Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Gossypium_20barbadense_20[genbank_20GCA_5F001856525.1_202016-11-03]
29,751 sequences; 2,566,742,836 total letters
Query= NC_008291.1
Length=198050
Score E
Sequences producing significant alignments: (Bits) Value
seq29212 150 2e-31
seq22586 141 1e-28
seq25332 109 7e-19
seq19704 105 8e-18
seq8664 96.9 4e-15
seq28581 91.5 2e-13
seq12755 91.5 2e-13
>seq29212
Length=358297
Score = 150 bits (166), Expect = 2e-31
Identities = 391/587 (67%), Gaps = 8/587 (1%)
Strand=Plus/Minus
Query 32653 ACATCAAACATGCGAAATCGCAGTGTAGACCCTCGTCTCTACTAATTAATTCGTTGGAAA 32712
||| ||| || || || ||||| || ||||| || |||| | || || ||||| || |
Sbjct 223231 ACAGCAAGCAAGCAAAGTCGCAATGGAGACCTTCATCTCGAGAGATCAACTCGTTTGAGA 223172
Query 32713 ACGTGAGTCCGGGCATTAGGCCACGCTTTTTAAGCCAAAATATGG-ACGCAAA-TGATCC 32770
| || | ||| ||||||| || |||||||| | ||||||||| | || ||| || ||
Sbjct 223171 AAGTTAATCCAGGCATTAACCCGCGCTTTTTTAACCAAAATATCGCACAGAAACTG--CC 223114
Query 32771 AGAAAAGAAAATTCCTTCTACTGCCGCAAAGGCAATAAGTCTCTCTCCATAACCGGCGCT 32830
|| || || || |||||||| || || || || | | || || || | |||
Sbjct 223113 GGAGAAAAATATGCCTTCTACGCAAGCGAAAGCGATTAACCGTTCGGCAAAAGCTTCGCC 223054
Query 32831 GTCATGTATCCACTTTTGAGCCCAATCGGCCTTCTTTTTTACACAAGGCATTGTCTCTAT 32890
| | | ||||| || |||||||||||| || || || || |||| || || |
Sbjct 223053 GCCGTCGATCCATTTCAAAGCCCAATCGGCTTTTTTAGCCACGCACGGCACCGTTTCAGT 222994
Query 32891 AGCATTAAAGAGATAGtttttttCATTACTATCTTTAACATATGTATCAATCAAAAGACT 32950
||| | ||||| ||||||||| | |||||||| ||| || || | | |||||
Sbjct 222993 AGCGTGGAAGAGGCGGTTTTTTTCGGTGGAATCTTTAATATAAGTTTCGAGGAGGAGACT 222934
Query 32951 ATACATTTCCGAATGAATGTTTTCAATGGCCATTTGAAATCCGTAGAA-GCATCTAGCCT 33009
|||||| || || || || || || ||||| ||||| ||||| || || ||| | ||||
Sbjct 222933 ATACATCTCAGAGTGGATATTCTCGATGGCGATTTGGAATCCATAAAATGCA-CGCGCCT 222875
Query 33010 CGGTAATCTGTACTTCTGTACAAAATCGTTCTGCTAAATTTTCATTCACTATTCCGTCAC 33069
| | || || || ||| | || || | || | |||||| || || || ||
Sbjct 222874 CCGCGATTTGGACCTCTTTCATGAAGCGAACAGCGAGATTTTCTAGAACGATGCCATCGG 222815
Query 33070 TGGCTGCAAAAAACGCCAATACATGTTTTATAAAATATTTTTCGTCTGGTGTT-AGTTTA 33128
|| || || || || | ||||| | || || | |||||| || ||| || ||
Sbjct 222814 ATGCGGCGAAGAAGGCAAGGACATGACTGATGAAGTGGCGTTCGTC-GGCGTTAAGATTT 222756
Query 33129 TTCCAATCATTGATATCTTTAGATATATCCACTTCTTCCACTGTCCAAAATGATGCCTCT 33188
