Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Gossypium_20barbadense_20[genbank_20GCA_5F001856525.1_202016-11-03] 29,751 sequences; 2,566,742,836 total letters Query= NC_013797.1 Length=108592 Score E Sequences producing significant alignments: (Bits) Value seq8609 107 1e-18 seq2343 107 1e-18 seq9953 102 6e-17 seq13178 95.1 8e-15 seq25104 87.8 1e-12 seq10033 87.8 1e-12 seq5610 87.8 1e-12 seq2874 87.8 1e-12 seq481 87.8 1e-12 seq6889 86.0 4e-12 >seq8609 Length=114046 Score = 107 bits (118), Expect = 1e-18 Identities = 160/227 (70%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 39493 CCGCCTCGCAAACGCAGTACCAAATGCAAAGTGCTTTCTTTTTGTATATTATAATCGGCC 39552 || || || | ||| || || | || | |||| || ||||| ||||| ||||| ||| Sbjct 21387 CCACCACGAAGACGAAGAACAAGGTGAAGAGTGGACTCCTTTTGAATATTGTAATCAGCC 21328 Query 39553 AAAACGCGTTCATCGTCCAATTGTTTCCCGCCAAAAATTAAACGCTGCTGATCCGAGGGT 39612 ||| | | |||| |||| |||||||| ||||||| || | |||||||| | || Sbjct 21327 AAAGTCCTTCCATCTTCCAGCTGTTTCCCAGCAAAAATCAACCTTTGCTGATCTGGTGGA 21268 Query 39613 ACGCCTTCTTTGTCGCATATTTTTTGTTTAATCGTCGCTACTGTGTCTGCGCTTTCCACG 39672 | ||||||||||| || || ||| | | | | || || | ||| ||||| Sbjct 21267 ATTCCTTCTTTGTCCTGAATCTTCGCTTTCACGTTATCAATCGTATCCGAGCTCTCCACT 21208 Query 39673 TCCAAAGTAATTGTTTTACCCGTTAAAGTTTTTACGAAGATCTGCAT 39719 || |||||||| || ||||| || ||||| || |||||||||||||| Sbjct 21207 TCTAAAGTAATGGTCTTACCGGTCAAAGTCTTGACGAAGATCTGCAT 21161 >seq2343 Length=47720 Score = 107 bits (118), Expect = 1e-18 Identities = 160/227 (70%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 39493 CCGCCTCGCAAACGCAGTACCAAATGCAAAGTGCTTTCTTTTTGTATATTATAATCGGCC 39552 || || || | ||| || || | || | |||| || ||||| ||||| ||||| ||| Sbjct 23810 CCACCACGAAGACGAAGAACAAGGTGAAGAGTGGACTCCTTTTGAATATTGTAATCAGCC 23751 Query 39553 AAAACGCGTTCATCGTCCAATTGTTTCCCGCCAAAAATTAAACGCTGCTGATCCGAGGGT 39612 ||| | | | || |||| ||||||||| ||||||| || | |||||||| | || Sbjct 23750 AAAGTCCTTCCGTCTTCCAGTTGTTTCCCAGCAAAAATCAACCTTTGCTGATCTGGTGGA 23691 Query 39613 ACGCCTTCTTTGTCGCATATTTTTTGTTTAATCGTCGCTACTGTGTCTGCGCTTTCCACG 39672 | ||||||||||| || || ||| | | | | || || | ||| ||||| Sbjct 23690 ATTCCTTCTTTGTCCTGAATCTTCGCTTTCACGTTATCAATCGTATCCGAGCTCTCCACT 23631 Query 39673 TCCAAAGTAATTGTTTTACCCGTTAAAGTTTTTACGAAGATCTGCAT 