Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Gossypium_20barbadense_20[genbank_20GCA_5F001856525.1_202016-11-03] 29,751 sequences; 2,566,742,836 total letters Query= NC_008725.1 Length=111953 Score E Sequences producing significant alignments: (Bits) Value seq12924 91.5 1e-13 seq14353 87.8 1e-12 seq9953 86.0 4e-12 seq481 84.2 2e-11 seq10219 82.4 5e-11 >seq12924 Length=310248 Score = 91.5 bits (100), Expect = 1e-13 Identities = 142/203 (70%), Gaps = 0/203 (0%) Strand=Plus/Plus Query 21834 ATGCAAATATTTATTAAAACATTAACGGGCAAAACCATTACCGTGGAAACGGAAGCCGCA 21893 ||||| |||||| | ||||| | |||||||| ||||| ||| | || |||| | Sbjct 59582 ATGCAGATATTTGTGAAAACCCTTACGGGCAAGACCATCACCCTCGAGGTGGAAAGTTCT 59641 Query 21894 GAAACGGTGGCCGATCTTAAGCAAAAAATTGCCGATAAAGAGGGTGTACCTGTAAACCAA 21953 || ||| | | || | ||| || || || || || || | ||| || ||||| Sbjct 59642 GATACGATTGATAATGTCAAGGCCAAGATCCAAGACAAGGAAGGGATCCCTCTAGACCAA 59701 Query 21954 CAGAGACTTATCTTTGCTGGCAAACAACTAGAAGATTTAAAAACTATGGCCGATTACAAT 22013 ||||| ||||||||||| || |||||||| |||||| ||| | || |||||||| Sbjct 59702 CAGAGGCTTATCTTTGCAGGTAAACAACTTGAAGATGGCCGAACCCTCGCTGATTACAAC 59761 Query 22014 ATTCAGAAGGAATCTACTCTTCA 22036 || ||||| || ||||| || || Sbjct 59762 ATCCAGAAAGAGTCTACCCTCCA 59784 Score = 82.4 bits (90), Expect = 5e-11 Identities = 141/205 (69%), Gaps = 0/205 (0%) Strand=Plus/Plus Query 21833 AATGCAAATATTTATTAAAACATTAACGGGCAAAACCATTACCGTGGAAACGGAAGCCGC 21892 |||||| ||||| | || || || || || |||||||| ||| |||| ||| | | Sbjct 60721 AATGCAGATATTCGTGAAGACCTTGACTGGGAAAACCATCACCCTGGAGGTGGAGAGCTC 60780 Query 21893 AGAAACGGTGGCCGATCTTAAGCAAAAAATTGCCGATAAAGAGGGTGTACCTGTAAACCA 21952 || ||| | | | || | || || ||| || || ||||| | ||| |||| Sbjct 60781 GGACACGATTGACAATGTGAAATCTAAGATTCAGGACAAGGAGGGGATTCCTCCGGACCA 60840 Query 21953 ACAGAGACTTATCTTTGCTGGCAAACAACTAGAAGATTTAAAAACTATGGCCGATTACAA 22012 ||||| | ||||||||||| || || | || ||| |||| | || || ||||| Sbjct 60841 GCAGAGGTTGATCTTTGCTGGAAAGCAGTTGGAGGATGGTCGAACTTTAGCAGACTACAA 60900 Query 22013 TATTCAGAAGGAATCTACTCTTCAT 22037 ||||||||||||||| ||||| ||| Sbjct 60901 TATTCAGAAGGAATCCACTCTGCAT 60925 >seq14353 Length=57137 Score = 87.8 bits (96), Expect = 1e-12 Identities = 156/228 (68%), Gaps = 0/228 (0%) Strand=Plus/Plus Query 21834 ATGCAAATATTTATTAAAACATTAACGGGCAAAACCATTACCGTGGAAACGGAAGCCGCA 21893 |||||||| ||| |||| || | || ||||| || || ||| | || |||| | | Sbjct 31925 ATGCAAATCTTTGTTAAGACCCTCACCGGCAAGACTATCACCCTCGAGGTGGAAAGCTCG 31984 Query 21894 GAAACGGTGGCCGATCTTAAGCAAAAAATTGCCGATAAAGAGGGTGTACCTGTAAACCAA 21953 || || | | || | ||| || || || ||||| || | ||| | |||| Sbjct 