| ||| | | ||| ||| | ||| ||||| || | |||||||| || || ||
Sbjct 222755 TGCCAGTGTGGAAGATCGGAAGAGAGATCAACTTCCTCGGCAGTCCAAAAAGAGGCTTCG 222696
Query 33189 GCCTTTTTATACATATTCCAGATGTCATGATATTGAATTGGAAAAAT 33235
|| || |||||||| | ||| || | | ||||| ||||| || ||
Sbjct 222695 GCTTTCTTATACATTTCCCATATCTGTGGGTATTGGATTGGGAACAT 222649
>seq22586
Length=877411
Score = 141 bits (156), Expect = 1e-28
Identities = 386/586 (66%), Gaps = 4/586 (1%)
Strand=Plus/Plus
Query 32653 ACATCAAACATGCGAAATCGCAGTGTAGACCCTCGTCTCTACTAATTAATTCGTTGGAAA 32712
||| ||| || |||||||| ||||| ||||| || |||| ||||| ||||| || |
Sbjct 443810 ACAGCAAGCAAGCGAAATCACAGTGGAGACCTTCATCTCGTGAGATTAACTCGTTTGAGA 443869
Query 32713 ACGTGAGTCCGGGCATTAGGCCACGCTTTTTAAGCCAAAATATGGACGCA-AATGATCCA 32771
| || | ||||||||||| || | |||||| | ||||||||||| | || || |||
Sbjct 443870 AAGTTAATCCGGGCATTAACCCCCTCTTTTTTAACCAAAATATGG-CACAGAAACTTCCG 443928
Query 32772 GAAAAGAAAATTCCTTCTACTGCCGCAAAGGCAATAAGTCTCTCTCCATAACCGGCGCTG 32831
|| || || || || ||||| ||||| || || | | || | || | | |
Sbjct 443929 GAGAAAAAGATCCCCTCTACGCAAGCAAAAGCGATTAACCGTTCGGCGAAAGTTTCTCCG 443988
Query 32832 TCATGTATCCACTTTTGAGCCCAATCGGCCTTCTTTTTTACACAAGGCATTGTCTCTATA 32891
| | ||||| || |||||| ||||| || || ||||| |||| ||||| ||
Sbjct 443989 CCGTCGATCCATTTCATAGCCCACTCGGCTTTTTTAGCCACACACGGCACCGTCTCGATG 444048
Query 32892 GCATTAAAGAGATAGtttttttCATTACTATCTTTAACATATGTATCAATCAAAAGACTA 32951
|| || ||| ||| ||||||| |||||| | || || || | | |||||
Sbjct 444049 GCGCGGAAAAGACGGTTCTTTTCATCGGAATCTTTTATGTAAGTCTCGAGAAGGAGACTG 444108
Query 32952 TACATTTCCGAATGAATGTTTTCAATGGCCATTTGAAATCCGT-AGAAGCATCTAGCCTC 33010
||||| || || || || ||||| || || ||||| || || | | ||||| | |||||
Sbjct 444109 TACATCTCGGAGTGGATATTTTCGATAGCGATTTGGAAACCATAAAAAGCA-CGCGCCTC 444167
Query 33011 GGTAATCTGTACTTCTGTACAAAATCGTTCTGCTAAATTTTCATTCACTATTCCGTCACT 33070
|| ||||| || ||| | || || | || | || ||| ||||| || ||
Sbjct 444168 GGAGATCTGGACCTCTTTCATGAACCGAACAGCAAGGTTCTCAAGGACTATGCCATCGGA 444227
Query 33071 GGCTGCAAAAAACGCCAATACATGTTTTATAAAATATTTTTCGTCTGGTGTTAGTTTATT 33130
||| || ||||| || | || || | || || | | || || | || || | |
Sbjct 444228 GGCGGCGAAAAAGGCGAGAACGTGACTAATGAAGTGATGCTCATCGGCGGTGAGAGTTTC 444287
Query 33131 CCAATCATTGATATCTTTAGATATATCCACTTCTTCCACTGTCCAAAATGATGCCTCTGC 33190
||| | | | ||| ||| | ||| ||||| || | |||||||| || || || ||