39719 || |||||||| || ||||| || ||||| || |||||||||||||| Sbjct 23630 TCTAAAGTAATCGTCTTACCGGTCAAAGTCTTGACGAAGATCTGCAT 23584 >seq9953 Length=604776 Score = 102 bits (112), Expect = 6e-17 Identities = 161/229 (70%), Gaps = 4/229 (2%) Strand=Plus/Plus Query 39493 CCGCCTCGCAAACGCAGTACCAAATGCAAAGTGCTTTCTTTTTGTATATTATAATCGGCC 39552 || || || | ||||| || | || | |||| ||| || || ||||| ||||| ||| Sbjct 353500 CCACCCCGAAGACGCAAGACAAGGTGGAGAGTGGATTCCTTCTGAATATTGTAATCAGCC 353559 Query 39553 AAAACGCGTTCATCGTCCAATTGTTTCCCGCCAAAAATTAAACGCTGCTGATCCGAGGGT 39612 ||| | | |||| |||||||||||||| | ||||| || | |||||||| | || Sbjct 353560 AAAGTCCTTCCATCTTCCAATTGTTTCCCAGCGAAAATCAACCTTTGCTGATCTGGTGGA 353619 Query 39613 ACGCCTTCTTTGTCGCATATTTTTTGTTTA--ATCGTCGCTACTGTGTCTGCGCTTTCCA 39670 | ||||||||||| || || ||| || |||| | || || | || |||| Sbjct 353620 ATCCCTTCTTTGTCCTGAATCTTCGCCTTAACATTGTCG--ATCGTATCGGAACTCTCCA 353677 Query 39671 CGTCCAAAGTAATTGTTTTACCCGTTAAAGTTTTTACGAAGATCTGCAT 39719 | |||||||| || ||||| || || || || || ||||| |||||||| Sbjct 353678 CCTCCAAAGTTATGGTTTTCCCAGTCAACGTCTTGACGAAAATCTGCAT 353726 Score = 102 bits (112), Expect = 6e-17 Identities = 161/229 (70%), Gaps = 4/229 (2%) Strand=Plus/Plus Query 39493 CCGCCTCGCAAACGCAGTACCAAATGCAAAGTGCTTTCTTTTTGTATATTATAATCGGCC 39552 || || || | ||||| || | || | |||| ||| || || ||||| ||||| ||| Sbjct 354626 CCACCCCGAAGACGCAAGACAAGGTGGAGAGTGGATTCCTTCTGAATATTGTAATCAGCC 354685 Query 39553 AAAACGCGTTCATCGTCCAATTGTTTCCCGCCAAAAATTAAACGCTGCTGATCCGAGGGT 39612 ||| | | |||| |||||||||||||| | ||||| || | |||||||| | || Sbjct 354686 AAAGTCCTTCCATCTTCCAATTGTTTCCCAGCGAAAATCAACCTTTGCTGATCTGGTGGA 354745 Query 39613 ACGCCTTCTTTGTCGCATATTTTTTGTTTA--ATCGTCGCTACTGTGTCTGCGCTTTCCA 39670 | ||||||||||| || || ||| || |||| | || || | || |||| Sbjct 354746 ATTCCTTCTTTGTCCTGAATCTTCGCCTTAACATTGTCG--ATCGTATCGGAACTCTCCA 354803 Query 39671 CGTCCAAAGTAATTGTTTTACCCGTTAAAGTTTTTACGAAGATCTGCAT 39719 | |||||||| || ||||| || || || || || ||||| |||||||| Sbjct 354804 CCTCCAAAGTTATGGTTTTCCCAGTCAACGTCTTGACGAAAATCTGCAT 354852 Score = 96.9 bits (106), Expect = 2e-15 Identities = 152/215 (71%), Gaps = 2/215 (1%) Strand=Plus/Plus Query 39507 CAGTACCAAATGCAAAGTGCTTTCTTTTTGTATATTATAATCGGCCAAAACGCGTTCATC 39566 || ||||||||| | ||| || || || || || ||||||||||| ||| | || Sbjct 354868 CAATACCAAATGGAGGGTGGACTCCTTCTGGATGTTGTAATCGGCCAAGGTGCGACCGTC 354927 Query 39567 GTCCAATTGTTTCCCGCCAAAAATTAAACGCTGCTGATCCGAGGGTACGCCTTCTTTGTC 39626 || | |||||||||| |||| || | | ||||| || | || | |||||| ||||| Sbjct 354928 CTCGAGTTGTTTCCCGGCAAATATGAGCCTTTGCTGGTCTGGTGGGATGCCTTCCTTGTC 354987 Query 39627 GCATATTTTTTGTTTAATCGTCGCTACTG-TGTCTGCGCTTTCCACGTCCAAAGTAATTG 39685 || ||| || | ||| | | || |||| | |||||| || |||||||| || | Sbjct 354988 TTGGATCTTTGCCTTGA-CGTTGTCAATGGTGTCAGAGCTTTCGACTTCCAAAGTTATGG 355046 Query 39686 TTTTACCCGTTAAAGTTTTTACGAAGATCTGCATG 39720 | || || || | ||||| ||||||||||||||| Sbjct 355047 TCTTGCCGGTCAGGGTTTTGACGAAGATCTGCATG 355081 Score = 87.8 bits (96), Expect = 1e-12 Identities = 159/230 (69%), Gaps = 2/230 (1%) Strand=Plus/Plus Query 39492 GCCGCCTCGCAAACGCAGTACCAAATGCAAAGTGCTTTCTTTTTGTATATTATAATCGGC 39551 ||| || || | ||| || || | ||| | ||| || || || || || |||||||| Sbjct 355081 GCCACCACGTAGACGGAGGACGAGATGGAGGGTGGACTCCTTCTGGATGTTGTAATCGGC 355140 Query 39552 CAAAACGCGTTCATCGTCCAATTGTTTCCCGCCAAAAATTAAACGCTGCTGATCCGAGGG 39611 ||| ||| | || || | |||||||||| |||| || | | ||||| || | || Sbjct 355141 CAAGGTGCGACCGTCCTCGAGTTGTTTCCCGGCAAAGATGAGCCTTTGCTGGTCTGGTGG 355200 Query 39612 TACGCCTTCTTTGTCGCATATTTTTTGTTTAATCGTCGCTACTG-TGTCTGCGCTTTCCA 39670 | |||||| ||||| || || || | ||| | | || |||| | |||||| | Sbjct 355201 GATGCCTTCCTTGTCTTGGATCTTGGCCTTGA-CGTTGTCAATGGTGTCAGAGCTTTCGA 355259 Query 39671 CGTCCAAAGTAATTGTTTTACCCGTTAAAGTTTTTACGAAGATCTGCATG 39720 | |||||||| || || || || || | ||||| ||||||||||||||| Sbjct 355260 CTTCCAAAGTTATGGTCTTGCCGGTCAGGGTTTTGACGAAGATCTGCATG 355309 Score = 82.4 bits (90), Expect = 5e-11 Identities = 157/229 (69%), Gaps = 2/229 (1%) Strand=Plus/Plus Query 39492 GCCGCCTCGCAAACGCAGTACCAAATGCAAAGTGCTTTCTTTTTGTATATTATAATCGGC 39551 ||| || || | ||| || || | ||| | ||| || || || || || |||||||| Sbjct 355309 GCCACCACGTAGACGGAGGACGAGATGGAGGGTGGACTCCTTCTGGATGTTGTAATCGGC 355368 Query 39552 CAAAACGCGTTCATCGTCCAATTGTTTCCCGCCAAAAATTAAACGCTGCTGATCCGAGGG 39611 ||| ||| | || || | |||||||||| |||| || | | ||||| || | || Sbjct 355369 CAAGGTGCGACCGTCCTCGAGTTGTTTCCCGGCAAAGATGAGCCTTTGCTGGTCTGGTGG 355428 Query 39612 TACGCCTTCTTTGTCGCATATTTTTTGTTTAATCGTCG-CTACTGTGTCTGCGCTTTCCA 39670 | |||||| ||||| || || || | ||| | | | ||||| | |||||| | Sbjct 355429 GATGCCTTCCTTGTCTTGGATCTTGGCCTTGA-CGTTGTCAATGGTGTCAGAGCTTTCGA 355487 Query 39671 CGTCCAAAGTAATTGTTTTACCCGTTAAAGTTTTTACGAAGATCTGCAT 39719 | |||||||| || || || || || | || || |||||||||||||| Sbjct 355488 CTTCCAAAGTTATGGTCTTGCCGGTCAGGGTCTTAACGAAGATCTGCAT 355536 >seq13178 Length=14983 Score = 95.1 bits (104), Expect = 8e-15 Identities = 160/230 (70%), Gaps = 4/230 (2%) Strand=Plus/Minus Query 39492 GCCGCCTCGCAAACGCAGTACCAAATGCAAAGTGCTTTCTTTTTGTATATTATAATCGGC 39551 ||| || || | ||| || || | || | ||| ||| || || |||||||||||||| Sbjct 12202 GCCCCCGCGAAGACGGAGGACGAGGTGGAGGGTGGATTCCTTCTGGATATTATAATCGGC 12143 Query 39552 CAAAACGCGTTCATCGTCCAATTGTTTCCCGCCAAAAATTAAACGCTGCTGATCCGAGGG 39611 ||| || |||| || | ||||| ||| | || || | ||||||||| || | || Sbjct 12142 CAAGGTACGGCCATCTTCGAGCTGTTTGCCGGCGAAGATGAGACGCTGCTGGTCTGGTGG 12083 Query 39612 TACGCCTTCTTTGTCGCATATTTTTTGTTT--AATCGTCGCTACTGTGTCTGCGCTTTCC 39669 | |||||| ||||| ||||| || || |||| | ||||| | ||| || Sbjct 12082 GATGCCTTCCTTGTCTTGGATTTTAGACTTGACATTGTCG--ATGGTGTCGGAGCTCTCG 12025 Query 39670 ACGTCCAAAGTAATTGTTTTACCCGTTAAAGTTTTTACGAAGATCTGCAT 39719 || || | || || || ||||| ||||| ||||| |||||||||||||| Sbjct 12024 ACTTCGAGGGTGATGGTCTTACCGGTTAAGGTTTTGACGAAGATCTGCAT 11975 >seq25104 Length=148940 Score = 87.8 bits (96), Expect = 1e-12 Identities = 149/216 (69%), Gaps = 0/216 (0%) Strand=Plus/Minus Query 39505 CGCAGTACCAAATGCAAAGTGCTTTCTTTTTGTATATTATAATCGGCCAAAACGCGTTCA 39564 || || |||||||| | ||| || || || |||||||||||||| | | | | || Sbjct 36290 CGGAGAACCAAATGGAGAGTAGACTCCTTCTGGATATTATAATCGGCAAGAGTCCTTCCA 36231 Query 39565 TCGTCCAATTGTTTCCCGCCAAAAATTAAACGCTGCTGATCCGAGGGTACGCCTTCTTTG 39624 || || | |||||| || ||||||| || | || || || | || | ||||||||| Sbjct 36230 TCTTCAAGTTGTTTTCCAGCAAAAATCAATCTTTGTTGGTCTGGTGGGATTCCTTCTTTG 36171 Query 39625 TCGCATATTTTTTGTTTAATCGTCGCTACTGTGTCTGCGCTTTCCACGTCCAAAGTAATT 39684 || || || ||| | | | | || || | ||| ||||| ||||| |||||| Sbjct 36170 TCCTGAATCTTGGCTTTCACATTATCAATGGTATCCGAGCTCTCCACCTCCAAGGTAATT 36111 Query 39685 GTTTTACCCGTTAAAGTTTTTACGAAGATCTGCATG 39720 || || || || | |||||| || ||||| |||||| Sbjct 36110 GTCTTTCCAGTGAGAGTTTTGACAAAGATTTGCATG 36075 >seq10033 Length=52146 