Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Gossypium_20barbadense_20[genbank_20GCA_5F001856525.1_202016-11-03]
29,751 sequences; 2,566,742,836 total letters
Query= NC_013797.1
Length=108592
Score E
Sequences producing significant alignments: (Bits) Value
seq8609 107 1e-18
seq2343 107 1e-18
seq9953 102 6e-17
seq13178 95.1 8e-15
seq25104 87.8 1e-12
seq10033 87.8 1e-12
seq5610 87.8 1e-12
seq2874 87.8 1e-12
seq481 87.8 1e-12
seq6889 86.0 4e-12
>seq8609
Length=114046
Score = 107 bits (118), Expect = 1e-18
Identities = 160/227 (70%), Gaps = 0/227 (0%)
Strand=Plus/Minus
Query 39493 CCGCCTCGCAAACGCAGTACCAAATGCAAAGTGCTTTCTTTTTGTATATTATAATCGGCC 39552
|| || || | ||| || || | || | |||| || ||||| ||||| ||||| |||
Sbjct 21387 CCACCACGAAGACGAAGAACAAGGTGAAGAGTGGACTCCTTTTGAATATTGTAATCAGCC 21328
Query 39553 AAAACGCGTTCATCGTCCAATTGTTTCCCGCCAAAAATTAAACGCTGCTGATCCGAGGGT 39612
||| | | |||| |||| |||||||| ||||||| || | |||||||| | ||
Sbjct 21327 AAAGTCCTTCCATCTTCCAGCTGTTTCCCAGCAAAAATCAACCTTTGCTGATCTGGTGGA 21268
Query 39613 ACGCCTTCTTTGTCGCATATTTTTTGTTTAATCGTCGCTACTGTGTCTGCGCTTTCCACG 39672
| ||||||||||| || || ||| | | | | || || | ||| |||||
Sbjct 21267 ATTCCTTCTTTGTCCTGAATCTTCGCTTTCACGTTATCAATCGTATCCGAGCTCTCCACT 21208
Query 39673 TCCAAAGTAATTGTTTTACCCGTTAAAGTTTTTACGAAGATCTGCAT 39719
|| |||||||| || ||||| || ||||| || ||||||||||||||
Sbjct 21207 TCTAAAGTAATGGTCTTACCGGTCAAAGTCTTGACGAAGATCTGCAT 21161
>seq2343
Length=47720
Score = 107 bits (118), Expect = 1e-18
Identities = 160/227 (70%), Gaps = 0/227 (0%)
Strand=Plus/Minus
Query 39493 CCGCCTCGCAAACGCAGTACCAAATGCAAAGTGCTTTCTTTTTGTATATTATAATCGGCC 39552
|| || || | ||| || || | || | |||| || ||||| ||||| ||||| |||
Sbjct 23810 CCACCACGAAGACGAAGAACAAGGTGAAGAGTGGACTCCTTTTGAATATTGTAATCAGCC 23751
Query 39553 AAAACGCGTTCATCGTCCAATTGTTTCCCGCCAAAAATTAAACGCTGCTGATCCGAGGGT 39612
||| | | | || |||| ||||||||| ||||||| || | |||||||| | ||
Sbjct 23750 AAAGTCCTTCCGTCTTCCAGTTGTTTCCCAGCAAAAATCAACCTTTGCTGATCTGGTGGA 23691
Query 39613 ACGCCTTCTTTGTCGCATATTTTTTGTTTAATCGTCGCTACTGTGTCTGCGCTTTCCACG 39672
| ||||||||||| || || ||| | | | | || || | ||| |||||
Sbjct 23690 ATTCCTTCTTTGTCCTGAATCTTCGCTTTCACGTTATCAATCGTATCCGAGCTCTCCACT 23631
Query 39673 TCCAAAGTAATTGTTTTACCCGTTAAAGTTTTTACGAAGATCTGCAT 39719
