Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Gossypium_20barbadense_20[genbank_20GCA_5F001856525.1_202016-11-03] 29,751 sequences; 2,566,742,836 total letters Query= NC_011273.1 Length=164602 Score E Sequences producing significant alignments: (Bits) Value seq28126 89.7 5e-13 seq27049 89.7 5e-13 seq26538 89.7 5e-13 seq24276 89.7 5e-13 seq24173 89.7 5e-13 seq24046 89.7 5e-13 seq22042 89.7 5e-13 seq20413 89.7 5e-13 seq20207 89.7 5e-13 seq20155 89.7 5e-13 seq19538 89.7 5e-13 seq18414 89.7 5e-13 seq17026 89.7 5e-13 seq16829 89.7 5e-13 seq16549 89.7 5e-13 seq15837 89.7 5e-13 seq11998 89.7 5e-13 seq11851 89.7 5e-13 seq7104 89.7 5e-13 seq2730 89.7 5e-13 seq726 89.7 5e-13 seq17760 82.4 8e-11 seq1885 82.4 8e-11 >seq28126 Length=906623 Score = 89.7 bits (98), Expect = 5e-13 Identities = 64/74 (86%), Gaps = 0/74 (0%) Strand=Plus/Minus Query 92615 GCGGGGTAGAGCAGCTCGGTAGCTCGCCAGGCTCATAACCTGGAGGCCGTGGGTTCAAAT 92674 ||||| |||||||| | |||||||||| ||||||||||||| |||| | ||||||||||| Sbjct 48109 GCGGGATAGAGCAGTTTGGTAGCTCGCAAGGCTCATAACCTTGAGGTCATGGGTTCAAAT 48050 Query 92675 CCCACTCCCGCCAC 92688 ||| |||||| || Sbjct 48049 CCCGTTCCCGCAAC 48036 >seq27049 Length=322003 Score = 89.7 bits (98), Expect = 5e-13 Identities = 64/74 (86%), Gaps = 0/74 (0%) Strand=Plus/Plus Query 92615 GCGGGGTAGAGCAGCTCGGTAGCTCGCCAGGCTCATAACCTGGAGGCCGTGGGTTCAAAT 92674 ||||| |||||||| | |||||||||| ||||||||||||| |||| | ||||||||||| Sbjct 163844 GCGGGATAGAGCAGTTTGGTAGCTCGCAAGGCTCATAACCTTGAGGTCATGGGTTCAAAT 163903 Query 92675 CCCACTCCCGCCAC 92688 ||| |||||| || Sbjct 163904 CCCGTTCCCGCAAC 163917 Score = 84.2 bits (92), Expect = 2e-11 Identities = 63/74 (85%), Gaps = 0/74 (0%) Strand=Plus/Plus Query 92615 GCGGGGTAGAGCAGCTCGGTAGCTCGCCAGGCTCATAACCTGGAGGCCGTGGGTTCAAAT 92674 ||||| |||||||| | |||||||||| ||||||||||||| |||| | ||||||||||| Sbjct 164423 GCGGGATAGAGCAGTTTGGTAGCTCGCAAGGCTCATAACCTTGAGGTCATGGGTTCAAAT 164482 Query 92675 CCCACTCCCGCCAC 92688 | | |||||| || Sbjct 164483 CTCGTTCCCGCAAC 164496 >seq26538 Length=1048001 Score = 89.7 bits (98), Expect = 5e-13 Identities = 64/74 (86%), Gaps = 0/74 (0%) Strand=Plus/Plus Query 92615 GCGGGGTAGAGCAGCTCGGTAGCTCGCCAGGCTCATAACCTGGAGGCCGTGGGTTCAAAT 92674 ||||| |||||||| | |||||||||| ||||||||||||| |||| | ||||||||||| Sbjct 807114 GCGGGATAGAGCAGTTTGGTAGCTCGCAAGGCTCATAACCTTGAGGTCATGGGTTCAAAT 807173 Query 92675 CCCACTCCCGCCAC 92688 ||| |||||| || Sbjct 807174 CCCGTTCCCGCAAC 807187 >seq24276 Length=519654 Score = 89.7 bits (98), Expect = 5e-13 Identities = 64/74 (86%), Gaps = 0/74 (0%) Strand=Plus/Minus Query 92615 GCGGGGTAGAGCAGCTCGGTAGCTCGCCAGGCTCATAACCTGGAGGCCGTGGGTTCAAAT 92674 ||||| |||||||| | |||||||||| ||||||||||||| |||| | ||||||||||| Sbjct 131523 GCGGGATAGAGCAGTTTGGTAGCTCGCAAGGCTCATAACCTTGAGGTCATGGGTTCAAAT 131464 Query 92675 CCCACTCCCGCCAC 92688 ||| |||||| || Sbjct 131463 CCCGTTCCCGCAAC 131450 >seq24173 Length=154375 Score = 89.7 bits (98), Expect = 5e-13 Identities = 64/74 (86%), Gaps = 0/74 (0%) Strand=Plus/Minus Query 92615 GCGGGGTAGAGCAGCTCGGTAGCTCGCCAGGCTCATAACCTGGAGGCCGTGGGTTCAAAT 92674 ||||| |||||||| | |||||||||| ||||||||||||| |||| | ||||||||||| Sbjct 43556 GCGGGATAGAGCAGTTTGGTAGCTCGCAAGGCTCATAACCTTGAGGTCATGGGTTCAAAT 43497 Query 92675 CCCACTCCCGCCAC 92688 ||| |||||| || Sbjct 43496 CCCGTTCCCGCAAC 43483 >seq24046 Length=552354 Score = 89.7 bits (98), Expect = 5e-13 Identities = 64/74 (86%), Gaps = 0/74 (0%) Strand=Plus/Minus Query 92615 GCGGGGTAGAGCAGCTCGGTAGCTCGCCAGGCTCATAACCTGGAGGCCGTGGGTTCAAAT 92674 ||||| |||||||| | |||||||||| ||||||||||||| |||| | ||||||||||| Sbjct 439782 GCGGGATAGAGCAGTTTGGTAGCTCGCAAGGCTCATAACCTTGAGGTCATGGGTTCAAAT 439723 Query 92675 CCCACTCCCGCCAC 92688 ||| |||||| || Sbjct 439722 CCCGTTCCCGCAAC 439709 >seq22042 Length=3509 Score = 89.7 bits (98), Expect = 5e-13 Identities = 64/74 (86%), Gaps = 0/74 (0%) Strand=Plus/Minus Query 92615 GCGGGGTAGAGCAGCTCGGTAGCTCGCCAGGCTCATAACCTGGAGGCCGTGGGTTCAAAT 92674 ||||| |||||||| | |||||||||| ||||||||||||| |||| | ||||||||||| Sbjct 980 GCGGGATAGAGCAGTTTGGTAGCTCGCAAGGCTCATAACCTTGAGGTCATGGGTTCAAAT 921 Query 92675 CCCACTCCCGCCAC 92688 ||| |||||| || Sbjct 920 CCCGTTCCCGCAAC 907 >seq20413 Length=137073 Score = 89.7 bits (98), Expect = 5e-13 Identities = 64/74 (86%), Gaps = 0/74 (0%) Strand=Plus/Plus Query 92615 GCGGGGTAGAGCAGCTCGGTAGCTCGCCAGGCTCATAACCTGGAGGCCGTGGGTTCAAAT 92674 ||||| |||||||| | |||||||||| ||||||||||||| |||| | ||||||||||| Sbjct 9500 GCGGGATAGAGCAGTTTGGTAGCTCGCAAGGCTCATAACCTTGAGGTCATGGGTTCAAAT 9559 Query 92675 CCCACTCCCGCCAC 92688 ||| |||||| || Sbjct 9560 CCCGTTCCCGCAAC 9573 >seq20207 Length=15142 Score = 89.7 bits (98), Expect = 5e-13 Identities = 64/74 (86%), Gaps = 0/74 (0%) Strand=Plus/Plus Query 92615 GCGGGGTAGAGCAGCTCGGTAGCTCGCCAGGCTCATAACCTGGAGGCCGTGGGTTCAAAT 92674 ||||| |||||||| | |||||||||| ||||||||||||| |||| | ||||||||||| Sbjct 2815 GCGGGATAGAGCAGTTTGGTAGCTCGCAAGGCTCATAACCTTGAGGTCATGGGTTCAAAT 2874 Query 92675 CCCACTCCCGCCAC 92688 ||| |||||| || Sbjct 2875 CCCGTTCCCGCAAC 2888 >seq20155 Length=649718 Score = 89.7 bits (98), Expect = 5e-13 Identities = 64/74 (86%), Gaps = 0/74 (0%) Strand=Plus/Minus Query 92615 GCGGGGTAGAGCAGCTCGGTAGCTCGCCAGGCTCATAACCTGGAGGCCGTGGGTTCAAAT 92674 ||||| |||||||| | |||||||||| ||||||||||||| |||| | ||||||||||| Sbjct 113386 GCGGGATAGAGCAGTTTGGTAGCTCGCAAGGCTCATAACCTTGAGGTCATGGGTTCAAAT 113327 Query 92675 CCCACTCCCGCCAC 92688 ||| |||||| || Sbjct 113326 CCCGTTCCCGCAAC 113313 >seq19538 Length=341288 Score = 89.7 bits (98), Expect = 5e-13 Identities = 64/74 (86%), Gaps = 0/74 (0%) Strand=Plus/Minus Query 92615 GCGGGGTAGAGCAGCTCGGTAGCTCGCCAGGCTCATAACCTGGAGGCCGTGGGTTCAAAT 92674 ||||| |||||||| | |||||||||| ||||||||||||| |||| | ||||||||||| Sbjct 193525 GCGGGATAGAGCAGTTTGGTAGCTCGCAAGGCTCATAACCTTGAGGTCATGGGTTCAAAT 193466 Query 92675 CCCACTCCCGCCAC 92688 ||| |||||| || Sbjct 193465 CCCGTTCCCGCAAC 193452 >seq18414 Length=9769 Score = 89.7 bits (98), Expect = 5e-13 Identities = 64/74 (86%), Gaps = 0/74 (0%) Strand=Plus/Minus Query 92615 GCGGGGTAGAGCAGCTCGGTAGCTCGCCAGGCTCATAACCTGGAGGCCGTGGGTTCAAAT 92674 ||||| |||||||| | |||||||||| ||||||||||||| |||| | ||||||||||| Sbjct 4208 GCGGGATAGAGCAGTTTGGTAGCTCGCAAGGCTCATAACCTTGAGGTCATGGGTTCAAAT 4149 Query 92675 CCCACTCCCGCCAC 92688 ||| |||||| || Sbjct 4148 CCCGTTCCCGCAAC 4135 >seq17026 Length=9621 Score = 89.7 bits (98), Expect = 5e-13 Identities = 64/74 (86%), Gaps = 0/74 (0%) Strand=Plus/Minus Query 92615 GCGGGGTAGAGCAGCTCGGTAGCTCGCCAGGCTCATAACCTGGAGGCCGTGGGTTCAAAT 92674 ||||| |||||||| | |||||||||| ||||||||||||| |||| | ||||||||||| Sbjct 3880 GCGGGATAGAGCAGTTTGGTAGCTCGCAAGGCTCATAACCTTGAGGTCATGGGTTCAAAT 3821 Query 92675 CCCACTCCCGCCAC 92688 ||| |||||| || Sbjct 3820 CCCGTTCCCGCAAC 3807 >seq16829 Length=228052 Score = 89.7 bits (98), Expect = 5e-13 Identities = 64/74 (86%), Gaps = 0/74 (0%) Strand=Plus/Plus Query 92615 GCGGGGTAGAGCAGCTCGGTAGCTCGCCAGGCTCATAACCTGGAGGCCGTGGGTTCAAAT 92674 ||||| |||||||| | |||||||||| ||||||||||||| |||| | ||||||||||| Sbjct 148245 GCGGGATAGAGCAGTTTGGTAGCTCGCAAGGCTCATAACCTTGAGGTCATGGGTTCAAAT 148304 Query 92675 CCCACTCCCGCCAC 92688 ||| |||||| || Sbjct 148305 CCCGTTCCCGCAAC 148318 >seq16549 Length=539039 Score = 89.7 bits (98), Expect = 5e-13 Identities = 64/74 (86%), Gaps = 0/74 (0%) Strand=Plus/Minus Query 92615 GCGGGGTAGAGCAGCTCGGTAGCTCGCCAGGCTCATAACCTGGAGGCCGTGGGTTCAAAT 92674 ||||| |||||||| | |||||||||| ||||||||||||| |||| | ||||||||||| Sbjct 76797 GCGGGATAGAGCAGTTTGGTAGCTCGCAAGGCTCATAACCTTGAGGTCATGGGTTCAAAT 76738 Query 92675 CCCACTCCCGCCAC 92688 ||| |||||| || Sbjct 76737 CCCGTTCCCGCAAC 76724 >seq15837 Length=133161 Score = 89.7 bits (98), Expect = 5e-13 Identities = 64/74 (86%), Gaps = 0/74 (0%) Strand=Plus/Plus Query 92615 GCGGGGTAGAGCAGCTCGGTAGCTCGCCAGGCTCATAACCTGGAGGCCGTGGGTTCAAAT 92674 ||||| |||||||| | |||||||||| ||||||||||||| |||| | ||||||||||| Sbjct 94404 GCGGGATAGAGCAGTTTGGTAGCTCGCAAGGCTCATAACCTTGAGGTCATGGGTTCAAAT 94463 Query 92675 CCCACTCCCGCCAC 92688 ||| |||||| || Sbjct 94464 CCCGTTCCCGCAAC 94477 >seq11998 Length=845859 Score = 89.7 bits (98), Expect = 5e-13 Identities = 64/74 (86%), Gaps = 0/74 (0%) Strand=Plus/Minus Query 92615 GCGGGGTAGAGCAGCTCGGTAGCTCGCCAGGCTCATAACCTGGAGGCCGTGGGTTCAAAT 92674 ||||| |||||||| | |||||||||| ||||||||||||| |||| | ||||||||||| Sbjct 395199 GCGGGATAGAGCAGTTTGGTAGCTCGCAAGGCTCATAACCTTGAGGTCATGGGTTCAAAT 395140 Query 92675 CCCACTCCCGCCAC 92688 ||| |||||| || Sbjct 395139 CCCGTTCCCGCAAC 395126 >seq11851 Length=305145 Score = 89.7 bits (98), Expect = 5e-13 Identities = 64/74 (86%), Gaps = 0/74 (0%) Strand=Plus/Plus Query 92615 GCGGGGTAGAGCAGCTCGGTAGCTCGCCAGGCTCATAACCTGGAGGCCGTGGGTTCAAAT 92674 ||||| |||||||| | |||||||||| ||||||||||||| |||| | ||||||||||| Sbjct 30756 GCGGGATAGAGCAGTTTGGTAGCTCGCAAGGCTCATAACCTTGAGGTCATGGGTTCAAAT 30815 Query 92675 CCCACTCCCGCCAC 92688 ||| |||||| || Sbjct 30816 CCCGTTCCCGCAAC 30829 >seq7104 Length=334309 Score = 89.7 bits (98), Expect = 5e-13 Identities = 64/74 (86%), Gaps = 0/74 (0%) Strand=Plus/Plus Query 92615 GCGGGGTAGAGCAGCTCGGTAGCTCGCCAGGCTCATAACCTGGAGGCCGTGGGTTCAAAT 92674 ||||| |||||||| | |||||||||| ||||||||||||| |||| | ||||||||||| Sbjct 84550 GCGGGATAGAGCAGTTTGGTAGCTCGCAAGGCTCATAACCTTGAGGTCATGGGTTCAAAT 84609 Query 92675 CCCACTCCCGCCAC 92688 ||| |||||| || Sbjct 84610 CCCGTTCCCGCAAC 84623 >seq2730 Length=19162 Score = 89.7 bits (98), Expect = 5e-13 Identities = 64/74 (86%), Gaps = 0/74 (0%) Strand=Plus/Plus Query 92615 GCGGGGTAGAGCAGCTCGGTAGCTCGCCAGGCTCATAACCTGGAGGCCGTGGGTTCAAAT 92674 ||||| |||||||| | |||||||||| ||||||||||||| |||| | ||||||||||| Sbjct 8288 GCGGGATAGAGCAGTTTGGTAGCTCGCAAGGCTCATAACCTTGAGGTCATGGGTTCAAAT 8347 Query 92675 CCCACTCCCGCCAC 92688 ||| |||||| || Sbjct 8348 CCCGTTCCCGCAAC 8361 >seq726 Length=119937 Score = 89.7 bits (98), Expect = 5e-13 Identities = 64/74 (86%), Gaps = 0/74 (0%) Strand=Plus/Plus Query 92615 GCGGGGTAGAGCAGCTCGGTAGCTCGCCAGGCTCATAACCTGGAGGCCGTGGGTTCAAAT 92674 ||||| |||||||| | |||||||||| ||||||||||||| |||| | ||||||||||| Sbjct 103290 GCGGGATAGAGCAGTTTGGTAGCTCGCAAGGCTCATAACCTTGAGGTCATGGGTTCAAAT 103349 Query 92675 CCCACTCCCGCCAC 92688 ||| |||||| || Sbjct 103350 CCCGTTCCCGCAAC 103363 >seq17760 Length=15123 Score = 82.4 bits (90), Expect = 8e-11 Identities = 62/73 (85%), Gaps = 0/73 (0%) Strand=Plus/Plus Query 92616 CGGGGTAGAGCAGCTCGGTAGCTCGCCAGGCTCATAACCTGGAGGCCGTGGGTTCAAATC 92675 |||| || ||||| | |||||||||| ||||||||||||| |||| | |||||||||||| Sbjct 14777 CGGGATAAAGCAGTTTGGTAGCTCGCAAGGCTCATAACCTTGAGGTCATGGGTTCAAATC 14836 Query 92676 CCACTCCCGCCAC 92688 || |||||| || Sbjct 14837 CCGTTCCCGCAAC 14849 >seq1885 Length=109718 Score = 82.4 bits (90), Expect = 8e-11 Identities = 60/70 (86%), Gaps = 0/70 (0%) Strand=Plus/Minus Query 92615 GCGGGGTAGAGCAGCTCGGTAGCTCGCCAGGCTCATAACCTGGAGGCCGTGGGTTCAAAT 92674 ||||| |||||||| | |||||||||| ||||||||||||| |||| | ||||||||||| Sbjct 80576 GCGGGATAGAGCAGTTTGGTAGCTCGCAAGGCTCATAACCTTGAGGTCATGGGTTCAAAT 80517 Query 92675 CCCACTCCCG 92684 || ||||| Sbjct 80516 CCTGTTCCCG 80507 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 526402564637520