Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Gossypium_20barbadense_20[genbank_20GCA_5F001856525.1_202016-11-03]
29,751 sequences; 2,566,742,836 total letters
Query= NC_014766.1
Length=194022
Score E
Sequences producing significant alignments: (Bits) Value
seq7139 141 1e-28
seq27182 136 5e-27
seq21511 96.9 4e-15
seq216 86.0 8e-12
>seq7139
Length=440615
Score = 141 bits (156), Expect = 1e-28
Identities = 256/368 (70%), Gaps = 10/368 (3%)
Strand=Plus/Plus
Query 15887 ATCAAAGCGACCTGGGCGAAGGAGCGCGTCATCAAGGATATCAACGCGATTCGTTGCGGC 15946
|||||| || ||||| | | | ||| |||||| || ||| | | || ||||| ||
Sbjct 160780 ATCAAACCGTCCTGGCCTCAACAAAGCGGAATCAAGAATGTCAGCTCTGTTAGTTGCTGC 160839
Query 15947 GATGACAACAATACCTGTTTCGTTA---TCAAAACCATCCATCTCTGTCAAAAGCTGGTT 16003
|| || | ||||| || |||| || ||||||||||| || ||||||||||||||
Sbjct 160840 AATTACGATGATACCGGT---GTTACCCTCGAAACCATCCATTTCGGTCAAAAGCTGGTT 160896
Query 16004 AATAGTTTGTTCCCGTTCATCATTCGCTGGCATACCACCAGCACTGCGTTGCTTTCCCAC 16063
|| |||||| || | ||||||||| || | ||||| | | ||| ||| ||
Sbjct 160897 AAGAGTTTGCTCTCTCTCATCATTCCCTCCACCAATACCAGTTCCTCTTTGTCGTCCAAC 160956
Query 16064 GGCATCAATCTCATCAATGAAGACGATGCATGGTTGATT-TTCGCGAGCGACTTCAAAGA 16122
||||||||| ||||| | |||||||| || || ||| | | | | ||| ||| |
Sbjct 160957 GGCATCAATTTCATCCACAAAGACGATACAGGGGGCATTCTCCTTGGCCTTCTTGAAA-A 161015
Query 16123 GATCCCGTACACGCTTGGCGCCCACACCAACAAACATCTCCACAAAGTTTGCGGCGGAAC 16182
|||| || || || || || |||||||||||||| || ||||| | | |||||
Sbjct 161016 GATCACGAACTCGAGAAGCACCAACACCAACAAACATTTCAACAAACTCAGAACCGGAA- 161074
Query 16183 ATTG-GATGAAGGGGACATTAGATTCACCCGCAATGGCTCGGGCGAGAAGAGTCTTACCC 16241
|| | || ||| || ||| || |||||| ||||| || || ||||||||||| ||
Sbjct 161075 ATGGAGAAGAATGGCACACCAGCTTCACCGGCAATTGCCTTAGCAAGAAGAGTCTTTCCG 161134
Query 16242 GTACCTGG 16249
|| || ||
Sbjct 161135 GTTCCAGG 161142
>seq27182
Length=171535
Score = 136 bits (150), Expect = 5e-27
Identities = 255/368 (69%), Gaps = 10/368 (3%)
Strand=Plus/Plus
Query 15887 ATCAAAGCGACCTGGGCGAAGGAGCGCGTCATCAAGGATATCAACGCGATTCGTTGCGGC 15946
|||||| || ||||| | | | ||| |||||| || ||| | | || ||||| ||
Sbjct 138778 ATCAAACCGTCCTGGCCTCAACAAAGCGGAATCAAGAATGTCAGCTCTGTTAGTTGCTGC 138837
Query 15947 GATGACAACAATACCTGTTTCGTTA---TCAAAACCATCCATCTCTGTCAAAAGCTGGTT 16003
|| || | ||||| || |||| || ||||||||||| || ||||||||||||||
Sbjct 138838 AATTACGATGATACCGGT---GTTACCCTCGAAACCATCCATTTCGGTCAAAAGCTGGTT 138894
Query 16004 AATAGTTTGTTCCCGTTCATCATTCGCTGGCATACCACCAGCACTGCGTTGCTTTCCCAC 16063
|| |||||| || | ||||||||| || | ||||| | | ||| ||| ||
Sbjct 138895 AAGAGTTTGCTCTCTCTCATCATTCCCTCCACCAATACCAGTTCCTCTTTGTCGTCCAAC 138954
Query 16064 GGCATCAATCTCATCAATGAAGACGATGCATGGTTGATT-TTCGCGAGCGACTTCAAAGA 16122
||||||||| ||||| | |||||||| || || ||| | | | | ||| ||| |
Sbjct 138955 GGCATCAATTTCATCCACAAAGACGATACAGGGGGCATTCTCCTTGGCCTTCTTGAAA-A 139013
Query 16123 GATCCCGTACACGCTTGGCGCCCACACCAACAAACATCTCCACAAAGTTTGCGGCGGAAC 16182
|||| || || || || || |||||||||||||| || ||||| | | | |||
Sbjct 139014 GATCACGAACTCGAGAAGCACCAACACCAACAAACATTTCAACAAACTCGGAACCTGAA- 139072
Query 16183 ATTG-GATGAAGGGGACATTAGATTCACCCGCAATGGCTCGGGCGAGAAGAGTCTTACCC 16241
|| | || ||| || ||| || |||||| ||||| || || ||||||||||| ||
