Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Gossypium_20barbadense_20[genbank_20GCA_5F001856525.1_202016-11-03]
29,751 sequences; 2,566,742,836 total letters
Query= NC_009899.1
Length=344691
Score E
Sequences producing significant alignments: (Bits) Value
seq29212 129 1e-24
seq22586 107 4e-18
>seq29212
Length=358297
Score = 129 bits (142), Expect = 1e-24
Identities = 565/880 (64%), Gaps = 23/880 (3%)
Strand=Plus/Plus
Query 242869 TCTGCAT--TCCCCATCCAGTATCCGGATATGTGGGATATGTATAAGAAGGCAGTGGCAA 242926
||||||| |||| ||||| || || | || ||||| ||||||||||| || | ||
Sbjct 222644 TCTGCATGTTCCCAATCCAATACCCACAGATATGGGAAATGTATAAGAAAGCCGAAGCCT 222703
Query 242927 CCTTTTGGACCACCGAGGAAGTTCCTCTGAACGCAGA-CGTCGTCGACTGGCGCGAGAAA 242985
| |||||||| ||||||||||| ||| | || | || | |||||| | ||
Sbjct 222704 CTTTTTGGACTGCCGAGGAAGTTGATCTCTCTTCCGATCTTCCAC-ACTGGC---AAAAT 222759
Query 242986 CTCAATGACGACGAACGTCATTTCATCAAACACATTCTAGGTTTTTTCGCAGGCTCCGAT 243045
|| || | ||||||||| || ||||||| || | || | || ||||| | ||||||
Sbjct 222760 CTTAACGCCGACGAACGCCACTTCATCAGTCATGTCCTTGCCTTCTTCGCCGCATCCGAT 222819
Query 243046 GGTATTGTGATGGAAAATCT-GCAGACCAACTTTAGTGTGGAAGTAACGGTTCCAGAGGC 243104
|| || || | |||||||| || | | ||| | || || | | |||||
Sbjct 222820 GGCATCGTTCTAGAAAATCTCGCTGTTCG-CTTCATGAAAGAGGTCCAAATCGCGGAGGC 222878
Query 243105 ACGGCAATTTTATGCTTACCAAACATTCAACGAATCTATCCATTCTGAACAATATGCTCT 243164
|| |||||||| | ||||| || ||| |||||| ||||| ||| |||
Sbjct 222879 GCGTGCATTTTATGGATTCCAAATCGCCATCGAGAATATCCACTCTGAGATGTATAGTCT 222938
Query 243165 TCTTATCGACGCGCTTATTTCAGATGAACAAGAGCGAAACGAGCTTTTCGACGCCATCGA 243224
|| |||| | |||| |||| || |||| || ||| |||| | ||
Sbjct 222939 CCTCCTCGAAACTTATATTAAAGATTCCACCGAAAAAAACCGCCTCTTCCACGCTACTGA 222998
Query 243225 AAACATTCCGGCGGTTCATAACAAGGCAAAATGGGCTCAGAAGTGGCTAGAACCCGGTAA 243284
|| | ||| || ||| || || | |||||| ||| ||| | || ||| |
Sbjct 222999 AACGGTGCCGTGCGTGGCTAAAAAAGCCGATTGGGCTTTGAAATGGATCGACGGCGGCGA 223058
Query 243285 ATCATTTGCTGAGCGTCTCGTCGCCTGGGTGTGCGTTGAAGGTATTCTGTTTTCCGGGAG 243344
| | ||||| || || | |||| | | ||||| ||||| || | || ||||| ||
Sbjct 223059 AGCTTTTGCCGAACGGTTAATCGCTTTCGCTTGCGTAGAAGGCATATTTTTCTCCGGCAG 223118
Query 243345 TTTCTGCGCCATCTTTTGGCTGCGGAACAAAG----GTGTGATGCCTGGCCTCGGTCTGT 243400
|||||| || || |||||| | || |||| | | |||||||| | | | |
Sbjct 223119 TTTCTGTGCGATATTTTGGTT----AAAAAAGCGCGGGTTAATGCCTGGATTAACTTTCT 223174
Query 243401 CTAACGAGTTCATCAGTCGCGACGAGGGCCTTCACCAACAGTTCGGTGAGCTTA-TGTAT 243459
| |||||||| ||| ||| || || || || || | || | | |||| ||||
Sbjct 223175 CAAACGAGTTGATCTCTCGAGATGAAGGTCTCCATTGCGACTTTGCTT-GCTTGCTGTAC 223233