Score = 87.8 bits (96), Expect = 1e-12 Identities = 150/215 (70%), Gaps = 2/215 (1%) Strand=Plus/Minus Query 39507 CAGTACCAAATGCAAAGTGCTTTCTTTTTGTATATTATAATCGGCCAAAACGCGTTCATC 39566 || ||||||||| | || || || || || || ||||||||||| ||| | || Sbjct 52101 CAATACCAAATGGAGGGTCGACTCCTTCTGGATGTTGTAATCGGCCAAGGTGCGACCGTC 52042 Query 39567 GTCCAATTGTTTCCCGCCAAAAATTAAACGCTGCTGATCCGAGGGTACGCCTTCTTTGTC 39626 || | |||||||||| |||| || | | ||||| || | || | |||||| ||||| Sbjct 52041 CTCGAGTTGTTTCCCGGCAAAGATGAGCCTTTGCTGGTCTGGTGGGATGCCTTCCTTGTC 51982 Query 39627 GCATATTTTTTGTTTAATCGTCGCTACTG-TGTCTGCGCTTTCCACGTCCAAAGTAATTG 39685 || || || | ||| | | || |||| | |||||| || |||||||| || | Sbjct 51981 TTGGATCTTGGCCTTGA-CGTTGTCAATGGTGTCAGAGCTTTCGACTTCCAAAGTTATGG 51923 Query 39686 TTTTACCCGTTAAAGTTTTTACGAAGATCTGCATG 39720 | || || || | ||||| ||||||||||||||| Sbjct 51922 TCTTGCCGGTCAGGGTTTTGACGAAGATCTGCATG 51888 >seq5610 Length=141783 Score = 87.8 bits (96), Expect = 1e-12 Identities = 134/191 (70%), Gaps = 0/191 (0%) Strand=Plus/Minus Query 39529 TCTTTTTGTATATTATAATCGGCCAAAACGCGTTCATCGTCCAATTGTTTCCCGCCAAAA 39588 ||||| || || |||||||| |||||| | |||| ||||||||||| ||| |||| Sbjct 62623 TCTTTCTGAATGTTATAATCAGCCAAAGTCCTCCCATCTTCCAATTGTTTGCCGGCAAAG 62564 Query 39589 ATTAAACGCTGCTGATCCGAGGGTACGCCTTCTTTGTCGCATATTTTTTGTTTAATCGTC 39648 || | | |||||||| | || | ||||| || || || ||| |||| | Sbjct 62563 ATGAGCCTTTGCTGATCAGGTGGGATTCCTTCCTTATCCTGAATCTTTGCCTTAACATTG 62504 Query 39649 GCTACTGTGTCTGCGCTTTCCACGTCCAAAGTAATTGTTTTACCCGTTAAAGTTTTTACG 39708 | | || || | |||||| || ||||| || |||||||| || || ||||| || || Sbjct 62503 TCAATGGTATCGGAGCTTTCAACCTCCAAGGTGATTGTTTTGCCGGTCAAAGTCTTGACA 62444 Query 39709 AAGATCTGCAT 39719 || |||||||| Sbjct 62443 AAAATCTGCAT 62433 >seq2874 Length=261101 Score = 87.8 bits (96), Expect = 1e-12 Identities = 134/191 (70%), Gaps = 0/191 (0%) Strand=Plus/Minus Query 39529 TCTTTTTGTATATTATAATCGGCCAAAACGCGTTCATCGTCCAATTGTTTCCCGCCAAAA 39588 ||||| || || |||||||| |||||| | |||| ||||||||||| ||| |||| Sbjct 216268 TCTTTCTGAATGTTATAATCAGCCAAAGTCCTCCCATCTTCCAATTGTTTGCCGGCAAAG 216209 Query 39589 ATTAAACGCTGCTGATCCGAGGGTACGCCTTCTTTGTCGCATATTTTTTGTTTAATCGTC 39648 || | | |||||||| | || | ||||| || || || ||| |||| | Sbjct 216208 ATGAGCCTTTGCTGATCAGGTGGGATTCCTTCCTTATCCTGAATCTTTGCCTTAACATTG 216149 Query 39649 GCTACTGTGTCTGCGCTTTCCACGTCCAAAGTAATTGTTTTACCCGTTAAAGTTTTTACG 39708 | | || || | |||||| || ||||| || |||||||| || || ||||| || || Sbjct 216148 TCAATGGTATCGGAGCTTTCAACCTCCAAGGTGATTGTTTTGCCGGTCAAAGTCTTGACA 216089 Query 39709 AAGATCTGCAT 39719 || |||||||| Sbjct 216088 AAAATCTGCAT 216078 >seq481 Length=542854 Score = 87.8 bits (96), Expect = 1e-12 Identities = 159/232 (69%), Gaps = 8/232 (3%) Strand=Plus/Minus Query 39493 CCGCCTCGCAAACGCAGTACCAAATGCAAAGTGCTTTCTTTTTGTATATTATAATCGGCC 39552 || || || | ||||| |||||||| | || ||| ||||| || ||||| || || Sbjct 258388 CCACCACGAAGACGCAACACCAAATGGAGGGTAGATTCCTTTTGAATGTTATAGTCTGCA 258329 Query 39553 AAAACGCGTTC----ATCGTCCAATTGTTTCCCGCCAAAAATTAAACGCTGCTGATCCGA 39608 | | |||| ||| || | ||||||||| |||||||||| | |||||| || | Sbjct 258328 A----GGGTTCTGCCATCTTCAAGTTGTTTCCCAGCAAAAATTAACCTCTGCTGGTCTGG 258273 Query 39609 GGGTACGCCTTCTTTGTCGCATATTTTTTGTTTAATCGTCGCTACTGTGTCTGCGCTTTC 39668 || | ||| || ||||| || || |||| | | | ||| || | || || Sbjct 258272 TGGGATGCCCTCCTTGTCCTGAATCTTGGACTTAACGTTATCAATTGTATCAGAACTCTC 258213 Query 39669 CACGTCCAAAGTAATTGTTTTACCCGTTAAAGTTTTTACGAAGATCTGCATG 39720 ||| || ||||| || ||||| || || | |||||||| |||||||||||| Sbjct 258212 CACCTCTAAAGTGATGGTTTTTCCAGTGAGCGTTTTTACAAAGATCTGCATG 258161 >seq6889 Length=136205 Score = 86.0 bits (94), Expect = 4e-12 Identities = 140/197 (71%), Gaps = 5/197 (3%) Strand=Plus/Minus Query 39525 GCTTTCTTTTTGTATATTATAATCGGCCAAAACGCGTTCATCGTCCAATTGTTTCCCGCC 39584 |||| ||| | | |||||||||||||||| || |||| || | ||||| ||| | Sbjct 106162 GCTTCCTTCTCG-ATATTATAATCGGCCAGGGTACGGCCATCTTCGAGCTGTTTGCCGGC 106104 Query 39585 AAAAATTAAACGCTGCTGATCCGAGGGTACGCCTTCTTTGTCGCATATTTTTTG-TTTA- 39642 || || | ||||||||| || | || | |||||| ||||| ||||| |||| Sbjct 106103 GAAGATGAGACGCTGCTGGTCTGGTGGGATGCCTTCCTTGTCTTGAATTTTAGACTTTAC 106044 Query 39643 ATCGTCGCTACTGTGTCTGCGCTTTCCACGTCCAAAGTAATTGTTTTACCCGTTAAAGTT 39702 || ||| | ||||| | ||| || || || | || || || || || ||||||||| Sbjct 106043 ATTATCGATG--GTGTCAGAGCTCTCGACTTCGAGGGTGATGGTCTTGCCGGTTAAAGTT 105986 Query 39703 TTTACGAAGATCTGCAT 39719 || |||||||||||||| Sbjct 105985 TTGACGAAGATCTGCAT 105969 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 347243647148183