Sbjct 444288 CCAGTGACGAAGATCGGAAGACAGATCGACTTCCTCTGCGGTCCAAAACGACGCTTCGGC 444347
Query 33191 CTTTTTATACATATTCCAGATGTCATGATATTGAATTGGAAAAATA 33236
|| || ||||| | ||| | || | ||||| || ||||| |||
Sbjct 444348 TTTCTTGTACATTTCCCATACTTCTGGGTATTGGATCGGAAACATA 444393
Score = 141 bits (156), Expect = 1e-28
Identities = 386/586 (66%), Gaps = 4/586 (1%)
Strand=Plus/Plus
Query 32653 ACATCAAACATGCGAAATCGCAGTGTAGACCCTCGTCTCTACTAATTAATTCGTTGGAAA 32712
||| ||| || |||||||| ||||| ||||| || |||| ||||| ||||| || |
Sbjct 446945 ACAGCAAGCAAGCGAAATCACAGTGGAGACCTTCATCTCGTGAGATTAACTCGTTTGAGA 447004
Query 32713 ACGTGAGTCCGGGCATTAGGCCACGCTTTTTAAGCCAAAATATGGACGCA-AATGATCCA 32771
| || | ||||||||||| || | |||||| | ||||||||||| | || || |||
Sbjct 447005 AAGTTAATCCGGGCATTAACCCCCTCTTTTTTAACCAAAATATGG-CACAGAAACTTCCG 447063
Query 32772 GAAAAGAAAATTCCTTCTACTGCCGCAAAGGCAATAAGTCTCTCTCCATAACCGGCGCTG 32831
|| || || || || ||||| ||||| || || | | || | || | | |
Sbjct 447064 GAGAAAAAGATCCCCTCTACGCAAGCAAAAGCGATTAACCGTTCGGCGAAAGTTTCTCCG 447123
Query 32832 TCATGTATCCACTTTTGAGCCCAATCGGCCTTCTTTTTTACACAAGGCATTGTCTCTATA 32891
| | ||||| || |||||| ||||| || || ||||| |||| ||||| ||
Sbjct 447124 CCGTCGATCCATTTCATAGCCCACTCGGCTTTTTTAGCCACACACGGCACCGTCTCGATG 447183
Query 32892 GCATTAAAGAGATAGtttttttCATTACTATCTTTAACATATGTATCAATCAAAAGACTA 32951
|| || ||| ||| ||||||| |||||| | || || || | | |||||
Sbjct 447184 GCGCGGAAAAGACGGTTCTTTTCATCGGAATCTTTTATGTAAGTCTCGAGAAGGAGACTG 447243
Query 32952 TACATTTCCGAATGAATGTTTTCAATGGCCATTTGAAATCCGT-AGAAGCATCTAGCCTC 33010
||||| || || || || ||||| || || ||||| || || | | ||||| | |||||
Sbjct 447244 TACATCTCGGAGTGGATATTTTCGATAGCGATTTGGAAACCATAAAAAGCA-CGCGCCTC 447302
Query 33011 GGTAATCTGTACTTCTGTACAAAATCGTTCTGCTAAATTTTCATTCACTATTCCGTCACT 33070
|| ||||| || ||| | || || | || | || ||| ||||| || ||
Sbjct 447303 GGAGATCTGGACCTCTTTCATGAACCGAACAGCAAGGTTCTCAAGGACTATGCCATCGGA 447362
Query 33071 GGCTGCAAAAAACGCCAATACATGTTTTATAAAATATTTTTCGTCTGGTGTTAGTTTATT 33130
||| || ||||| || | || || | || || | | || || | || || | |
Sbjct 447363 GGCGGCGAAAAAGGCGAGAACGTGACTAATGAAGTGATGCTCATCGGCGGTGAGAGTTTC 447422
Query 33131 CCAATCATTGATATCTTTAGATATATCCACTTCTTCCACTGTCCAAAATGATGCCTCTGC 33190
||| | | | ||| ||| | ||| ||||| || | |||||||| || || || ||
Sbjct 447423 CCAGTGACGAAGATCGGAAGACAGATCGACTTCCTCTGCGGTCCAAAACGACGCTTCGGC 447482
Query 33191 CTTTTTATACATATTCCAGATGTCATGATATTGAATTGGAAAAATA 33236
