Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Gossypium_20barbadense_20[genbank_20GCA_5F001856525.1_202016-11-03]
29,751 sequences; 2,566,742,836 total letters
Query= NC_011273.1
Length=164602
Score E
Sequences producing significant alignments: (Bits) Value
seq28126 89.7 5e-13
seq27049 89.7 5e-13
seq26538 89.7 5e-13
seq24276 89.7 5e-13
seq24173 89.7 5e-13
seq24046 89.7 5e-13
seq22042 89.7 5e-13
seq20413 89.7 5e-13
seq20207 89.7 5e-13
seq20155 89.7 5e-13
seq19538 89.7 5e-13
seq18414 89.7 5e-13
seq17026 89.7 5e-13
seq16829 89.7 5e-13
seq16549 89.7 5e-13
seq15837 89.7 5e-13
seq11998 89.7 5e-13
seq11851 89.7 5e-13
seq7104 89.7 5e-13
seq2730 89.7 5e-13
seq726 89.7 5e-13
seq17760 82.4 8e-11
seq1885 82.4 8e-11
>seq28126
Length=906623
Score = 89.7 bits (98), Expect = 5e-13
Identities = 64/74 (86%), Gaps = 0/74 (0%)
Strand=Plus/Minus
Query 92615 GCGGGGTAGAGCAGCTCGGTAGCTCGCCAGGCTCATAACCTGGAGGCCGTGGGTTCAAAT 92674
||||| |||||||| | |||||||||| ||||||||||||| |||| | |||||||||||
Sbjct 48109 GCGGGATAGAGCAGTTTGGTAGCTCGCAAGGCTCATAACCTTGAGGTCATGGGTTCAAAT 48050
Query 92675 CCCACTCCCGCCAC 92688
||| |||||| ||
Sbjct 48049 CCCGTTCCCGCAAC 48036
>seq27049
Length=322003
Score = 89.7 bits (98), Expect = 5e-13
Identities = 64/74 (86%), Gaps = 0/74 (0%)
Strand=Plus/Plus
Query 92615 GCGGGGTAGAGCAGCTCGGTAGCTCGCCAGGCTCATAACCTGGAGGCCGTGGGTTCAAAT 92674
||||| |||||||| | |||||||||| ||||||||||||| |||| | |||||||||||
Sbjct 163844 GCGGGATAGAGCAGTTTGGTAGCTCGCAAGGCTCATAACCTTGAGGTCATGGGTTCAAAT 163903
Query 92675 CCCACTCCCGCCAC 92688
||| |||||| ||
Sbjct 163904 CCCGTTCCCGCAAC 163917
Score = 84.2 bits (92), Expect = 2e-11
Identities = 63/74 (85%), Gaps = 0/74 (0%)
Strand=Plus/Plus
Query 92615 GCGGGGTAGAGCAGCTCGGTAGCTCGCCAGGCTCATAACCTGGAGGCCGTGGGTTCAAAT 92674
||||| |||||||| | |||||||||| ||||||||||||| |||| | |||||||||||
Sbjct 164423 GCGGGATAGAGCAGTTTGGTAGCTCGCAAGGCTCATAACCTTGAGGTCATGGGTTCAAAT 164482
Query 92675 CCCACTCCCGCCAC 92688
| | |||||| ||
Sbjct 164483 CTCGTTCCCGCAAC 164496
>seq26538
Length=1048001
Score = 89.7 bits (98), Expect = 5e-13
Identities = 64/74 (86%), Gaps = 0/74 (0%)
Strand=Plus/Plus
Query 92615 GCGGGGTAGAGCAGCTCGGTAGCTCGCCAGGCTCATAACCTGGAGGCCGTGGGTTCAAAT 92674
||||| |||||||| | |||||||||| ||||||||||||| |||| | |||||||||||
Sbjct 807114 GCGGGATAGAGCAGTTTGGTAGCTCGCAAGGCTCATAACCTTGAGGTCATGGGTTCAAAT 807173
Query 92675 CCCACTCCCGCCAC 92688
||| |||||| ||
Sbjct 807174 CCCGTTCCCGCAAC 807187
>seq24276
Length=519654
Score = 89.7 bits (98), Expect = 5e-13
Identities = 64/74 (86%), Gaps = 0/74 (0%)
Strand=Plus/Minus
Query 92615 GCGGGGTAGAGCAGCTCGGTAGCTCGCCAGGCTCATAACCTGGAGGCCGTGGGTTCAAAT 92674
||||| |||||||| | |||||||||| ||||||||||||| |||| | |||||||||||
Sbjct 131523 GCGGGATAGAGCAGTTTGGTAGCTCGCAAGGCTCATAACCTTGAGGTCATGGGTTCAAAT 131464
Query 92675 CCCACTCCCGCCAC 92688
||| |||||| ||
Sbjct 131463 CCCGTTCCCGCAAC 131450
>seq24173
Length=154375
Score = 89.7 bits (98), Expect = 5e-13
Identities = 64/74 (86%), Gaps = 0/74 (0%)
Strand=Plus/Minus
Query 92615 GCGGGGTAGAGCAGCTCGGTAGCTCGCCAGGCTCATAACCTGGAGGCCGTGGGTTCAAAT 92674
||||| |||||||| | |||||||||| ||||||||||||| |||| | |||||||||||
Sbjct 43556 GCGGGATAGAGCAGTTTGGTAGCTCGCAAGGCTCATAACCTTGAGGTCATGGGTTCAAAT 43497
Query 92675 CCCACTCCCGCCAC 92688
||| |||||| ||
Sbjct 43496 CCCGTTCCCGCAAC 43483
>seq24046
Length=552354
Score = 89.7 bits (98), Expect = 5e-13
Identities = 64/74 (86%), Gaps = 0/74 (0%)
Strand=Plus/Minus
Query 92615 GCGGGGTAGAGCAGCTCGGTAGCTCGCCAGGCTCATAACCTGGAGGCCGTGGGTTCAAAT 92674
||||| |||||||| | |||||||||| ||||||||||||| |||| | |||||||||||
Sbjct 439782 GCGGGATAGAGCAGTTTGGTAGCTCGCAAGGCTCATAACCTTGAGGTCATGGGTTCAAAT 439723
Query 92675 CCCACTCCCGCCAC 92688
||| |||||| ||
Sbjct 439722 CCCGTTCCCGCAAC 439709
>seq22042
Length=3509
Score = 89.7 bits (98), Expect = 5e-13
Identities = 64/74 (86%), Gaps = 0/74 (0%)
Strand=Plus/Minus
Query 92615 GCGGGGTAGAGCAGCTCGGTAGCTCGCCAGGCTCATAACCTGGAGGCCGTGGGTTCAAAT 92674
||||| |||||||| | |||||||||| ||||||||||||| |||| | |||||||||||
Sbjct 980 GCGGGATAGAGCAGTTTGGTAGCTCGCAAGGCTCATAACCTTGAGGTCATGGGTTCAAAT 921
Query 92675 CCCACTCCCGCCAC 92688
||| |||||| ||
Sbjct 920 CCCGTTCCCGCAAC 907
>seq20413
Length=137073
Score = 89.7 bits (98), Expect = 5e-13
Identities = 64/74 (86%), Gaps = 0/74 (0%)
Strand=Plus/Plus
Query 92615 GCGGGGTAGAGCAGCTCGGTAGCTCGCCAGGCTCATAACCTGGAGGCCGTGGGTTCAAAT 92674
||||| |||||||| | |||||||||| ||||||||||||| |||| | |||||||||||