Query 243460 TCAAAGCTCCAGAACAAGCTACCATTCGAAA-CG-GTCAAACAAATCATCACAGAAGCAG 243517
|| |||||| |||||| | | | | || || || ||| | | || || |
Sbjct 223234 TCTCTCCTCCAGTCAAAGCTA--AGTGAAGAGCGCGTGAAGGGAATAGTGAGGGATGCGG 223291
Query 243518 TTGAAAACGAAAAGGAATTCATTTGCGACGCTATTCCATGCCGGCTTATTGGCATGAACT 243577
| || | || | ||| || | ||||||||| |||| ||| | | |||| ||||||
Sbjct 223292 TGGATATAGAGAGGGAGTTTGTATGCGACGCTCTTCCCTGCGCGTTAGTTGGGATGAACG 223351
Query 243578 CTGAACTCATGGGACAGTACATCGAATTCGTAGCCGACCGCATTTTCATCGCGCTTGGTT 243637
||| | ||| | || ||||| || ||||| || || || | || || | || |
Sbjct 223352 GTGAGTTGATGAGTCAATACATTGAGTTCGTTGCGGATCGGTTGTTAGGAGCTTTAGGGT 223411
Query 243638 ATGAGAAAGTGTACAACTCCAAGAACCCCTTTGCCTTTATGGAGCTCATTTCGCTTCAAG 243697
||| ||| ||||||| | ||||| |||| | ||||| || ||||| | ||||
Sbjct 223412 ATGGCAAAATGTACAATGCGGCTAACCCTTTTGATTGGATGGAACTAATTTCATTGCAAG 223471
Query 243698 GGAAAACTAACTTCTTCGAAAAGCGTGTCAGTGATTATCA 243737
||||||| || |||||||| ||| | || | || |||||
Sbjct 223472 GGAAAACCAATTTCTTCGAGAAGAGAGTTGGAGAGTATCA 223511
>seq22586
Length=877411
Score = 107 bits (118), Expect = 4e-18
Identities = 559/876 (64%), Gaps = 27/876 (3%)
Strand=Plus/Minus
Query 242875 TTCCCCATCCAGTATCCGGATATGTGGGATATGTATAAGAAGGCAGTGGCAACCTTTTGG 242934
|| || ||||| || || || | ||||| ||||| ||||| || | || | ||||||
Sbjct 444389 TTTCCGATCCAATACCCAGAAGTATGGGAAATGTACAAGAAAGCCGAAGCGTCGTTTTGG 444330
Query 242935 ACCACCGAGGAAGTTCCTCTGAACGCAGA-CGTCGTCGACTGGCGCGAGAAACTCAATGA 242993
||| | |||||||| |||| | || | ||||| ||||| || | |||| |
Sbjct 444329 ACCGCAGAGGAAGTCGATCTGTCTTCCGATCTTCGTC-ACTGG---GAAACTCTCACCGC 444274
Query 242994 CGACGAACGTCATTTCATCAAACACATTCTAGGTTTTTTCGCAGGCTCCGATGGTATTGT 243053
||| || | ||| ||||| | ||| |||| | |||||||| | ||||||||| || ||
Sbjct 444273 CGATGAGCATCACTTCATTAGTCACGTTCTCGCCTTTTTCGCCGCCTCCGATGGCATAGT 444214
Query 243054 GATGGAAAATCT-GCAGACCAACTTTAGTGTGGAAGTAACGGTTCCAGAGGCACGGCAAT 243112
| || || || || | | || | || || | | | ||||| || |
Sbjct 444213 CCTTGAGAACCTTGCTGTTCGG-TTCATGAAAGAGGTCCAGATCTCCGAGGCGCGTGCTT 444155
Query 243113 TTTATGCTTACCAAACATTCAACGAATCTATCCATTCTGAACAATATGCTCTTCTTATCG 243172
|||||| || ||||| | |||| |||||| || || || ||| ||| |||
Sbjct 444154 TTTATGGTTTCCAAATCGCTATCGAAAATATCCACTCCGAGATGTACAGTCTCCTTCTCG 444095
Query 243173 ACGCGCTTAT------TTCAGATGAACAAGAGCGAAACGAGCTTTTCGACGCCATCGAAA 243226
| | || ||| |||||| | ||| || |||||| ||||||||| |
Sbjct 444094 AGACTTACATAAAAGATTCCGATGAAAA-----GAACCGT-CTTTTCCGCGCCATCGAGA 444041
Query 243227 ACATTCCGGCGGTTCATAACAAGGCAAAATGGGCTCAGAAGTGGCTAGAACCCGGTAAAT 243286
| ||| || ||| || || | |||||| ||| ||| | || ||| ||