|| || ||||| | ||| | || | ||||| || ||||| |||
Sbjct 447483 TTTCTTGTACATTTCCCATACTTCTGGGTATTGGATCGGAAACATA 447528
>seq25332
Length=434290
Score = 109 bits (120), Expect = 7e-19
Identities = 161/228 (71%), Gaps = 0/228 (0%)
Strand=Plus/Plus
Query 63466 AGTTCCCGCATTAAATAAGGTAGGAGAAGCGTGAGTAAACCATTTTTCAGAAAGTAGATT 63525
|||||| ||||| || | || |||||||| |||||||||||| ||| ||| | | |
Sbjct 185741 AGTTCCAGCATTGAAAAGTGTGGGAGAAGCATGAGTAAACCATCTTTGAGACATCATGTG 185800
Query 63526 GTACGTCTCAATAGCTGAGTCTATATCCCATTGATGAATTCCTACTGCGACACGCATTAA 63585
|| || | ||||| || || || || | ||||||||| ||||| || | ||||||
Sbjct 185801 ATAAGTTTTTATAGCAGAATCAATGTCATTCTTATGAATTCCAACTGCAACCCTCATTAA 185860
Query 63586 CATGTGCTGAGGTCTTTCAACGATCTTGTTGTTTATTTTCAACAAGTAGGATTTTTCCAA 63645
|||||| || || ||||| | | ||| | | |||||| | |||||| | || |
Sbjct 185861 CATGTGTTGGGGCCTTTCTATAACCTTCCCTTGAACTTTCAAGAGGTAGGACCTCTCAAG 185920
Query 63646 AGTTTTAAAACCAAAATAGTTGTATGAAAAGTCTCGTTCGTAAATAAT 63693
||||| ||||||||||| | || |||||| || || || || ||
Sbjct 185921 GGTTTTGAAACCAAAATAATCATAGTCAAAGTCCCGATCATATATGAT 185968
Score = 84.2 bits (92), Expect = 3e-11
Identities = 151/221 (68%), Gaps = 0/221 (0%)
Strand=Plus/Plus
Query 63227 CCTCCCTGATCTATGTATCTAGCGGTGTTATTATAAACTCTCAACATTGGAATAATACCA 63286
||||| ||||| | || | ||| |||| ||| | || | || |||||| | ||| |||
Sbjct 185398 CCTCCTTGATCAACATAACGAGCAGTGTCATTGAACACCCGCAGCATTGGGACAATGCCA 185457
Query 63287 TTGGATGTACCATTGGTCCCTGAGATATAGCTTCCACTGGCACGAATATTACTAATTGAT 63346
|| ||||||||||| || || || || || | | || |||||||| || |||
Sbjct 185458 TTAGATGTACCATTTGTTCCACGAATGTAACTACTTGTAGCCCGAATATTGTGAACTGAG 185517
Query 63347 AGACCTATTCCCCCTGCCATTTTAGAGATTAATGCGCATCGTTTTAACGTATCATAGATG 63406
| ||| ||||| || || ||| ||| | || || || || || ||||| ||
Sbjct 185518 ACACCAATTCCTCCAGCTGATTTGCTGATAATAGCACACTCCTTCAAAGTGTCATATATT 185577
Query 63407 CCCTCTATACTATCATCCATCATGTTAAGTAGAAAACAGCT 63447
||||| ||||| ||||| |||| |||| ||| |||||
Sbjct 185578 CCCTCAATACTGTCATCTTTCATACACAGTAAAAAGCAGCT 185618
>seq19704
Length=164701
Score = 105 bits (116), Expect = 8e-18
Identities = 160/228 (70%), Gaps = 0/228 (0%)
Strand=Plus/Minus
Query 63466 AGTTCCCGCATTAAATAAGGTAGGAGAAGCGTGAGTAAACCATTTTTCAGAAAGTAGATT 63525
|||||| ||||| || | || |||||||| |||||||||||| ||| ||| | | |
Sbjct 135482 AGTTCCAGCATTGAAAAGTGTGGGAGAAGCATGAGTAAACCATCTTTGAGACATCATGTG 135423
