Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Gossypium_20barbadense_20[genbank_20GCA_5F001856525.1_202016-11-03]
29,751 sequences; 2,566,742,836 total letters
Query= NC_009127.1
Length=295146
Score E
Sequences producing significant alignments: (Bits) Value
seq22586 150 3e-31
seq7920 95.1 2e-14
seq29212 93.3 8e-14
>seq22586
Length=877411
Score = 150 bits (166), Expect = 3e-31
Identities = 398/601 (66%), Gaps = 10/601 (2%)
Strand=Plus/Minus
Query 42423 CTGGCCTTCTTCGCCGCCTCTGACGGCATAGTCAATGAGAACCTGGCCACCAGGTTCATG 42482
|| ||||| ||||||||||| || ||||||||| ||||||||| || ||||||||
Sbjct 444245 CTCGCCTTTTTCGCCGCCTCCGATGGCATAGTCCTTGAGAACCTTGCTGTTCGGTTCATG 444186
Query 42483 AAAGAGGTGCAGTACTTTGAGGCGCGCTGC-TTCTACGGCTTCCAGATAGCCATAGAGAA 42541
|||||||| ||| || |||||||| ||| || || || ||||| || || || || ||
Sbjct 444185 AAAGAGGTCCAGATCTCCGAGGCGCG-TGCTTTTTATGGTTTCCAAATCGCTATCGAAAA 444127
Query 42542 CGTGCACTCTGAGGTGTACGCCAAACTGCTCAACACGTACATCCTGGATCCCGTCGAGCG 42601
| ||||| ||| ||||| || ||| | || ||||| ||| ||| ||
Sbjct 444126 TATCCACTCCGAGATGTACAGTCTCCTTCTCGAGACTTACATAAAAGATTCCGATGAAAA 444067
Query 42602 TAACGGGCTGTTCAAGGCCATGGAGACGATGCCCTGCATCAAGAAGAAGGCGGACTGGGC 42661
||| | || ||| ||||| |||||| |||| || | || || || || |||||
Sbjct 444066 GAACCGTCTTTTCCGCGCCATCGAGACGGTGCCGTGTGTGGCTAAAAAAGCCGAGTGGGC 444007
Query 42662 GCTCAACTGGATCGAGAGTCCCGACGCAACGTTCGGCGAGAGGCTGGTAGCCTTTACCGC 42721
| || |||||||| | || | ||| |||| ||| || | | || ||| |
Sbjct 444006 TATGAAATGGATCGACGG---CGGAGAAACTTTCGCCGAACGGTTAATCGCTTTTGCTTG 443950
Query 42722 CGTCGAGGGCATCTTCTTCTCGGGCGCCTTCGCCTCCATCTTCTGGCTCAAGCAGAAGGT 42781
||| ||||| ||||| ||||| || ||| |||| || ||| | || ||| ||
Sbjct 443949 CGTAGAGGGGATCTTTTTCTCCGGAAGTTTCTGTGCCATATTTTGGTTAAAAAAGAGGGG 443890
Query 42782 GTCGATGCCCGGACTCACCTTCTCGAACGAACTCATCAGCAGGGACGAGGGGCTGCATAG 42841
|| ||||||||| | || ||||| ||||| | ||| | || || || || || |
Sbjct 443889 GTTAATGCCCGGATTAACTTTCTCAAACGAGTTAATCTCACGAGATGAAGGTCTCCACTG 443830
Query 42842 GGACTTTGCCTGCCTCCTGTTCTCGAGCCACCTCAGGCACAAGCCCTCGAAGGAGCGGGT 42901
|| || || ||| | |||| ||| | |||| || |||| | || || ||
Sbjct 443829 TGATTTCGCTTGCTTGCTGTACTC---TCTCCTCCGGTCAAAGCTGAGTGAAGAACGCGT 443773
Query 42902 CCGGGCCATCATCACGGAGGCCGTGGAGATCGAGAAGGAGTTCCTCACGC-AGTCGCTGC 42960
| | || | | ||| || ||||| || |||| ||||||| | | || | | ||||
Sbjct 443772 GAGAGGGATAGTAAGGGACGCGGTGGACATAGAGAGGGAGTTCGT-ATGCGATGCTCTGC 443714
Query 42961 CCGTGTCCCTGGTCGGCATGAACCACGACCTCATGTGCAAGTACATCCAGTACGTCGCCG 43020