|| |||||||| || ||||| || ||||| || ||||||||||||||
Sbjct 23630 TCTAAAGTAATCGTCTTACCGGTCAAAGTCTTGACGAAGATCTGCAT 23584
>seq9953
Length=604776
Score = 102 bits (112), Expect = 6e-17
Identities = 161/229 (70%), Gaps = 4/229 (2%)
Strand=Plus/Plus
Query 39493 CCGCCTCGCAAACGCAGTACCAAATGCAAAGTGCTTTCTTTTTGTATATTATAATCGGCC 39552
|| || || | ||||| || | || | |||| ||| || || ||||| ||||| |||
Sbjct 353500 CCACCCCGAAGACGCAAGACAAGGTGGAGAGTGGATTCCTTCTGAATATTGTAATCAGCC 353559
Query 39553 AAAACGCGTTCATCGTCCAATTGTTTCCCGCCAAAAATTAAACGCTGCTGATCCGAGGGT 39612
||| | | |||| |||||||||||||| | ||||| || | |||||||| | ||
Sbjct 353560 AAAGTCCTTCCATCTTCCAATTGTTTCCCAGCGAAAATCAACCTTTGCTGATCTGGTGGA 353619
Query 39613 ACGCCTTCTTTGTCGCATATTTTTTGTTTA--ATCGTCGCTACTGTGTCTGCGCTTTCCA 39670
| ||||||||||| || || ||| || |||| | || || | || ||||
Sbjct 353620 ATCCCTTCTTTGTCCTGAATCTTCGCCTTAACATTGTCG--ATCGTATCGGAACTCTCCA 353677
Query 39671 CGTCCAAAGTAATTGTTTTACCCGTTAAAGTTTTTACGAAGATCTGCAT 39719
| |||||||| || ||||| || || || || || ||||| ||||||||
Sbjct 353678 CCTCCAAAGTTATGGTTTTCCCAGTCAACGTCTTGACGAAAATCTGCAT 353726
Score = 102 bits (112), Expect = 6e-17
Identities = 161/229 (70%), Gaps = 4/229 (2%)
Strand=Plus/Plus
Query 39493 CCGCCTCGCAAACGCAGTACCAAATGCAAAGTGCTTTCTTTTTGTATATTATAATCGGCC 39552
|| || || | ||||| || | || | |||| ||| || || ||||| ||||| |||
Sbjct 354626 CCACCCCGAAGACGCAAGACAAGGTGGAGAGTGGATTCCTTCTGAATATTGTAATCAGCC 354685
Query 39553 AAAACGCGTTCATCGTCCAATTGTTTCCCGCCAAAAATTAAACGCTGCTGATCCGAGGGT 39612
||| | | |||| |||||||||||||| | ||||| || | |||||||| | ||
Sbjct 354686 AAAGTCCTTCCATCTTCCAATTGTTTCCCAGCGAAAATCAACCTTTGCTGATCTGGTGGA 354745
Query 39613 ACGCCTTCTTTGTCGCATATTTTTTGTTTA--ATCGTCGCTACTGTGTCTGCGCTTTCCA 39670
| ||||||||||| || || ||| || |||| | || || | || ||||
Sbjct 354746 ATTCCTTCTTTGTCCTGAATCTTCGCCTTAACATTGTCG--ATCGTATCGGAACTCTCCA 354803
Query 39671 CGTCCAAAGTAATTGTTTTACCCGTTAAAGTTTTTACGAAGATCTGCAT 39719
| |||||||| || ||||| || || || || || ||||| ||||||||
Sbjct 354804 CCTCCAAAGTTATGGTTTTCCCAGTCAACGTCTTGACGAAAATCTGCAT 354852
Score = 96.9 bits (106), Expect = 2e-15
Identities = 152/215 (71%), Gaps = 2/215 (1%)
Strand=Plus/Plus
Query 39507 CAGTACCAAATGCAAAGTGCTTTCTTTTTGTATATTATAATCGGCCAAAACGCGTTCATC 39566
|| ||||||||| | ||| || || || || || ||||||||||| ||| | ||
Sbjct 354868 CAATACCAAATGGAGGGTGGACTCCTTCTGGATGTTGTAATCGGCCAAGGTGCGACCGTC 354927
Query 39567 GTCCAATTGTTTCCCGCCAAAAATTAAACGCTGCTGATCCGAGGGTACGCCTTCTTTGTC 39626
|| | |||||||||| |||| || | | ||||| || | || | |||||| |||||
Sbjct 354928 CTCGAGTTGTTTCCCGGCAAATATGAGCCTTTGCTGGTCTGGTGGGATGCCTTCCTTGTC 354987
Query 39627 GCATATTTTTTGTTTAATCGTCGCTACTG-TGTCTGCGCTTTCCACGTCCAAAGTAATTG 39685
|| ||| || | ||| | | || |||| | |||||| || |||||||| || |
Sbjct 354988 TTGGATCTTTGCCTTGA-CGTTGTCAATGGTGTCAGAGCTTTCGACTTCCAAAGTTATGG 355046
Query 39686 TTTTACCCGTTAAAGTTTTTACGAAGATCTGCATG 39720
| || || || | ||||| |||||||||||||||
Sbjct 355047 TCTTGCCGGTCAGGGTTTTGACGAAGATCTGCATG 355081
Score = 87.8 bits (96), Expect = 1e-12
Identities = 159/230 (69%), Gaps = 2/230 (1%)
Strand=Plus/Plus
Query 39492 GCCGCCTCGCAAACGCAGTACCAAATGCAAAGTGCTTTCTTTTTGTATATTATAATCGGC 39551
||| || || | ||| || || | ||| | ||| || || || || || ||||||||
Sbjct 355081 GCCACCACGTAGACGGAGGACGAGATGGAGGGTGGACTCCTTCTGGATGTTGTAATCGGC 355140
Query 39552 CAAAACGCGTTCATCGTCCAATTGTTTCCCGCCAAAAATTAAACGCTGCTGATCCGAGGG 39611
||| ||| | || || | |||||||||| |||| || | | ||||| || | ||
Sbjct 355141 CAAGGTGCGACCGTCCTCGAGTTGTTTCCCGGCAAAGATGAGCCTTTGCTGGTCTGGTGG 355200
Query 39612 TACGCCTTCTTTGTCGCATATTTTTTGTTTAATCGTCGCTACTG-TGTCTGCGCTTTCCA 39670
| |||||| ||||| || || || | ||| | | || |||| | |||||| |
Sbjct 355201 GATGCCTTCCTTGTCTTGGATCTTGGCCTTGA-CGTTGTCAATGGTGTCAGAGCTTTCGA 355259
Query 39671 CGTCCAAAGTAATTGTTTTACCCGTTAAAGTTTTTACGAAGATCTGCATG 39720
| |||||||| || || || || || | ||||| |||||||||||||||
Sbjct 355260 CTTCCAAAGTTATGGTCTTGCCGGTCAGGGTTTTGACGAAGATCTGCATG 355309
Score = 82.4 bits (90), Expect = 5e-11
Identities = 157/229 (69%), Gaps = 2/229 (1%)
Strand=Plus/Plus
Query 39492 GCCGCCTCGCAAACGCAGTACCAAATGCAAAGTGCTTTCTTTTTGTATATTATAATCGGC 39551
||| || || | ||| || || | ||| | ||| || || || || || ||||||||
Sbjct 355309 GCCACCACGTAGACGGAGGACGAGATGGAGGGTGGACTCCTTCTGGATGTTGTAATCGGC 355368
Query 39552 CAAAACGCGTTCATCGTCCAATTGTTTCCCGCCAAAAATTAAACGCTGCTGATCCGAGGG 39611
||| ||| | || || | |||||||||| |||| || | | ||||| || | ||
Sbjct 355369 CAAGGTGCGACCGTCCTCGAGTTGTTTCCCGGCAAAGATGAGCCTTTGCTGGTCTGGTGG 355428
Query 39612 TACGCCTTCTTTGTCGCATATTTTTTGTTTAATCGTCG-CTACTGTGTCTGCGCTTTCCA 39670
| |||||| ||||| || || || | ||| | | | ||||| | |||||| |
Sbjct 355429 GATGCCTTCCTTGTCTTGGATCTTGGCCTTGA-CGTTGTCAATGGTGTCAGAGCTTTCGA 355487
Query 39671 CGTCCAAAGTAATTGTTTTACCCGTTAAAGTTTTTACGAAGATCTGCAT 39719
| |||||||| || || || || || | || || ||||||||||||||
Sbjct 355488 CTTCCAAAGTTATGGTCTTGCCGGTCAGGGTCTTAACGAAGATCTGCAT 355536
>seq13178
Length=14983
Score = 95.1 bits (104), Expect = 8e-15
Identities = 160/230 (70%), Gaps = 4/230 (2%)
Strand=Plus/Minus
Query 39492 GCCGCCTCGCAAACGCAGTACCAAATGCAAAGTGCTTTCTTTTTGTATATTATAATCGGC 39551
||| || || | ||| || || | || | ||| ||| || || ||||||||||||||
Sbjct 12202 GCCCCCGCGAAGACGGAGGACGAGGTGGAGGGTGGATTCCTTCTGGATATTATAATCGGC 12143
Query 39552 CAAAACGCGTTCATCGTCCAATTGTTTCCCGCCAAAAATTAAACGCTGCTGATCCGAGGG 39611
||| || |||| || | ||||| ||| | || || | ||||||||| || | ||
Sbjct 12142 CAAGGTACGGCCATCTTCGAGCTGTTTGCCGGCGAAGATGAGACGCTGCTGGTCTGGTGG 12083
Query 39612 TACGCCTTCTTTGTCGCATATTTTTTGTTT--AATCGTCGCTACTGTGTCTGCGCTTTCC 39669
| |||||| ||||| ||||| || || |||| | ||||| | ||| ||
Sbjct 12082 GATGCCTTCCTTGTCTTGGATTTTAGACTTGACATTGTCG--ATGGTGTCGGAGCTCTCG 12025
Query 39670 ACGTCCAAAGTAATTGTTTTACCCGTTAAAGTTTTTACGAAGATCTGCAT 39719
|| || | || || || ||||| ||||| ||||| ||||||||||||||
Sbjct 12024 ACTTCGAGGGTGATGGTCTTACCGGTTAAGGTTTTGACGAAGATCTGCAT 11975
>seq25104
Length=148940
Score = 87.8 bits (96), Expect = 1e-12
Identities = 149/216 (69%), Gaps = 0/216 (0%)
Strand=Plus/Minus
Query 39505 CGCAGTACCAAATGCAAAGTGCTTTCTTTTTGTATATTATAATCGGCCAAAACGCGTTCA 39564
|| || |||||||| | ||| || || || |||||||||||||| | | | | ||
Sbjct 36290 CGGAGAACCAAATGGAGAGTAGACTCCTTCTGGATATTATAATCGGCAAGAGTCCTTCCA 36231
Query 39565 TCGTCCAATTGTTTCCCGCCAAAAATTAAACGCTGCTGATCCGAGGGTACGCCTTCTTTG 39624
|| || | |||||| || ||||||| || | || || || | || | |||||||||
Sbjct 36230 TCTTCAAGTTGTTTTCCAGCAAAAATCAATCTTTGTTGGTCTGGTGGGATTCCTTCTTTG 36171
Query 39625 TCGCATATTTTTTGTTTAATCGTCGCTACTGTGTCTGCGCTTTCCACGTCCAAAGTAATT 39684
|| || || ||| | | | | || || | ||| ||||| ||||| ||||||
Sbjct 36170 TCCTGAATCTTGGCTTTCACATTATCAATGGTATCCGAGCTCTCCACCTCCAAGGTAATT 36111
Query 39685 GTTTTACCCGTTAAAGTTTTTACGAAGATCTGCATG 39720
|| || || || | |||||| || ||||| ||||||
Sbjct 36110 GTCTTTCCAGTGAGAGTTTTGACAAAGATTTGCATG 36075
>seq10033
Length=52146
Score = 87.8 bits (96), Expect = 1e-12
Identities = 150/215 (70%), Gaps = 2/215 (1%)
Strand=Plus/Minus
Query 39507 CAGTACCAAATGCAAAGTGCTTTCTTTTTGTATATTATAATCGGCCAAAACGCGTTCATC 39566
|| ||||||||| | || || || || || || ||||||||||| ||| | ||
Sbjct 52101 CAATACCAAATGGAGGGTCGACTCCTTCTGGATGTTGTAATCGGCCAAGGTGCGACCGTC 52042
Query 39567 GTCCAATTGTTTCCCGCCAAAAATTAAACGCTGCTGATCCGAGGGTACGCCTTCTTTGTC 39626
|| | |||||||||| |||| || | | ||||| || | || | |||||| |||||
Sbjct 52041 CTCGAGTTGTTTCCCGGCAAAGATGAGCCTTTGCTGGTCTGGTGGGATGCCTTCCTTGTC 51982
Query 39627 GCATATTTTTTGTTTAATCGTCGCTACTG-TGTCTGCGCTTTCCACGTCCAAAGTAATTG 39685
|| || || | ||| | | || |||| | |||||| || |||||||| || |
Sbjct 51981 TTGGATCTTGGCCTTGA-CGTTGTCAATGGTGTCAGAGCTTTCGACTTCCAAAGTTATGG 51923
Query 39686 TTTTACCCGTTAAAGTTTTTACGAAGATCTGCATG 39720
| || || || | ||||| |||||||||||||||
Sbjct 51922 TCTTGCCGGTCAGGGTTTTGACGAAGATCTGCATG 51888
>seq5610
Length=141783
Score = 87.8 bits (96), Expect = 1e-12
Identities = 134/191 (70%), Gaps = 0/191 (0%)
Strand=Plus/Minus
Query 39529 TCTTTTTGTATATTATAATCGGCCAAAACGCGTTCATCGTCCAATTGTTTCCCGCCAAAA 39588
||||| || || |||||||| |||||| | |||| ||||||||||| ||| ||||
Sbjct 62623 TCTTTCTGAATGTTATAATCAGCCAAAGTCCTCCCATCTTCCAATTGTTTGCCGGCAAAG 62564
Query 39589 ATTAAACGCTGCTGATCCGAGGGTACGCCTTCTTTGTCGCATATTTTTTGTTTAATCGTC 39648
|| | | |||||||| | || | ||||| || || || ||| |||| |
Sbjct 62563 ATGAGCCTTTGCTGATCAGGTGGGATTCCTTCCTTATCCTGAATCTTTGCCTTAACATTG 62504
Query 39649 GCTACTGTGTCTGCGCTTTCCACGTCCAAAGTAATTGTTTTACCCGTTAAAGTTTTTACG 39708
| | || || | |||||| || ||||| || |||||||| || || ||||| || ||
Sbjct 62503 TCAATGGTATCGGAGCTTTCAACCTCCAAGGTGATTGTTTTGCCGGTCAAAGTCTTGACA 62444
Query 39709 AAGATCTGCAT 39719
|| ||||||||
Sbjct 62443 AAAATCTGCAT 62433
>seq2874
Length=261101
Score = 87.8 bits (96), Expect = 1e-12
Identities = 134/191 (70%), Gaps = 0/191 (0%)
Strand=Plus/Minus
Query 39529 TCTTTTTGTATATTATAATCGGCCAAAACGCGTTCATCGTCCAATTGTTTCCCGCCAAAA 39588
||||| || || |||||||| |||||| | |||| ||||||||||| ||| ||||
Sbjct 216268 TCTTTCTGAATGTTATAATCAGCCAAAGTCCTCCCATCTTCCAATTGTTTGCCGGCAAAG 216209
Query 39589 ATTAAACGCTGCTGATCCGAGGGTACGCCTTCTTTGTCGCATATTTTTTGTTTAATCGTC 39648
|| | | |||||||| | || | ||||| || || || ||| |||| |
Sbjct 216208 ATGAGCCTTTGCTGATCAGGTGGGATTCCTTCCTTATCCTGAATCTTTGCCTTAACATTG 216149