Query 63526 GTACGTCTCAATAGCTGAGTCTATATCCCATTGATGAATTCCTACTGCGACACGCATTAA 63585
|| || | ||||| || || || || | ||||||||| ||||| || | ||||||
Sbjct 135422 ATAAGTTTTTATAGCAGAATCAATGTCATTCTTATGAATTCCAACTGCAACCCTCATTAA 135363
Query 63586 CATGTGCTGAGGTCTTTCAACGATCTTGTTGTTTATTTTCAACAAGTAGGATTTTTCCAA 63645
|||||| || || ||||| | | ||| | | ||| || | |||||| | || |
Sbjct 135362 CATGTGTTGGGGCCTTTCTATAACCTTCCCTTGAACTTTTAAGAGGTAGGACCTCTCAAG 135303
Query 63646 AGTTTTAAAACCAAAATAGTTGTATGAAAAGTCTCGTTCGTAAATAAT 63693
||||| ||||||||||| | || |||||| || || || || ||
Sbjct 135302 GGTTTTGAAACCAAAATAATCATAGTCAAAGTCCCGATCATATATGAT 135255
Score = 96.9 bits (106), Expect = 4e-15
Identities = 156/222 (70%), Gaps = 2/222 (1%)
Strand=Plus/Minus
Query 63227 CCTCCCTGATCTATGTATCTAGCGGTGTTATTATAAACTCTCAACATTGGAATAATACCA 63286
||||| ||||| | || | ||| |||| ||| | || | || |||||| | ||| |||
Sbjct 135825 CCTCCTTGATCAACATAACGAGCAGTGTCATTGAACACCCGCAGCATTGGGACAATGCCA 135766
Query 63287 TTGGATGTACCATTGGTCCC-TGAGATATAGCTTCCACTGGCACGAATATTACTAATTGA 63345
|| ||||||||||| || || ||| || || || | | || |||||||| || |||
Sbjct 135765 TTAGATGTACCATTTGTTCCATGA-ATGTAACTACTTGTAGCCCGAATATTGTGAACTGA 135707
Query 63346 TAGACCTATTCCCCCTGCCATTTTAGAGATTAATGCGCATCGTTTTAACGTATCATAGAT 63405
| ||| ||||| || || ||| ||||| || || || || || ||||| ||
Sbjct 135706 GACACCAATTCCTCCAGCTGATTTGCTGATTATAGCACACTCCTTCAAAGTGTCATATAT 135647
Query 63406 GCCCTCTATACTATCATCCATCATGTTAAGTAGAAAACAGCT 63447
||||| ||||||||||| |||| |||| ||| |||||
Sbjct 135646 TCCCTCAATACTATCATCTTTCATACACAGTAAAAAGCAGCT 135605
>seq8664
Length=49552
Score = 96.9 bits (106), Expect = 4e-15
Identities = 158/228 (69%), Gaps = 0/228 (0%)
Strand=Plus/Minus
Query 63466 AGTTCCCGCATTAAATAAGGTAGGAGAAGCGTGAGTAAACCATTTTTCAGAAAGTAGATT 63525
||| || ||||| || | || |||||||| ||||| |||||| ||| ||| | | |
Sbjct 49323 AGTCCCAGCATTGAAAAGAGTGGGAGAAGCATGAGTGAACCATCTTTGAGACATCATGTG 49264
Query 63526 GTACGTCTCAATAGCTGAGTCTATATCCCATTGATGAATTCCTACTGCGACACGCATTAA 63585
|| || | ||||| || || || || | ||||||||| || || || | ||||||
Sbjct 49263 ATAAGTTTTTATAGCAGAATCAATGTCATCCTTATGAATTCCAACAGCAACCCTCATTAA 49204
Query 63586 CATGTGCTGAGGTCTTTCAACGATCTTGTTGTTTATTTTCAACAAGTAGGATTTTTCCAA 63645
|||||||||||| ||||| | | ||| | | |||||| | || || | ||||
Sbjct 49203 CATGTGCTGAGGCCTTTCTATAACCTTCCCTTGAACTTTCAAGAGATAAGACCTCTCCAG 49144