Sbjct 444040 CGGTGCCGTGTGTGGCTAAAAAAGCCGAGTGGGCTATGAAATGGATCGACGGCGGAGAAA 443981
Query 243287 CATTTGCTGAGCGTCTCGTCGCCTGGGTGTGCGTTGAAGGTATTCTGTTTTCCGGGAGTT 243346
| || || || || | |||| | | ||||| || || || | || ||||| ||||
Sbjct 443980 CTTTCGCCGAACGGTTAATCGCTTTTGCTTGCGTAGAGGGGATCTTTTTCTCCGGAAGTT 443921
Query 243347 TCTGCGCCATCTTTTGGCTGCGGAACAAAGGTGTGATGCCTGGCCTCGGTCTGTCTAACG 243406
|||| ||||| |||||| | || | || | ||||| || | | | || ||||
Sbjct 443920 TCTGTGCCATATTTTGGTTAAAAAAGAGGGGGTTAATGCCCGGATTAACTTTCTCAAACG 443861
Query 243407 AGTTCATCAGTCGCGACGAGGGCCTTCACCAACAGTTCGGTGAGCTTA-TGTATTCAAAG 243465
|||| ||| || || || || || ||| | |||| | |||| |||| ||
Sbjct 443860 AGTTAATCTCACGAGATGAAGGTCTCCACTGTGATTTCGCTT-GCTTGCTGTACTCTCTC 443802
Query 243466 CTCCAGAACAAGCTACCATTCGA-AACG-GTCAAACAAATCATCACAGAAGCAGTTGAAA 243523
|||| | ||||| | | | |||| || | | || | | || || || || |
Sbjct 443801 CTCCGGTCAAAGCTG--AGTGAAGAACGCGTGAGAGGGATAGTAAGGGACGCGGTGGACA 443744
Query 243524 ACGAAAAGGAATTCATTTGCGACGCTATTCCATGCCGGCTTATTGGCATGAACTCTGAAC 243583
|| | ||| ||| | ||||| ||| | || ||| | | |||| |||||| ||
Sbjct 443743 TAGAGAGGGAGTTCGTATGCGATGCTCTGCCCTGCGCGTTGGTTGGGATGAACGGCGAGT 443684
Query 243584 TCATGGGACAGTACATCGAATTCGTAGCCGACCGCATTTTCATCGCGCTTGGTTATGAGA 243643
| ||| | ||||||||||| |||||||| || || | || ||| | || || | ||
Sbjct 443683 TAATGAGTCAGTACATCGAGTTCGTAGCGGATCGGTTGTTGGGAGCGTTAGGGTACG-GA 443625
Query 243644 AAG-TGTACAACTCCAAGAACCCCTTTGCCTTTATGGAGCTCATTTCGCTTCAAGGGAAA 243702
||| |||||||| ||||| |||| | ||||| || || ||| | |||||||||
Sbjct 443624 AAGATGTACAACGTGGTCAACCCATTTGATTGGATGGAACTGATATCGTTGCAAGGGAAA 443565
Query 243703 ACTAACTTCTTCGAAAAGCGTGTCAGTGATTATCAA 243738
|| || |||||||| || | || | || ||||||
Sbjct 443564 ACCAATTTCTTCGAGAAAAGAGTTGGAGAGTATCAA 443529
Score = 107 bits (118), Expect = 4e-18
Identities = 559/876 (64%), Gaps = 27/876 (3%)
Strand=Plus/Minus
Query 242875 TTCCCCATCCAGTATCCGGATATGTGGGATATGTATAAGAAGGCAGTGGCAACCTTTTGG 242934
|| || ||||| || || || | ||||| ||||| ||||| || | || | ||||||
Sbjct 447524 TTTCCGATCCAATACCCAGAAGTATGGGAAATGTACAAGAAAGCCGAAGCGTCGTTTTGG 447465
Query 242935 ACCACCGAGGAAGTTCCTCTGAACGCAGA-CGTCGTCGACTGGCGCGAGAAACTCAATGA 242993
||| | |||||||| |||| | || | ||||| ||||| || | |||| |
Sbjct 447464 ACCGCAGAGGAAGTCGATCTGTCTTCCGATCTTCGTC-ACTGG---GAAACTCTCACCGC 447409
Query 242994 CGACGAACGTCATTTCATCAAACACATTCTAGGTTTTTTCGCAGGCTCCGATGGTATTGT 243053
||| || | ||| ||||| | ||| |||| | |||||||| | ||||||||| || ||
Sbjct 447408 CGATGAGCATCACTTCATTAGTCACGTTCTCGCCTTTTTCGCCGCCTCCGATGGCATAGT 447349
Query 243054 GATGGAAAATCT-GCAGACCAACTTTAGTGTGGAAGTAACGGTTCCAGAGGCACGGCAAT 243112
