Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Gossypium_20barbadense_20[genbank_20GCA_5F001856525.1_202016-11-03] 29,751 sequences; 2,566,742,836 total letters Query= NC_009899.1 Length=344691 Score E Sequences producing significant alignments: (Bits) Value seq29212 129 1e-24 seq22586 107 4e-18 >seq29212 Length=358297 Score = 129 bits (142), Expect = 1e-24 Identities = 565/880 (64%), Gaps = 23/880 (3%) Strand=Plus/Plus Query 242869 TCTGCAT--TCCCCATCCAGTATCCGGATATGTGGGATATGTATAAGAAGGCAGTGGCAA 242926 ||||||| |||| ||||| || || | || ||||| ||||||||||| || | || Sbjct 222644 TCTGCATGTTCCCAATCCAATACCCACAGATATGGGAAATGTATAAGAAAGCCGAAGCCT 222703 Query 242927 CCTTTTGGACCACCGAGGAAGTTCCTCTGAACGCAGA-CGTCGTCGACTGGCGCGAGAAA 242985 | |||||||| ||||||||||| ||| | || | || | |||||| | || Sbjct 222704 CTTTTTGGACTGCCGAGGAAGTTGATCTCTCTTCCGATCTTCCAC-ACTGGC---AAAAT 222759 Query 242986 CTCAATGACGACGAACGTCATTTCATCAAACACATTCTAGGTTTTTTCGCAGGCTCCGAT 243045 || || | ||||||||| || ||||||| || | || | || ||||| | |||||| Sbjct 222760 CTTAACGCCGACGAACGCCACTTCATCAGTCATGTCCTTGCCTTCTTCGCCGCATCCGAT 222819 Query 243046 GGTATTGTGATGGAAAATCT-GCAGACCAACTTTAGTGTGGAAGTAACGGTTCCAGAGGC 243104 || || || | |||||||| || | | ||| | || || | | ||||| Sbjct 222820 GGCATCGTTCTAGAAAATCTCGCTGTTCG-CTTCATGAAAGAGGTCCAAATCGCGGAGGC 222878 Query 243105 ACGGCAATTTTATGCTTACCAAACATTCAACGAATCTATCCATTCTGAACAATATGCTCT 243164 || |||||||| | ||||| || ||| |||||| ||||| ||| ||| Sbjct 222879 GCGTGCATTTTATGGATTCCAAATCGCCATCGAGAATATCCACTCTGAGATGTATAGTCT 222938 Query 243165 TCTTATCGACGCGCTTATTTCAGATGAACAAGAGCGAAACGAGCTTTTCGACGCCATCGA 243224 || |||| | |||| |||| || |||| || ||| |||| | || Sbjct 222939 CCTCCTCGAAACTTATATTAAAGATTCCACCGAAAAAAACCGCCTCTTCCACGCTACTGA 222998 Query 243225 AAACATTCCGGCGGTTCATAACAAGGCAAAATGGGCTCAGAAGTGGCTAGAACCCGGTAA 243284 || | ||| || ||| || || | |||||| ||| ||| | || ||| | Sbjct 222999 AACGGTGCCGTGCGTGGCTAAAAAAGCCGATTGGGCTTTGAAATGGATCGACGGCGGCGA 223058 Query 243285 ATCATTTGCTGAGCGTCTCGTCGCCTGGGTGTGCGTTGAAGGTATTCTGTTTTCCGGGAG 243344 | | ||||| || || | |||| | | ||||| ||||| || | || ||||| || Sbjct 223059 AGCTTTTGCCGAACGGTTAATCGCTTTCGCTTGCGTAGAAGGCATATTTTTCTCCGGCAG 223118 Query 243345 TTTCTGCGCCATCTTTTGGCTGCGGAACAAAG----GTGTGATGCCTGGCCTCGGTCTGT 243400 |||||| || || |||||| | || |||| | | |||||||| | | | | Sbjct 223119 TTTCTGTGCGATATTTTGGTT----AAAAAAGCGCGGGTTAATGCCTGGATTAACTTTCT 223174 Query 243401 CTAACGAGTTCATCAGTCGCGACGAGGGCCTTCACCAACAGTTCGGTGAGCTTA-TGTAT 243459 | |||||||| ||| ||| || || || || || | || | | |||| |||| Sbjct 223175 CAAACGAGTTGATCTCTCGAGATGAAGGTCTCCATTGCGACTTTGCTT-GCTTGCTGTAC 