Sbjct 139073 ATGGAGAAGAACGGCACACCAGCTTCACCAGCAATTGCCTTAGCAAGAAGAGTCTTTCCG 139132
Query 16242 GTACCTGG 16249
|| || ||
Sbjct 139133 GTTCCAGG 139140
>seq21511
Length=123759
Score = 96.9 bits (106), Expect = 4e-15
Identities = 308/469 (66%), Gaps = 14/469 (3%)
Strand=Plus/Minus
Query 15917 ATCAAGGATATCAACGCGATTCGTTGCGGCGATGACAACAATACCTGTTTCGTTATCAAA 15976
||| || || ||| | ||| || || || ||||||| || || || | | |||
Sbjct 121728 ATCCAGAATTTCAGGCCTATTAGTAGCAGCAATGACAATAACTCCAGTATTACCAGTAAA 121669
Query 15977 ACCATCCATCTCTGTCAAAAGCTGGTTAATAGTTTGTTCCCGTTCATCATTCGCTGGCAT 16036
||||||||| || ||||| ||||| || | |||||| |||| |||||||||| ||
Sbjct 121668 ACCATCCATTTCAGTCAACAGCTGATTCAAAGTTTGCTCCCTTTCATCATTCCCT---CC 121612
Query 16037 ACCA---CCAGCACTGCGTTGCTTTCCCACGGCATCAATCTCATCAATGAAGACGATGCA 16093
|||| |||| | | || |||| || |||||||||||||| ||||| || | ||
Sbjct 121611 ACCAATCCCAGTTCCTCTCTGTCTTCCAACAGCATCAATCTCATCGATGAACACCAAACA 121552
Query 16094 TGGTTGATTTTCGCGAGCGACTTCAAAGAGATCCCGTACACGCTTG--GCGCCCACACCA 16151
||| ||| | || | ||| || |||| || || || | || || || |||
Sbjct 121551 TGGGGAATTAGCCTTTGCCTTGTTAAACAGGTCCC-TA-ACTCTGGAAGCTCCAACGCCA 121494
Query 16152 ACAAACATCTCCACAAAGTTTGCGGCGGAACATTGGATGAAGGGGACATTAGATTCACCC 16211
||||||||||| | || | || | ||| | ||| || || | ||| ||
Sbjct 121493 ACAAACATCTCGATGAACTCTGAACCAGAAAGGGAAAAGAAAGGAACCCCTGCTTCCCCT 121434
Query 16212 GCAATGGCTCGGGCGAGAAGAGTCTTACCCGTACCTGGCTTACCCGCGAGGAGGGCACCT 16271
|||||||| ||| || | |||||||| || ||||| || || || | |||
Sbjct 121433 GCAATGGCCTTGGCCAGCAATGTCTTACCAGTCCCTGGAGGTCCAATTAGAAGCACTCCT 121374
Query 16272 CGTGGAATCTTGGCGCCACTTCC--AAAGTATCTCTCAGGTTGCTTAAGAAAATCCACAA 16329
||||| |||| ||| || | || | | ||| |||| ||||| || ||||| |
Sbjct 121373 TTGGGAATTGTGGCACCAATTGCTGCAAATTTTTCTGGGGTT-TTTAAG-AACTCCACTA 121316
Query 16330 TCTCTTCCAATTCATCTTTGGCGGCGTCAATCCCCTCAACATCGGTAAA 16378
||||| || || | ||||| | ||||| || | |||||| ||||
Sbjct 121315 CCTCTTGAAAATCTTGCTTGGCTTCATCAATACCAGCTACATCGTTAAA 121267
>seq216
Length=206475
Score = 86.0 bits (94), Expect = 8e-12
Identities = 190/283 (67%), Gaps = 14/283 (5%)
Strand=Plus/Plus
Query 15974 AAAACCATCCATCTCTGTCAAAAGCTGGTTAATAGTTTGTTCCCGTTCATCATTCGCTGG 16033
||| ||||||||||| |||| | |||||| || || || || | ||||||||| ||
Sbjct 161969 AAATCCATCCATCTCAGTCAGCAACTGGTTGATTGTCTGCTCTCTTTCATCATTTCCT-- 162026
Query 16034 CATACCA--CCAGCACTGCGTTGCTTTCCCACGGCATCAATCTCATCAATGAAGACGATG 16091
| | | | ||||| | | || | || || ||||| |||||||| ||||| || |||
Sbjct 162027 CCTCCAAGCCCAGCTCCTCTCTGTCTCCCAACAGCATCGATCTCATCTATGAATACAATG 162086
Query 16092 CATGG-----TTGATTTTCGCGAGCGACTTCAAAGAGATCCCGTACACGCTTGGCGCCCA 16146
|| || | |||||| || ||| || | ||||| ||| | ||||| |
Sbjct 162087 CAAGGCGCTTTGGATTTT-----GCCTTTTCGAACAAATCCCTTACCCTGGACGCGCCTA 162141
Query 16147 CACCAACAAACATCTCCACAAAGTTTGCGGCGGAACATTGGATGAAGGGGACATTAGATT 16206
| ||||| |||| ||||||||| | | || | ||| || ||||| || | ||
Sbjct 162142 CTCCAACGAACAACTCCACAAACTCCGAAGCTGCGCATGAGAAAAAGGGCACCCCGGCTT 162201
Query 16207 CACCCGCAATGGCTCGGGCGAGAAGAGTCTTACCCGTACCTGG 16249
| || || | ||||| || | |||||||| || ||||| ||
Sbjct 162202 CCCCTGCCACGGCTCTCGCCAATAGAGTCTTGCCGGTACCAGG 162244
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 620511553660720
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |