Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Gossypium_20barbadense_20[genbank_20GCA_5F001856525.1_202016-11-03] 29,751 sequences; 2,566,742,836 total letters Query= NC_009127.1 Length=295146 Score E Sequences producing significant alignments: (Bits) Value seq22586 150 3e-31 seq7920 95.1 2e-14 seq29212 93.3 8e-14 >seq22586 Length=877411 Score = 150 bits (166), Expect = 3e-31 Identities = 398/601 (66%), Gaps = 10/601 (2%) Strand=Plus/Minus Query 42423 CTGGCCTTCTTCGCCGCCTCTGACGGCATAGTCAATGAGAACCTGGCCACCAGGTTCATG 42482 || ||||| ||||||||||| || ||||||||| ||||||||| || |||||||| Sbjct 444245 CTCGCCTTTTTCGCCGCCTCCGATGGCATAGTCCTTGAGAACCTTGCTGTTCGGTTCATG 444186 Query 42483 AAAGAGGTGCAGTACTTTGAGGCGCGCTGC-TTCTACGGCTTCCAGATAGCCATAGAGAA 42541 |||||||| ||| || |||||||| ||| || || || ||||| || || || || || Sbjct 444185 AAAGAGGTCCAGATCTCCGAGGCGCG-TGCTTTTTATGGTTTCCAAATCGCTATCGAAAA 444127 Query 42542 CGTGCACTCTGAGGTGTACGCCAAACTGCTCAACACGTACATCCTGGATCCCGTCGAGCG 42601 | ||||| ||| ||||| || ||| | || ||||| ||| ||| || Sbjct 444126 TATCCACTCCGAGATGTACAGTCTCCTTCTCGAGACTTACATAAAAGATTCCGATGAAAA 444067 Query 42602 TAACGGGCTGTTCAAGGCCATGGAGACGATGCCCTGCATCAAGAAGAAGGCGGACTGGGC 42661 ||| | || ||| ||||| |||||| |||| || | || || || || ||||| Sbjct 444066 GAACCGTCTTTTCCGCGCCATCGAGACGGTGCCGTGTGTGGCTAAAAAAGCCGAGTGGGC 444007 Query 42662 GCTCAACTGGATCGAGAGTCCCGACGCAACGTTCGGCGAGAGGCTGGTAGCCTTTACCGC 42721 | || |||||||| | || | ||| |||| ||| || | | || ||| | Sbjct 444006 TATGAAATGGATCGACGG---CGGAGAAACTTTCGCCGAACGGTTAATCGCTTTTGCTTG 443950 Query 42722 CGTCGAGGGCATCTTCTTCTCGGGCGCCTTCGCCTCCATCTTCTGGCTCAAGCAGAAGGT 42781 ||| ||||| ||||| ||||| || ||| |||| || ||| | || ||| || Sbjct 443949 CGTAGAGGGGATCTTTTTCTCCGGAAGTTTCTGTGCCATATTTTGGTTAAAAAAGAGGGG 443890 Query 42782 GTCGATGCCCGGACTCACCTTCTCGAACGAACTCATCAGCAGGGACGAGGGGCTGCATAG 42841 || ||||||||| | || ||||| ||||| | ||| | || || || || || | Sbjct 443889 GTTAATGCCCGGATTAACTTTCTCAAACGAGTTAATCTCACGAGATGAAGGTCTCCACTG 443830 Query 42842 GGACTTTGCCTGCCTCCTGTTCTCGAGCCACCTCAGGCACAAGCCCTCGAAGGAGCGGGT 42901 || || || ||| | |||| ||| | |||| || |||| | || || || Sbjct 443829 TGATTTCGCTTGCTTGCTGTACTC---TCTCCTCCGGTCAAAGCTGAGTGAAGAACGCGT 443773 Query 42902 CCGGGCCATCATCACGGAGGCCGTGGAGATCGAGAAGGAGTTCCTCACGC-AGTCGCTGC 42960 | | || | | ||| || ||||| || |||| ||||||| | | || | | |||| Sbjct 443772 GAGAGGGATAGTAAGGGACGCGGTGGACATAGAGAGGGAGTTCGT-ATGCGATGCTCTGC 443714 Query 42961 CCGTGTCCCTGGTCGGCATGAACCACGACCTCATGTGCAAGTACATCCAGTACGTCGCCG 43020 || | |||| || |||||| ||| | ||| | |||||||| ||| ||| || | Sbjct 443713 CCTGCGCGTTGGTTGGGATGAACGGCGAGTTAATGAGTCAGTACATCGAGTTCGTAGCGG 443654 Query 43021 A 43021 | Sbjct 443653 A 443653 Score = 150 bits (166), Expect = 3e-31 Identities = 398/601 (66%), Gaps = 10/601 (2%) Strand=Plus/Minus Query 42423 CTGGCCTTCTTCGCCGCCTCTGACGGCATAGTCAATGAGAACCTGGCCACCAGGTTCATG 42482 || ||||| ||||||||||| || ||||||||| ||||||||| || |||||||| Sbjct 447380 CTCGCCTTTTTCGCCGCCTCCGATGGCATAGTCCTTGAGAACCTTGCTGTTCGGTTCATG 447321 Query 42483 AAAGAGGTGCAGTACTTTGAGGCGCGCTGC-TTCTACGGCTTCCAGATAGCCATAGAGAA 42541 |||||||| ||| || |||||||| ||| || || || ||||| || || || || || Sbjct 447320 AAAGAGGTCCAGATCTCCGAGGCGCG-TGCTTTTTATGGTTTCCAAATCGCTATCGAAAA 447262 Query 42542 CGTGCACTCTGAGGTGTACGCCAAACTGCTCAACACGTACATCCTGGATCCCGTCGAGCG 42601 | ||||| ||| ||||| || ||| | || ||||| ||| ||| || Sbjct 447261 TATCCACTCCGAGATGTACAGTCTCCTTCTCGAGACTTACATAAAAGATTCCGATGAAAA 447202 Query 42602 TAACGGGCTGTTCAAGGCCATGGAGACGATGCCCTGCATCAAGAAGAAGGCGGACTGGGC 42661 ||| | || ||| ||||| |||||| |||| || | || || || || ||||| Sbjct 447201 GAACCGTCTTTTCCGCGCCATCGAGACGGTGCCGTGTGTGGCTAAAAAAGCCGAGTGGGC 447142 Query 42662 GCTCAACTGGATCGAGAGTCCCGACGCAACGTTCGGCGAGAGGCTGGTAGCCTTTACCGC 42721 | || |||||||| | || | ||| |||| ||| || | | || ||| | Sbjct 447141 TATGAAATGGATCGACGG---CGGAGAAACTTTCGCCGAACGGTTAATCGCTTTTGCTTG 447085 Query 42722 CGTCGAGGGCATCTTCTTCTCGGGCGCCTTCGCCTCCATCTTCTGGCTCAAGCAGAAGGT 42781 ||| ||||| ||||| ||||| || ||| |||| || ||| | || ||| || Sbjct 447084 CGTAGAGGGGATCTTTTTCTCCGGAAGTTTCTGTGCCATATTTTGGTTAAAAAAGAGGGG 447025 Query 42782 GTCGATGCCCGGACTCACCTTCTCGAACGAACTCATCAGCAGGGACGAGGGGCTGCATAG 42841 || ||||||||| | || ||||| ||||| | ||| | || || || || || | Sbjct 447024 GTTAATGCCCGGATTAACTTTCTCAAACGAGTTAATCTCACGAGATGAAGGTCTCCACTG 446965 Query 42842 GGACTTTGCCTGCCTCCTGTTCTCGAGCCACCTCAGGCACAAGCCCTCGAAGGAGCGGGT 42901 || || || ||| | |||| ||| | |||| || |||| | || || || Sbjct 446964 TGATTTCGCTTGCTTGCTGTACTC---TCTCCTCCGGTCAAAGCTGAGTGAAGAACGCGT 446908 Query 42902 CCGGGCCATCATCACGGAGGCCGTGGAGATCGAGAAGGAGTTCCTCACGC-AGTCGCTGC 42960 | | || | | ||| || ||||| || |||| ||||||| | | || | | |||| Sbjct 446907 GAGAGGGATAGTAAGGGACGCGGTGGACATAGAGAGGGAGTTCGT-ATGCGATGCTCTGC 446849 Query 42961 CCGTGTCCCTGGTCGGCATGAACCACGACCTCATGTGCAAGTACATCCAGTACGTCGCCG 43020 || | |||| || |||||| ||| | ||| | |||||||| ||| ||| || | Sbjct 446848 CCTGCGCGTTGGTTGGGATGAACGGCGAGTTAATGAGTCAGTACATCGAGTTCGTAGCGG 446789 Query 43021 A 43021 | Sbjct 446788 A 