|| | |||| || |||||| ||| | ||| | |||||||| ||| ||| || |
Sbjct 443713 CCTGCGCGTTGGTTGGGATGAACGGCGAGTTAATGAGTCAGTACATCGAGTTCGTAGCGG 443654
Query 43021 A 43021
|
Sbjct 443653 A 443653
Score = 150 bits (166), Expect = 3e-31
Identities = 398/601 (66%), Gaps = 10/601 (2%)
Strand=Plus/Minus
Query 42423 CTGGCCTTCTTCGCCGCCTCTGACGGCATAGTCAATGAGAACCTGGCCACCAGGTTCATG 42482
|| ||||| ||||||||||| || ||||||||| ||||||||| || ||||||||
Sbjct 447380 CTCGCCTTTTTCGCCGCCTCCGATGGCATAGTCCTTGAGAACCTTGCTGTTCGGTTCATG 447321
Query 42483 AAAGAGGTGCAGTACTTTGAGGCGCGCTGC-TTCTACGGCTTCCAGATAGCCATAGAGAA 42541
|||||||| ||| || |||||||| ||| || || || ||||| || || || || ||
Sbjct 447320 AAAGAGGTCCAGATCTCCGAGGCGCG-TGCTTTTTATGGTTTCCAAATCGCTATCGAAAA 447262
Query 42542 CGTGCACTCTGAGGTGTACGCCAAACTGCTCAACACGTACATCCTGGATCCCGTCGAGCG 42601
| ||||| ||| ||||| || ||| | || ||||| ||| ||| ||
Sbjct 447261 TATCCACTCCGAGATGTACAGTCTCCTTCTCGAGACTTACATAAAAGATTCCGATGAAAA 447202
Query 42602 TAACGGGCTGTTCAAGGCCATGGAGACGATGCCCTGCATCAAGAAGAAGGCGGACTGGGC 42661
||| | || ||| ||||| |||||| |||| || | || || || || |||||
Sbjct 447201 GAACCGTCTTTTCCGCGCCATCGAGACGGTGCCGTGTGTGGCTAAAAAAGCCGAGTGGGC 447142
Query 42662 GCTCAACTGGATCGAGAGTCCCGACGCAACGTTCGGCGAGAGGCTGGTAGCCTTTACCGC 42721
| || |||||||| | || | ||| |||| ||| || | | || ||| |
Sbjct 447141 TATGAAATGGATCGACGG---CGGAGAAACTTTCGCCGAACGGTTAATCGCTTTTGCTTG 447085
Query 42722 CGTCGAGGGCATCTTCTTCTCGGGCGCCTTCGCCTCCATCTTCTGGCTCAAGCAGAAGGT 42781
||| ||||| ||||| ||||| || ||| |||| || ||| | || ||| ||
Sbjct 447084 CGTAGAGGGGATCTTTTTCTCCGGAAGTTTCTGTGCCATATTTTGGTTAAAAAAGAGGGG 447025
Query 42782 GTCGATGCCCGGACTCACCTTCTCGAACGAACTCATCAGCAGGGACGAGGGGCTGCATAG 42841
|| ||||||||| | || ||||| ||||| | ||| | || || || || || |
Sbjct 447024 GTTAATGCCCGGATTAACTTTCTCAAACGAGTTAATCTCACGAGATGAAGGTCTCCACTG 446965
Query 42842 GGACTTTGCCTGCCTCCTGTTCTCGAGCCACCTCAGGCACAAGCCCTCGAAGGAGCGGGT 42901
|| || || ||| | |||| ||| | |||| || |||| | || || ||
Sbjct 446964 TGATTTCGCTTGCTTGCTGTACTC---TCTCCTCCGGTCAAAGCTGAGTGAAGAACGCGT 446908
Query 42902 CCGGGCCATCATCACGGAGGCCGTGGAGATCGAGAAGGAGTTCCTCACGC-AGTCGCTGC 42960
| | || | | ||| || ||||| || |||| ||||||| | | || | | ||||
Sbjct 446907 GAGAGGGATAGTAAGGGACGCGGTGGACATAGAGAGGGAGTTCGT-ATGCGATGCTCTGC 446849
Query 42961 CCGTGTCCCTGGTCGGCATGAACCACGACCTCATGTGCAAGTACATCCAGTACGTCGCCG 43020
|| | |||| || |||||| ||| | ||| | |||||||| ||| ||| || |
Sbjct 446848 CCTGCGCGTTGGTTGGGATGAACGGCGAGTTAATGAGTCAGTACATCGAGTTCGTAGCGG 446789
Query 43021 A 43021
|
Sbjct 446788 A 446788
>seq7920
Length=357604