Query 63646 AGTTTTAAAACCAAAATAGTTGTATGAAAAGTCTCGTTCGTAAATAAT 63693
||||| || ||||| || | ||| |||||| || || || || ||
Sbjct 49143 GGTTTTGAAGCCAAAGTAATCGTAGTCAAAGTCACGATCATATATGAT 49096
>seq28581
Length=397638
Score = 91.5 bits (100), Expect = 2e-13
Identities = 194/287 (68%), Gaps = 2/287 (1%)
Strand=Plus/Plus
Query 32653 ACATCAAACATGCGAAATCGCAGTGTAGACCCTCGTCTCTACTAATTAATTCGTTGGAAA 32712
||| ||| || || || ||||| || ||||| || |||| | || || ||||| || |
Sbjct 34075 ACAGCAAGCAAGCAAAGTCGCAATGGAGACCTTCATCTCGAGAGATCAACTCGTTTGAGA 34134
Query 32713 ACGTGAGTCCGGGCATTAGGCCACGCTTTTTAAGCCAAAATATGGACGCAAATGAT-CCA 32771
| || | ||| ||||||| || |||||||| | ||||||||| | |||| | | ||
Sbjct 34135 AAGTTAATCCAGGCATTAACCCGCGCTTTTTTAACCAAAATATCG-CGCAGAAACTGCCG 34193
Query 32772 GAAAAGAAAATTCCTTCTACTGCCGCAAAGGCAATAAGTCTCTCTCCATAACCGGCGCTG 32831
|| || || || |||||||| || || || || | | || || || | ||| |
Sbjct 34194 GAGAAAAATATGCCTTCTACGCAAGCGAAAGCGATTAACCGTTCGGCAAAAGCTTCGCGG 34253
Query 32832 TCATGTATCCACTTTTGAGCCCAATCGGCCTTCTTTTTTACACAAGGCATTGTCTCTATA 32891
| | ||||| || |||||||||||| || || || || |||| || || ||
Sbjct 34254 CCGTCGATCCATTTGAAAGCCCAATCGGCTTTTTTAGCCACGCACGGCACCGTTTCAGTA 34313
Query 32892 GCATTAAAGAGATAGtttttttCATTACTATCTTTAACATATGTATC 32938
|| | ||||| ||||||||| | |||||| | ||| || ||
Sbjct 34314 GCGTGGAAGAGGCGGTTTTTTTCGGTGGAATCTTTGATATAAGTTTC 34360
>seq12755
Length=243795
Score = 91.5 bits (100), Expect = 2e-13
Identities = 143/205 (70%), Gaps = 0/205 (0%)
Strand=Plus/Minus
Query 63226 TCCTCCCTGATCTATGTATCTAGCGGTGTTATTATAAACTCTCAACATTGGAATAATACC 63285
|||||| ||||| | |||| ||| || | ||| | || | || |||||| | ||| ||
Sbjct 40245 TCCTCCTTGATCAACATATCGAGCAGTATCATTGAACACCCGCAGCATTGGGACAATTCC 40186
Query 63286 ATTGGATGTACCATTGGTCCCTGAGATATAGCTTCCACTGGCACGAATATTACTAATTGA 63345
||| ||||||||||| || || ||||| || || |||| |||||||| || ||
Sbjct 40185 ATTAGATGTACCATTTGTTCCACGAATATAACTACCTGTGGCTCGAATATTGTGAACAGA 40126
Query 63346 TAGACCTATTCCCCCTGCCATTTTAGAGATTAATGCGCATCGTTTTAACGTATCATAGAT 63405
| ||| ||||| || || ||| ||| | || || || || || ||||| ||
Sbjct 40125 AACACCAATTCCTCCAGCTGATTTGCTGATAACAGCACACTCCTTCAAAGTTTCATATAT 40066
Query 63406 GCCCTCTATACTATCATCCATCATG 63430
|| || ||||||||||| |||||
Sbjct 40065 TCCTTCAATACTATCATCTTTCATG 40041
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 633396360179600
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