446788 >seq7920 Length=357604 Score = 95.1 bits (104), Expect = 2e-14 Identities = 104/136 (76%), Gaps = 2/136 (1%) Strand=Plus/Plus Query 42423 CTGGCCTTCTTCGCCGCCTCTGACGGCATAGTCAATGAGAACCTGGCCACCAGGTTCATG 42482 || ||||| ||||||||||| || ||||||||| ||||||||| || |||||||| Sbjct 357470 CTCGCCTTTTTCGCCGCCTCCGATGGCATAGTCCTTGAGAACCTTGCTGTTCGGTTCATG 357529 Query 42483 AAAGAGGTGCAGTACTTTGAGGCGCGCTGC-TTCTACGGCTTCCAGATAGCCATAGAGAA 42541 |||||||| ||| || |||||||| ||| || || || ||||| || || || || || Sbjct 357530 AAAGAGGTCCAGATCTCCGAGGCGCG-TGCTTTTTATGGTTTCCAAATCGCTATCGAAAA 357588 Query 42542 CGTGCACTCTGAGGTG 42557 | ||||| ||| || Sbjct 357589 TATCCACTCCGAGATG 357604 >seq29212 Length=358297 Score = 93.3 bits (102), Expect = 8e-14 Identities = 289/444 (65%), Gaps = 5/444 (1%) Strand=Plus/Plus Query 42423 CTGGCCTTCTTCGCCGCCTCTGACGGCATAGTCAATGAGAACCTGGCCACCAGGTTCATG 42482 || |||||||||||||| || || ||||| || || || || || | |||||| Sbjct 222796 CTTGCCTTCTTCGCCGCATCCGATGGCATCGTTCTAGAAAATCTCGCTGTTCGCTTCATG 222855 Query 42483 AAAGAGGTGCAGTACTTTGAGGCGCGCTGC-TTCTACGGCTTCCAGATAGCCATAGAGAA 42541 |||||||| || | |||||||| ||| || || || ||||| || ||||| ||||| Sbjct 222856 AAAGAGGTCCAAATCGCGGAGGCGCG-TGCATTTTATGGATTCCAAATCGCCATCGAGAA 222914 Query 42542 CGTGCACTCTGAGGTGTACGCCAAACTGCTCAACACGTACATCCTGGATCCCGTCGAGCG 42601 | ||||||||| |||| || ||| | || || || ||| || ||| Sbjct 222915 TATCCACTCTGAGATGTATAGTCTCCTCCTCGAAACTTATATTAAAGATTCCACCGAAAA 222974 Query 42602 TAACGGGCTGTTCAAGGCCATGGAGACGATGCCCTGCATCAAGAAGAAGGCGGACTGGGC 42661 ||| | || ||| | || | || ||| |||| ||| | || || || || ||||| Sbjct 222975 AAACCGCCTCTTCCACGCTACTGAAACGGTGCCGTGCGTGGCTAAAAAAGCCGATTGGGC 223034 Query 42662 GCTCAACTGGATCGAGAGTCCCGACGCAACGTTCGGCGAGAGGCTGGTAGCCTTTACCGC 42721 | || |||||||| | || || | | || | ||| || | | || || | Sbjct 223035 TTTGAAATGGATCGACGG---CGGCGAAGCTTTTGCCGAACGGTTAATCGCTTTCGCTTG 223091 Query 42722 CGTCGAGGGCATCTTCTTCTCGGGCGCCTTCGCCTCCATCTTCTGGCTCAAGCAGAAGGT 42781 ||| || ||||| || ||||| ||| ||| | || || ||| | || || | Sbjct 223092 CGTAGAAGGCATATTTTTCTCCGGCAGTTTCTGTGCGATATTTTGGTTAAAAAAGCGCGG 223151 Query 42782 GTCGATGCCCGGACTCACCTTCTCGAACGAACTCATCAGCAGGGACGAGGGGCTGCATAG 42841 || ||||| ||| | || ||||| ||||| | ||| | || || || || ||| | Sbjct 223152 GTTAATGCCTGGATTAACTTTCTCAAACGAGTTGATCTCTCGAGATGAAGGTCTCCATTG 223211 Query 42842 GGACTTTGCCTGCCTCCTGTTCTC 42865 |||||||| ||| | |||| ||| Sbjct 223212 CGACTTTGCTTGCTTGCTGTACTC 223235 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 943988012055760