223233 Query 243460 TCAAAGCTCCAGAACAAGCTACCATTCGAAA-CG-GTCAAACAAATCATCACAGAAGCAG 243517 || |||||| |||||| | | | | || || || ||| | | || || | Sbjct 223234 TCTCTCCTCCAGTCAAAGCTA--AGTGAAGAGCGCGTGAAGGGAATAGTGAGGGATGCGG 223291 Query 243518 TTGAAAACGAAAAGGAATTCATTTGCGACGCTATTCCATGCCGGCTTATTGGCATGAACT 243577 | || | || | ||| || | ||||||||| |||| ||| | | |||| |||||| Sbjct 223292 TGGATATAGAGAGGGAGTTTGTATGCGACGCTCTTCCCTGCGCGTTAGTTGGGATGAACG 223351 Query 243578 CTGAACTCATGGGACAGTACATCGAATTCGTAGCCGACCGCATTTTCATCGCGCTTGGTT 243637 ||| | ||| | || ||||| || ||||| || || || | || || | || | Sbjct 223352 GTGAGTTGATGAGTCAATACATTGAGTTCGTTGCGGATCGGTTGTTAGGAGCTTTAGGGT 223411 Query 243638 ATGAGAAAGTGTACAACTCCAAGAACCCCTTTGCCTTTATGGAGCTCATTTCGCTTCAAG 243697 ||| ||| ||||||| | ||||| |||| | ||||| || ||||| | |||| Sbjct 223412 ATGGCAAAATGTACAATGCGGCTAACCCTTTTGATTGGATGGAACTAATTTCATTGCAAG 223471 Query 243698 GGAAAACTAACTTCTTCGAAAAGCGTGTCAGTGATTATCA 243737 ||||||| || |||||||| ||| | || | || ||||| Sbjct 223472 GGAAAACCAATTTCTTCGAGAAGAGAGTTGGAGAGTATCA 223511 >seq22586 Length=877411 Score = 107 bits (118), Expect = 4e-18 Identities = 559/876 (64%), Gaps = 27/876 (3%) Strand=Plus/Minus Query 242875 TTCCCCATCCAGTATCCGGATATGTGGGATATGTATAAGAAGGCAGTGGCAACCTTTTGG 242934 || || ||||| || || || | ||||| ||||| ||||| || | || | |||||| Sbjct 444389 TTTCCGATCCAATACCCAGAAGTATGGGAAATGTACAAGAAAGCCGAAGCGTCGTTTTGG 444330 Query 242935 ACCACCGAGGAAGTTCCTCTGAACGCAGA-CGTCGTCGACTGGCGCGAGAAACTCAATGA 242993 ||| | |||||||| |||| | || | ||||| ||||| || | |||| | Sbjct 444329 ACCGCAGAGGAAGTCGATCTGTCTTCCGATCTTCGTC-ACTGG---GAAACTCTCACCGC 444274 Query 242994 CGACGAACGTCATTTCATCAAACACATTCTAGGTTTTTTCGCAGGCTCCGATGGTATTGT 243053 ||| || | ||| ||||| | ||| |||| | |||||||| | ||||||||| || || Sbjct 444273 CGATGAGCATCACTTCATTAGTCACGTTCTCGCCTTTTTCGCCGCCTCCGATGGCATAGT 444214 Query 243054 GATGGAAAATCT-GCAGACCAACTTTAGTGTGGAAGTAACGGTTCCAGAGGCACGGCAAT 243112 | || || || || | | || | || || | | | ||||| || | Sbjct 444213 CCTTGAGAACCTTGCTGTTCGG-TTCATGAAAGAGGTCCAGATCTCCGAGGCGCGTGCTT 444155 Query 243113 TTTATGCTTACCAAACATTCAACGAATCTATCCATTCTGAACAATATGCTCTTCTTATCG 243172 |||||| || ||||| | |||| |||||| || || || ||| ||| ||| Sbjct 444154 TTTATGGTTTCCAAATCGCTATCGAAAATATCCACTCCGAGATGTACAGTCTCCTTCTCG 444095 Query 243173 ACGCGCTTAT------TTCAGATGAACAAGAGCGAAACGAGCTTTTCGACGCCATCGAAA 243226 | | || ||| |||||| | ||| || |||||| ||||||||| | Sbjct 444094 AGACTTACATAAAAGATTCCGATGAAAA-----GAACCGT-CTTTTCCGCGCCATCGAGA 444041 Query 243227 ACATTCCGGCGGTTCATAACAAGGCAAAATGGGCTCAGAAGTGGCTAGAACCCGGTAAAT 243286 | ||| || ||| || || | |||||| ||| ||| | || ||| || Sbjct 444040 CGGTGCCGTGTGTGGCTAAAAAAGCCGAGTGGGCTATGAAATGGATCGACGGCGGAGAAA 443981 Query 243287 CATTTGCTGAGCGTCTCGTCGCCTGGGTGTGCGTTGAAGGTATTCTGTTTTCCGGGAGTT 243346 | || || || || | |||| | | ||||| || || || | || ||||| |||| Sbjct 443980 CTTTCGCCGAACGGTTAATCGCTTTTGCTTGCGTAGAGGGGATCTTTTTCTCCGGAAGTT 443921 Query 243347 TCTGCGCCATCTTTTGGCTGCGGAACAAAGGTGTGATGCCTGGCCTCGGTCTGTCTAACG 243406 |||| ||||| |||||| | || | || | ||||| || | | | || |||| Sbjct 443920 TCTGTGCCATATTTTGGTTAAAAAAGAGGGGGTTAATGCCCGGATTAACTTTCTCAAACG 443861 Query 243407 AGTTCATCAGTCGCGACGAGGGCCTTCACCAACAGTTCGGTGAGCTTA-TGTATTCAAAG 243465 |||| ||| || || || || || ||| | |||| | |||| |||| || Sbjct 443860 AGTTAATCTCACGAGATGAAGGTCTCCACTGTGATTTCGCTT-GCTTGCTGTACTCTCTC 443802 Query 243466 CTCCAGAACAAGCTACCATTCGA-AACG-GTCAAACAAATCATCACAGAAGCAGTTGAAA 243523 |||| | ||||| | | | |||| || | | || | | || || || || | Sbjct 443801 CTCCGGTCAAAGCTG--AGTGAAGAACGCGTGAGAGGGATAGTAAGGGACGCGGTGGACA 443744 Query 243524 ACGAAAAGGAATTCATTTGCGACGCTATTCCATGCCGGCTTATTGGCATGAACTCTGAAC 243583 || | ||| ||| | ||||| ||| | || ||| | | |||| |||||| || Sbjct 443743 TAGAGAGGGAGTTCGTATGCGATGCTCTGCCCTGCGCGTTGGTTGGGATGAACGGCGAGT 443684 Query 243584 TCATGGGACAGTACATCGAATTCGTAGCCGACCGCATTTTCATCGCGCTTGGTTATGAGA 243643 | ||| | ||||||||||| |||||||| || || | || ||| | || || | || Sbjct 443683 TAATGAGTCAGTACATCGAGTTCGTAGCGGATCGGTTGTTGGGAGCGTTAGGGTACG-GA 443625 Query 243644 AAG-TGTACAACTCCAAGAACCCCTTTGCCTTTATGGAGCTCATTTCGCTTCAAGGGAAA 243702 ||| |||||||| ||||| |||| | ||||| || || ||| | ||||||||| Sbjct 443624 AAGATGTACAACGTGGTCAACCCATTTGATTGGATGGAACTGATATCGTTGCAAGGGAAA 443565 Query 243703 ACTAACTTCTTCGAAAAGCGTGTCAGTGATTATCAA 243738 || || |||||||| || | || | || |||||| Sbjct 443564 ACCAATTTCTTCGAGAAAAGAGTTGGAGAGTATCAA 443529 Score = 107 bits (118), Expect = 4e-18 Identities = 559/876 (64%), Gaps = 27/876 (3%) Strand=Plus/Minus Query 242875 TTCCCCATCCAGTATCCGGATATGTGGGATATGTATAAGAAGGCAGTGGCAACCTTTTGG 242934 || || ||||| || || || | ||||| ||||| ||||| || | || | |||||| Sbjct 447524 TTTCCGATCCAATACCCAGAAGTATGGGAAATGTACAAGAAAGCCGAAGCGTCGTTTTGG 447465 Query 242935 ACCACCGAGGAAGTTCCTCTGAACGCAGA-CGTCGTCGACTGGCGCGAGAAACTCAATGA 242993 ||| | |||||||| |||| | || | ||||| ||||| || | |||| | Sbjct 447464 ACCGCAGAGGAAGTCGATCTGTCTTCCGATCTTCGTC-ACTGG---GAAACTCTCACCGC 447409 Query 242994 CGACGAACGTCATTTCATCAAACACATTCTAGGTTTTTTCGCAGGCTCCGATGGTATTGT 243053 ||| || | ||| ||||| | ||| |||| | |||||||| | ||||||||| || || Sbjct 447408 CGATGAGCATCACTTCATTAGTCACGTTCTCGCCTTTTTCGCCGCCTCCGATGGCATAGT 447349 Query 243054 GATGGAAAATCT-GCAGACCAACTTTAGTGTGGAAGTAACGGTTCCAGAGGCACGGCAAT 243112 | || || || || | | || | || || | | | ||||| || | Sbjct 447348 CCTTGAGAACCTTGCTGTTCGG-TTCATGAAAGAGGTCCAGATCTCCGAGGCGCGTGCTT 447290 Query 243113 TTTATGCTTACCAAACATTCAACGAATCTATCCATTCTGAACAATATGCTCTTCTTATCG 243172 |||||| || ||||| | |||| |||||| || || || ||| ||| ||| Sbjct 447289 TTTATGGTTTCCAAATCGCTATCGAAAATATCCACTCCGAGATGTACAGTCTCCTTCTCG 447230 Query 243173 ACGCGCTTAT------TTCAGATGAACAAGAGCGAAACGAGCTTTTCGACGCCATCGAAA 243226 | | || ||| |||||| | ||| || |||||| ||||||||| | Sbjct 447229 AGACTTACATAAAAGATTCCGATGAAAA-----GAACCGT-CTTTTCCGCGCCATCGAGA 447176 Query 243227 ACATTCCGGCGGTTCATAACAAGGCAAAATGGGCTCAGAAGTGGCTAGAACCCGGTAAAT 243286 | ||| || ||| || || | |||||| ||| ||| | || ||| || Sbjct 447175 CGGTGCCGTGTGTGGCTAAAAAAGCCGAGTGGGCTATGAAATGGATCGACGGCGGAGAAA 447116 Query 243287 CATTTGCTGAGCGTCTCGTCGCCTGGGTGTGCGTTGAAGGTATTCTGTTTTCCGGGAGTT 243346 | || || || || | |||| | | ||||| || || || | || ||||| |||| Sbjct 447115 CTTTCGCCGAACGGTTAATCGCTTTTGCTTGCGTAGAGGGGATCTTTTTCTCCGGAAGTT 447056 Query 243347 TCTGCGCCATCTTTTGGCTGCGGAACAAAGGTGTGATGCCTGGCCTCGGTCTGTCTAACG 243406 |||| ||||| |||||| | || | || | ||||| || | | | || |||| Sbjct 447055 TCTGTGCCATATTTTGGTTAAAAAAGAGGGGGTTAATGCCCGGATTAACTTTCTCAAACG 446996 Query 243407 AGTTCATCAGTCGCGACGAGGGCCTTCACCAACAGTTCGGTGAGCTTA-TGTATTCAAAG 243465 |||| ||| || || || || || ||| | |||| | |||| |||| || Sbjct 446995 AGTTAATCTCACGAGATGAAGGTCTCCACTGTGATTTCGCTT-GCTTGCTGTACTCTCTC 446937 Query 243466 CTCCAGAACAAGCTACCATTCGA-AACG-GTCAAACAAATCATCACAGAAGCAGTTGAAA 243523 |||| | ||||| | | | |||| || | | || | | || || || || | Sbjct 446936 CTCCGGTCAAAGCTG--AGTGAAGAACGCGTGAGAGGGATAGTAAGGGACGCGGTGGACA 446879 Query 243524 ACGAAAAGGAATTCATTTGCGACGCTATTCCATGCCGGCTTATTGGCATGAACTCTGAAC 243583 || | ||| ||| | ||||| ||| | || ||| | | |||| |||||| || Sbjct 446878 TAGAGAGGGAGTTCGTATGCGATGCTCTGCCCTGCGCGTTGGTTGGGATGAACGGCGAGT 446819 Query 243584 TCATGGGACAGTACATCGAATTCGTAGCCGACCGCATTTTCATCGCGCTTGGTTATGAGA 243643 | ||| | ||||||||||| |||||||| || || | || ||| | || || | || Sbjct 446818 TAATGAGTCAGTACATCGAGTTCGTAGCGGATCGGTTGTTGGGAGCGTTAGGGTACG-GA 446760 Query 243644 AAG-TGTACAACTCCAAGAACCCCTTTGCCTTTATGGAGCTCATTTCGCTTCAAGGGAAA 243702 ||| |||||||| ||||| |||| | ||||| || || ||| | ||||||||| Sbjct 446759 AAGATGTACAACGTGGTCAACCCATTTGATTGGATGGAACTGATATCGTTGCAAGGGAAA 446700 Query 243703 ACTAACTTCTTCGAAAAGCGTGTCAGTGATTATCAA 243738 || || |||||||| || | || | || |||||| Sbjct 446699 ACCAATTTCTTCGAGAAAAGAGTTGGAGAGTATCAA 446664 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1102459599031850