Query 39649 GCTACTGTGTCTGCGCTTTCCACGTCCAAAGTAATTGTTTTACCCGTTAAAGTTTTTACG 39708
| | || || | |||||| || ||||| || |||||||| || || ||||| || ||
Sbjct 216148 TCAATGGTATCGGAGCTTTCAACCTCCAAGGTGATTGTTTTGCCGGTCAAAGTCTTGACA 216089
Query 39709 AAGATCTGCAT 39719
|| ||||||||
Sbjct 216088 AAAATCTGCAT 216078
>seq481
Length=542854
Score = 87.8 bits (96), Expect = 1e-12
Identities = 159/232 (69%), Gaps = 8/232 (3%)
Strand=Plus/Minus
Query 39493 CCGCCTCGCAAACGCAGTACCAAATGCAAAGTGCTTTCTTTTTGTATATTATAATCGGCC 39552
|| || || | ||||| |||||||| | || ||| ||||| || ||||| || ||
Sbjct 258388 CCACCACGAAGACGCAACACCAAATGGAGGGTAGATTCCTTTTGAATGTTATAGTCTGCA 258329
Query 39553 AAAACGCGTTC----ATCGTCCAATTGTTTCCCGCCAAAAATTAAACGCTGCTGATCCGA 39608
| | |||| ||| || | ||||||||| |||||||||| | |||||| || |
Sbjct 258328 A----GGGTTCTGCCATCTTCAAGTTGTTTCCCAGCAAAAATTAACCTCTGCTGGTCTGG 258273
Query 39609 GGGTACGCCTTCTTTGTCGCATATTTTTTGTTTAATCGTCGCTACTGTGTCTGCGCTTTC 39668
|| | ||| || ||||| || || |||| | | | ||| || | || ||
Sbjct 258272 TGGGATGCCCTCCTTGTCCTGAATCTTGGACTTAACGTTATCAATTGTATCAGAACTCTC 258213
Query 39669 CACGTCCAAAGTAATTGTTTTACCCGTTAAAGTTTTTACGAAGATCTGCATG 39720
||| || ||||| || ||||| || || | |||||||| ||||||||||||
Sbjct 258212 CACCTCTAAAGTGATGGTTTTTCCAGTGAGCGTTTTTACAAAGATCTGCATG 258161
>seq6889
Length=136205
Score = 86.0 bits (94), Expect = 4e-12
Identities = 140/197 (71%), Gaps = 5/197 (3%)
Strand=Plus/Minus
Query 39525 GCTTTCTTTTTGTATATTATAATCGGCCAAAACGCGTTCATCGTCCAATTGTTTCCCGCC 39584
|||| ||| | | |||||||||||||||| || |||| || | ||||| ||| |
Sbjct 106162 GCTTCCTTCTCG-ATATTATAATCGGCCAGGGTACGGCCATCTTCGAGCTGTTTGCCGGC 106104
Query 39585 AAAAATTAAACGCTGCTGATCCGAGGGTACGCCTTCTTTGTCGCATATTTTTTG-TTTA- 39642
|| || | ||||||||| || | || | |||||| ||||| ||||| ||||
Sbjct 106103 GAAGATGAGACGCTGCTGGTCTGGTGGGATGCCTTCCTTGTCTTGAATTTTAGACTTTAC 106044
Query 39643 ATCGTCGCTACTGTGTCTGCGCTTTCCACGTCCAAAGTAATTGTTTTACCCGTTAAAGTT 39702
|| ||| | ||||| | ||| || || || | || || || || || |||||||||
Sbjct 106043 ATTATCGATG--GTGTCAGAGCTCTCGACTTCGAGGGTGATGGTCTTGCCGGTTAAAGTT 105986
Query 39703 TTTACGAAGATCTGCAT 39719
|| ||||||||||||||
Sbjct 105985 TTGACGAAGATCTGCAT 105969
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 347243647148183
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