Sbjct 9500 GCGGGATAGAGCAGTTTGGTAGCTCGCAAGGCTCATAACCTTGAGGTCATGGGTTCAAAT 9559
Query 92675 CCCACTCCCGCCAC 92688
||| |||||| ||
Sbjct 9560 CCCGTTCCCGCAAC 9573
>seq20207
Length=15142
Score = 89.7 bits (98), Expect = 5e-13
Identities = 64/74 (86%), Gaps = 0/74 (0%)
Strand=Plus/Plus
Query 92615 GCGGGGTAGAGCAGCTCGGTAGCTCGCCAGGCTCATAACCTGGAGGCCGTGGGTTCAAAT 92674
||||| |||||||| | |||||||||| ||||||||||||| |||| | |||||||||||
Sbjct 2815 GCGGGATAGAGCAGTTTGGTAGCTCGCAAGGCTCATAACCTTGAGGTCATGGGTTCAAAT 2874
Query 92675 CCCACTCCCGCCAC 92688
||| |||||| ||
Sbjct 2875 CCCGTTCCCGCAAC 2888
>seq20155
Length=649718
Score = 89.7 bits (98), Expect = 5e-13
Identities = 64/74 (86%), Gaps = 0/74 (0%)
Strand=Plus/Minus
Query 92615 GCGGGGTAGAGCAGCTCGGTAGCTCGCCAGGCTCATAACCTGGAGGCCGTGGGTTCAAAT 92674
||||| |||||||| | |||||||||| ||||||||||||| |||| | |||||||||||
Sbjct 113386 GCGGGATAGAGCAGTTTGGTAGCTCGCAAGGCTCATAACCTTGAGGTCATGGGTTCAAAT 113327
Query 92675 CCCACTCCCGCCAC 92688
||| |||||| ||
Sbjct 113326 CCCGTTCCCGCAAC 113313
>seq19538
Length=341288
Score = 89.7 bits (98), Expect = 5e-13
Identities = 64/74 (86%), Gaps = 0/74 (0%)
Strand=Plus/Minus
Query 92615 GCGGGGTAGAGCAGCTCGGTAGCTCGCCAGGCTCATAACCTGGAGGCCGTGGGTTCAAAT 92674
||||| |||||||| | |||||||||| ||||||||||||| |||| | |||||||||||
Sbjct 193525 GCGGGATAGAGCAGTTTGGTAGCTCGCAAGGCTCATAACCTTGAGGTCATGGGTTCAAAT 193466
Query 92675 CCCACTCCCGCCAC 92688
||| |||||| ||
Sbjct 193465 CCCGTTCCCGCAAC 193452
>seq18414
Length=9769
Score = 89.7 bits (98), Expect = 5e-13
Identities = 64/74 (86%), Gaps = 0/74 (0%)
Strand=Plus/Minus
Query 92615 GCGGGGTAGAGCAGCTCGGTAGCTCGCCAGGCTCATAACCTGGAGGCCGTGGGTTCAAAT 92674
||||| |||||||| | |||||||||| ||||||||||||| |||| | |||||||||||
Sbjct 4208 GCGGGATAGAGCAGTTTGGTAGCTCGCAAGGCTCATAACCTTGAGGTCATGGGTTCAAAT 4149
Query 92675 CCCACTCCCGCCAC 92688
||| |||||| ||
Sbjct 4148 CCCGTTCCCGCAAC 4135
>seq17026
Length=9621
Score = 89.7 bits (98), Expect = 5e-13
Identities = 64/74 (86%), Gaps = 0/74 (0%)
Strand=Plus/Minus
Query 92615 GCGGGGTAGAGCAGCTCGGTAGCTCGCCAGGCTCATAACCTGGAGGCCGTGGGTTCAAAT 92674
||||| |||||||| | |||||||||| ||||||||||||| |||| | |||||||||||
Sbjct 3880 GCGGGATAGAGCAGTTTGGTAGCTCGCAAGGCTCATAACCTTGAGGTCATGGGTTCAAAT 3821
Query 92675 CCCACTCCCGCCAC 92688
||| |||||| ||
Sbjct 3820 CCCGTTCCCGCAAC 3807
>seq16829
Length=228052
Score = 89.7 bits (98), Expect = 5e-13
Identities = 64/74 (86%), Gaps = 0/74 (0%)
Strand=Plus/Plus
Query 92615 GCGGGGTAGAGCAGCTCGGTAGCTCGCCAGGCTCATAACCTGGAGGCCGTGGGTTCAAAT 92674
||||| |||||||| | |||||||||| ||||||||||||| |||| | |||||||||||
Sbjct 148245 GCGGGATAGAGCAGTTTGGTAGCTCGCAAGGCTCATAACCTTGAGGTCATGGGTTCAAAT 148304
Query 92675 CCCACTCCCGCCAC 92688
||| |||||| ||
Sbjct 148305 CCCGTTCCCGCAAC 148318
>seq16549
Length=539039
Score = 89.7 bits (98), Expect = 5e-13
Identities = 64/74 (86%), Gaps = 0/74 (0%)
Strand=Plus/Minus
Query 92615 GCGGGGTAGAGCAGCTCGGTAGCTCGCCAGGCTCATAACCTGGAGGCCGTGGGTTCAAAT 92674
||||| |||||||| | |||||||||| ||||||||||||| |||| | |||||||||||
Sbjct 76797 GCGGGATAGAGCAGTTTGGTAGCTCGCAAGGCTCATAACCTTGAGGTCATGGGTTCAAAT 76738
Query 92675 CCCACTCCCGCCAC 92688
||| |||||| ||
Sbjct 76737 CCCGTTCCCGCAAC 76724
>seq15837
Length=133161
Score = 89.7 bits (98), Expect = 5e-13
Identities = 64/74 (86%), Gaps = 0/74 (0%)
Strand=Plus/Plus
Query 92615 GCGGGGTAGAGCAGCTCGGTAGCTCGCCAGGCTCATAACCTGGAGGCCGTGGGTTCAAAT 92674
||||| |||||||| | |||||||||| ||||||||||||| |||| | |||||||||||
Sbjct 94404 GCGGGATAGAGCAGTTTGGTAGCTCGCAAGGCTCATAACCTTGAGGTCATGGGTTCAAAT 94463
Query 92675 CCCACTCCCGCCAC 92688
||| |||||| ||
Sbjct 94464 CCCGTTCCCGCAAC 94477
>seq11998
Length=845859
Score = 89.7 bits (98), Expect = 5e-13
Identities = 64/74 (86%), Gaps = 0/74 (0%)
Strand=Plus/Minus
Query 92615 GCGGGGTAGAGCAGCTCGGTAGCTCGCCAGGCTCATAACCTGGAGGCCGTGGGTTCAAAT 92674
||||| |||||||| | |||||||||| ||||||||||||| |||| | |||||||||||
Sbjct 395199 GCGGGATAGAGCAGTTTGGTAGCTCGCAAGGCTCATAACCTTGAGGTCATGGGTTCAAAT 395140
Query 92675 CCCACTCCCGCCAC 92688
||| |||||| ||
Sbjct 395139 CCCGTTCCCGCAAC 395126
>seq11851
Length=305145
Score = 89.7 bits (98), Expect = 5e-13
Identities = 64/74 (86%), Gaps = 0/74 (0%)
Strand=Plus/Plus
Query 92615 GCGGGGTAGAGCAGCTCGGTAGCTCGCCAGGCTCATAACCTGGAGGCCGTGGGTTCAAAT 92674
||||| |||||||| | |||||||||| ||||||||||||| |||| | |||||||||||
Sbjct 30756 GCGGGATAGAGCAGTTTGGTAGCTCGCAAGGCTCATAACCTTGAGGTCATGGGTTCAAAT 30815
Query 92675 CCCACTCCCGCCAC 92688
||| |||||| ||
Sbjct 30816 CCCGTTCCCGCAAC 30829
>seq7104
Length=334309
Score = 89.7 bits (98), Expect = 5e-13
Identities = 64/74 (86%), Gaps = 0/74 (0%)
Strand=Plus/Plus
Query 92615 GCGGGGTAGAGCAGCTCGGTAGCTCGCCAGGCTCATAACCTGGAGGCCGTGGGTTCAAAT 92674
||||| |||||||| | |||||||||| ||||||||||||| |||| | |||||||||||
Sbjct 84550 GCGGGATAGAGCAGTTTGGTAGCTCGCAAGGCTCATAACCTTGAGGTCATGGGTTCAAAT 84609
Query 92675 CCCACTCCCGCCAC 92688
||| |||||| ||
Sbjct 84610 CCCGTTCCCGCAAC 84623
>seq2730
Length=19162
Score = 89.7 bits (98), Expect = 5e-13
Identities = 64/74 (86%), Gaps = 0/74 (0%)
Strand=Plus/Plus
Query 92615 GCGGGGTAGAGCAGCTCGGTAGCTCGCCAGGCTCATAACCTGGAGGCCGTGGGTTCAAAT 92674
||||| |||||||| | |||||||||| ||||||||||||| |||| | |||||||||||
Sbjct 8288 GCGGGATAGAGCAGTTTGGTAGCTCGCAAGGCTCATAACCTTGAGGTCATGGGTTCAAAT 8347
Query 92675 CCCACTCCCGCCAC 92688
||| |||||| ||
Sbjct 8348 CCCGTTCCCGCAAC 8361
>seq726
Length=119937
Score = 89.7 bits (98), Expect = 5e-13
Identities = 64/74 (86%), Gaps = 0/74 (0%)
Strand=Plus/Plus
Query 92615 GCGGGGTAGAGCAGCTCGGTAGCTCGCCAGGCTCATAACCTGGAGGCCGTGGGTTCAAAT 92674
||||| |||||||| | |||||||||| ||||||||||||| |||| | |||||||||||
Sbjct 103290 GCGGGATAGAGCAGTTTGGTAGCTCGCAAGGCTCATAACCTTGAGGTCATGGGTTCAAAT 103349
Query 92675 CCCACTCCCGCCAC 92688
||| |||||| ||
Sbjct 103350 CCCGTTCCCGCAAC 103363
>seq17760
Length=15123
Score = 82.4 bits (90), Expect = 8e-11
Identities = 62/73 (85%), Gaps = 0/73 (0%)
Strand=Plus/Plus
Query 92616 CGGGGTAGAGCAGCTCGGTAGCTCGCCAGGCTCATAACCTGGAGGCCGTGGGTTCAAATC 92675
|||| || ||||| | |||||||||| ||||||||||||| |||| | ||||||||||||
Sbjct 14777 CGGGATAAAGCAGTTTGGTAGCTCGCAAGGCTCATAACCTTGAGGTCATGGGTTCAAATC 14836
Query 92676 CCACTCCCGCCAC 92688
|| |||||| ||
Sbjct 14837 CCGTTCCCGCAAC 14849
>seq1885
Length=109718
Score = 82.4 bits (90), Expect = 8e-11
Identities = 60/70 (86%), Gaps = 0/70 (0%)
Strand=Plus/Minus
Query 92615 GCGGGGTAGAGCAGCTCGGTAGCTCGCCAGGCTCATAACCTGGAGGCCGTGGGTTCAAAT 92674
||||| |||||||| | |||||||||| ||||||||||||| |||| | |||||||||||
Sbjct 80576 GCGGGATAGAGCAGTTTGGTAGCTCGCAAGGCTCATAACCTTGAGGTCATGGGTTCAAAT 80517
Query 92675 CCCACTCCCG 92684
|| |||||
Sbjct 80516 CCTGTTCCCG 80507
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 526402564637520
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |