAGCACACTCCTTCAAAGTTTCATATAT 40066 Query 63406 GCCCTCTATACTATCATCCATCATG 63430 || || ||||||||||| ||||| Sbjct 40065 TCCTTCAATACTATCATCTTTCATG 40041 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 633396360179600