| || || || || | | || | || || | | | ||||| || |
Sbjct 447348 CCTTGAGAACCTTGCTGTTCGG-TTCATGAAAGAGGTCCAGATCTCCGAGGCGCGTGCTT 447290
Query 243113 TTTATGCTTACCAAACATTCAACGAATCTATCCATTCTGAACAATATGCTCTTCTTATCG 243172
|||||| || ||||| | |||| |||||| || || || ||| ||| |||
Sbjct 447289 TTTATGGTTTCCAAATCGCTATCGAAAATATCCACTCCGAGATGTACAGTCTCCTTCTCG 447230
Query 243173 ACGCGCTTAT------TTCAGATGAACAAGAGCGAAACGAGCTTTTCGACGCCATCGAAA 243226
| | || ||| |||||| | ||| || |||||| ||||||||| |
Sbjct 447229 AGACTTACATAAAAGATTCCGATGAAAA-----GAACCGT-CTTTTCCGCGCCATCGAGA 447176
Query 243227 ACATTCCGGCGGTTCATAACAAGGCAAAATGGGCTCAGAAGTGGCTAGAACCCGGTAAAT 243286
| ||| || ||| || || | |||||| ||| ||| | || ||| ||
Sbjct 447175 CGGTGCCGTGTGTGGCTAAAAAAGCCGAGTGGGCTATGAAATGGATCGACGGCGGAGAAA 447116
Query 243287 CATTTGCTGAGCGTCTCGTCGCCTGGGTGTGCGTTGAAGGTATTCTGTTTTCCGGGAGTT 243346
| || || || || | |||| | | ||||| || || || | || ||||| ||||
Sbjct 447115 CTTTCGCCGAACGGTTAATCGCTTTTGCTTGCGTAGAGGGGATCTTTTTCTCCGGAAGTT 447056
Query 243347 TCTGCGCCATCTTTTGGCTGCGGAACAAAGGTGTGATGCCTGGCCTCGGTCTGTCTAACG 243406
|||| ||||| |||||| | || | || | ||||| || | | | || ||||
Sbjct 447055 TCTGTGCCATATTTTGGTTAAAAAAGAGGGGGTTAATGCCCGGATTAACTTTCTCAAACG 446996
Query 243407 AGTTCATCAGTCGCGACGAGGGCCTTCACCAACAGTTCGGTGAGCTTA-TGTATTCAAAG 243465
|||| ||| || || || || || ||| | |||| | |||| |||| ||
Sbjct 446995 AGTTAATCTCACGAGATGAAGGTCTCCACTGTGATTTCGCTT-GCTTGCTGTACTCTCTC 446937
Query 243466 CTCCAGAACAAGCTACCATTCGA-AACG-GTCAAACAAATCATCACAGAAGCAGTTGAAA 243523
|||| | ||||| | | | |||| || | | || | | || || || || |
Sbjct 446936 CTCCGGTCAAAGCTG--AGTGAAGAACGCGTGAGAGGGATAGTAAGGGACGCGGTGGACA 446879
Query 243524 ACGAAAAGGAATTCATTTGCGACGCTATTCCATGCCGGCTTATTGGCATGAACTCTGAAC 243583
|| | ||| ||| | ||||| ||| | || ||| | | |||| |||||| ||
Sbjct 446878 TAGAGAGGGAGTTCGTATGCGATGCTCTGCCCTGCGCGTTGGTTGGGATGAACGGCGAGT 446819
Query 243584 TCATGGGACAGTACATCGAATTCGTAGCCGACCGCATTTTCATCGCGCTTGGTTATGAGA 243643
| ||| | ||||||||||| |||||||| || || | || ||| | || || | ||
Sbjct 446818 TAATGAGTCAGTACATCGAGTTCGTAGCGGATCGGTTGTTGGGAGCGTTAGGGTACG-GA 446760
Query 243644 AAG-TGTACAACTCCAAGAACCCCTTTGCCTTTATGGAGCTCATTTCGCTTCAAGGGAAA 243702
||| |||||||| ||||| |||| | ||||| || || ||| | |||||||||
Sbjct 446759 AAGATGTACAACGTGGTCAACCCATTTGATTGGATGGAACTGATATCGTTGCAAGGGAAA 446700
Query 243703 ACTAACTTCTTCGAAAAGCGTGTCAGTGATTATCAA 243738
|| || |||||||| || | || | || ||||||
Sbjct 446699 ACCAATTTCTTCGAGAAAAGAGTTGGAGAGTATCAA 446664
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 1102459599031850
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