31985 GACACCATTGATAATGTCAAGGCCAAGATCCAAGACAAAGAAGGGATCCCTCCAGACCAG 32044 Query 21954 CAGAGACTTATCTTTGCTGGCAAACAACTAGAAGATTTAAAAACTATGGCCGATTACAAT 22013 ||||||||||||||||| || || |||||||||||| || |||| |||||||| Sbjct 32045 CAGAGACTTATCTTTGCCGGTAAGCAACTAGAAGATGGCCGTACCCTGGCTGATTACAAC 32104 Query 22014 ATTCAGAAGGAATCTACTCTTCATATGGTATTACGTTTACGAGGAGGA 22061 || || ||||| || || || ||| |||| | || | || |||||| Sbjct 32105 ATCCAAAAGGAGTCCACCCTCCATTTGGTGCTCCGCCTTCGTGGAGGA 32152 Score = 82.4 bits (90), Expect = 5e-11 Identities = 140/203 (69%), Gaps = 0/203 (0%) Strand=Plus/Plus Query 21834 ATGCAAATATTTATTAAAACATTAACGGGCAAAACCATTACCGTGGAAACGGAAGCCGCA 21893 |||||||||||| | ||||| | || ||||| || || ||| | ||| |||| | | Sbjct 54651 ATGCAAATATTTGTCAAAACCCTTACTGGCAAGACAATCACCCTTGAAGTGGAAAGCTCC 54710 Query 21894 GAAACGGTGGCCGATCTTAAGCAAAAAATTGCCGATAAAGAGGGTGTACCTGTAAACCAA 21953 || || | | || | ||| || || || ||||| ||| | ||| ||||| Sbjct 54711 GACACAATTGATAATGTCAAGGCCAAGATCCAAGACAAAGAAGGTATCCCTCCTGACCAA 54770 Query 21954 CAGAGACTTATCTTTGCTGGCAAACAACTAGAAGATTTAAAAACTATGGCCGATTACAAT 22013 ||||| |||||||||||||| |||||||| || ||| || | || || ||||| Sbjct 54771 CAGAGGCTTATCTTTGCTGGTAAACAACTGGAGGATGGCCGCACCCTTGCTGACTACAAC 54830 Query 22014 ATTCAGAAGGAATCTACTCTTCA 22036 || ||||| || ||||| || || Sbjct 54831 ATCCAGAAAGAGTCTACCCTCCA 54853 >seq9953 Length=604776 Score = 86.0 bits (94), Expect = 4e-12 Identities = 155/227 (68%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 21834 ATGCAAATATTTATTAAAACATTAACGGGCAAAACCATTACCGTGGAAACGGAAGCCGCA 21893 ||||| || || | || || || || || |||||||| || |||| ||| | Sbjct 353726 ATGCAGATTTTCGTCAAGACGTTGACTGGGAAAACCATAACTTTGGAGGTGGAGAGTTCC 353667 Query 21894 GAAACGGTGGCCGATCTTAAGCAAAAAATTGCCGATAAAGAGGGTGTACCTGTAAACCAA 21953 || ||| | | | || ||||| || ||| || ||||| || | || | | || Sbjct 353666 GATACGATCGACAATGTTAAGGCGAAGATTCAGGACAAAGAAGGGATTCCACCAGATCAG 353607 Query 21954 CAGAGACTTATCTTTGCTGGCAAACAACTAGAAGATTTAAAAACTATGGCCGATTACAAT 22013 || || | || || ||||| |||||| | |||||| || ||| |||| ||||||||| Sbjct 353606 CAAAGGTTGATTTTCGCTGGGAAACAATTGGAAGATGGAAGGACTTTGGCTGATTACAAT 353547 Query 22014 ATTCAGAAGGAATCTACTCTTCATATGGTATTACGTTTACGAGGAGG 22060 |||||||||||||| ||||| || | || || ||| | || || || Sbjct 353546 ATTCAGAAGGAATCCACTCTCCACCTTGTCTTGCGTCTTCGGGGTGG 353500 Score = 86.0 bits (94), Expect = 4e-12 Identities = 155/227 (68%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 21834 ATGCAAATATTTATTAAAACATTAACGGGCAAAACCATTACCGTGGAAACGGAAGCCGCA 21893 ||||| || || | || || || || || |||||||| || |||| ||| | Sbjct 354852 ATGCAGATTTTCGTCAAGACGTTGACTGGGAAAACCATAACTTTGGAGGTGGAGAGTTCC 354793 Query 21894 GAAACGGTGGCCGATCTTAAGCAAAAAATTGCCGATAAAGAGGGTGTACCTGTAAACCAA 21953 || ||| | | | || ||||| || ||| || ||||| || | || | | || Sbjct 354792 GATACGATCGACAATGTTAAGGCGAAGATTCAGGACAAAGAAGGAATTCCACCAGATCAG 354733 Query 21954 CAGAGACTTATCTTTGCTGGCAAACAACTAGAAGATTTAAAAACTATGGCCGATTACAAT 22013 || || | || || ||||| |||||| | |||||| || ||| |||| ||||||||| Sbjct 354732 CAAAGGTTGATTTTCGCTGGGAAACAATTGGAAGATGGAAGGACTTTGGCTGATTACAAT 354673 Query 22014 ATTCAGAAGGAATCTACTCTTCATATGGTATTACGTTTACGAGGAGG 22060 |||||||||||||| ||||| || | || || ||| | || || || Sbjct 354672 ATTCAGAAGGAATCCACTCTCCACCTTGTCTTGCGTCTTCGGGGTGG 354626 >seq481 Length=542854 Score = 84.2 bits (92), Expect = 2e-11 Identities = 158/231 (68%), Gaps = 6/231 (3%) Strand=Plus/Plus Query 21833 AATGCAAATATTTATTAAAACATTAACGGGCAAAACCATTACCGTGGAAACGGAAGCCGC 21892 |||||| |||||| | ||||| || || || ||||||||||| |||| ||| | | Sbjct 258617 AATGCAGATATTTGTGAAAACTTTGACCGGTAAAACCATTACGTTGGAGGTGGAGAGCTC 258676 Query 21893 AGAAACGGTGGCCGATCTTAAGCAAAAAATTGCCGATAAAGAGGGTGT---ACCTGTAAA 21949 || ||||| | || ||||| || || ||||| |||||| | ||||| | Sbjct 258677 CGACACGGTTGATAATGTTAAGGCCAAGATCCAAGATAAGGAGGGTATCCCACCTG---A 258733 Query 21950 CCAACAGAGACTTATCTTTGCTGGCAAACAACTAGAAGATTTAAAAACTATGGCCGATTA 22009 ||||||||| | || ||||| || || || || || || | ||| | || || || Sbjct 258734 CCAACAGAGGTTGATTTTTGCCGGAAAGCAGCTCGAGGACGGGAGGACTCTTGCGGACTA 258793 Query 22010 CAATATTCAGAAGGAATCTACTCTTCATATGGTATTACGTTTACGAGGAGG 22060 || ||||| ||||| || || || ||| |||| || || | ||||||| Sbjct 258794 TAACATTCAAAAGGAGTCGACCCTGCATTTGGTTTTGCGCCTTAGAGGAGG 258844 >seq10219 Length=308859 Score = 82.4 bits (90), Expect = 5e-11 Identities = 140/203 (69%), Gaps = 0/203 (0%) Strand=Plus/Plus Query 21834 ATGCAAATATTTATTAAAACATTAACGGGCAAAACCATTACCGTGGAAACGGAAGCCGCA 21893 ||||| |||||| | ||||| | || ||||| ||||| ||| | || |||| | Sbjct 22288 ATGCAGATATTTGTGAAAACCCTTACTGGCAAGACCATCACCCTCGAGGTGGAAAGTTCT 22347 Query 21894 GAAACGGTGGCCGATCTTAAGCAAAAAATTGCCGATAAAGAGGGTGTACCTGTAAACCAA 21953 || ||| | | || | ||| || || || || || || | ||| | ||||| Sbjct 22348 GATACGATTGATAATGTCAAGGCCAAGATCCAAGACAAGGAAGGGATCCCTCCAGACCAA 22407 Query 21954 CAGAGACTTATCTTTGCTGGCAAACAACTAGAAGATTTAAAAACTATGGCCGATTACAAT 22013 ||||| ||||||||||| || ||||| || |||||| |||| | || |||||||| Sbjct 22408 CAGAGGCTTATCTTTGCAGGTAAACAGCTTGAAGATGGCCGAACTCTTGCGGATTACAAC 22467 Query 22014 ATTCAGAAGGAATCTACTCTTCA 22036 || ||||| || ||||| || || Sbjct 22468 ATCCAGAAAGAGTCTACCCTCCA 22490 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 357994947416854