Score = 95.1 bits (104), Expect = 2e-14
Identities = 104/136 (76%), Gaps = 2/136 (1%)
Strand=Plus/Plus
Query 42423 CTGGCCTTCTTCGCCGCCTCTGACGGCATAGTCAATGAGAACCTGGCCACCAGGTTCATG 42482
|| ||||| ||||||||||| || ||||||||| ||||||||| || ||||||||
Sbjct 357470 CTCGCCTTTTTCGCCGCCTCCGATGGCATAGTCCTTGAGAACCTTGCTGTTCGGTTCATG 357529
Query 42483 AAAGAGGTGCAGTACTTTGAGGCGCGCTGC-TTCTACGGCTTCCAGATAGCCATAGAGAA 42541
|||||||| ||| || |||||||| ||| || || || ||||| || || || || ||
Sbjct 357530 AAAGAGGTCCAGATCTCCGAGGCGCG-TGCTTTTTATGGTTTCCAAATCGCTATCGAAAA 357588
Query 42542 CGTGCACTCTGAGGTG 42557
| ||||| ||| ||
Sbjct 357589 TATCCACTCCGAGATG 357604
>seq29212
Length=358297
Score = 93.3 bits (102), Expect = 8e-14
Identities = 289/444 (65%), Gaps = 5/444 (1%)
Strand=Plus/Plus
Query 42423 CTGGCCTTCTTCGCCGCCTCTGACGGCATAGTCAATGAGAACCTGGCCACCAGGTTCATG 42482
|| |||||||||||||| || || ||||| || || || || || | ||||||
Sbjct 222796 CTTGCCTTCTTCGCCGCATCCGATGGCATCGTTCTAGAAAATCTCGCTGTTCGCTTCATG 222855
Query 42483 AAAGAGGTGCAGTACTTTGAGGCGCGCTGC-TTCTACGGCTTCCAGATAGCCATAGAGAA 42541
|||||||| || | |||||||| ||| || || || ||||| || ||||| |||||
Sbjct 222856 AAAGAGGTCCAAATCGCGGAGGCGCG-TGCATTTTATGGATTCCAAATCGCCATCGAGAA 222914
Query 42542 CGTGCACTCTGAGGTGTACGCCAAACTGCTCAACACGTACATCCTGGATCCCGTCGAGCG 42601
| ||||||||| |||| || ||| | || || || ||| || |||
Sbjct 222915 TATCCACTCTGAGATGTATAGTCTCCTCCTCGAAACTTATATTAAAGATTCCACCGAAAA 222974
Query 42602 TAACGGGCTGTTCAAGGCCATGGAGACGATGCCCTGCATCAAGAAGAAGGCGGACTGGGC 42661
||| | || ||| | || | || ||| |||| ||| | || || || || |||||
Sbjct 222975 AAACCGCCTCTTCCACGCTACTGAAACGGTGCCGTGCGTGGCTAAAAAAGCCGATTGGGC 223034
Query 42662 GCTCAACTGGATCGAGAGTCCCGACGCAACGTTCGGCGAGAGGCTGGTAGCCTTTACCGC 42721
| || |||||||| | || || | | || | ||| || | | || || |
Sbjct 223035 TTTGAAATGGATCGACGG---CGGCGAAGCTTTTGCCGAACGGTTAATCGCTTTCGCTTG 223091
Query 42722 CGTCGAGGGCATCTTCTTCTCGGGCGCCTTCGCCTCCATCTTCTGGCTCAAGCAGAAGGT 42781
||| || ||||| || ||||| ||| ||| | || || ||| | || || |
Sbjct 223092 CGTAGAAGGCATATTTTTCTCCGGCAGTTTCTGTGCGATATTTTGGTTAAAAAAGCGCGG 223151
Query 42782 GTCGATGCCCGGACTCACCTTCTCGAACGAACTCATCAGCAGGGACGAGGGGCTGCATAG 42841
|| ||||| ||| | || ||||| ||||| | ||| | || || || || ||| |
Sbjct 223152 GTTAATGCCTGGATTAACTTTCTCAAACGAGTTGATCTCTCGAGATGAAGGTCTCCATTG 223211
Query 42842 GGACTTTGCCTGCCTCCTGTTCTC 42865
|||||||| ||| | |||| |||
Sbjct 223212 CGACTTTGCTTGCTTGCTGTACTC 223235
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 943988012055760
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