Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Gossypium_20barbadense_20[genbank_20GCA_5F001856525.1_202016-11-03] 29,751 sequences; 2,566,742,836 total letters Query= NC_014766.1 Length=194022 Score E Sequences producing significant alignments: (Bits) Value seq7139 141 1e-28 seq27182 136 5e-27 seq21511 96.9 4e-15 seq216 86.0 8e-12 >seq7139 Length=440615 Score = 141 bits (156), Expect = 1e-28 Identities = 256/368 (70%), Gaps = 10/368 (3%) Strand=Plus/Plus Query 15887 ATCAAAGCGACCTGGGCGAAGGAGCGCGTCATCAAGGATATCAACGCGATTCGTTGCGGC 15946 |||||| || ||||| | | | ||| |||||| || ||| | | || ||||| || Sbjct 160780 ATCAAACCGTCCTGGCCTCAACAAAGCGGAATCAAGAATGTCAGCTCTGTTAGTTGCTGC 160839 Query 15947 GATGACAACAATACCTGTTTCGTTA---TCAAAACCATCCATCTCTGTCAAAAGCTGGTT 16003 || || | ||||| || |||| || ||||||||||| || |||||||||||||| Sbjct 160840 AATTACGATGATACCGGT---GTTACCCTCGAAACCATCCATTTCGGTCAAAAGCTGGTT 160896 Query 16004 AATAGTTTGTTCCCGTTCATCATTCGCTGGCATACCACCAGCACTGCGTTGCTTTCCCAC 16063 || |||||| || | ||||||||| || | ||||| | | ||| ||| || Sbjct 160897 AAGAGTTTGCTCTCTCTCATCATTCCCTCCACCAATACCAGTTCCTCTTTGTCGTCCAAC 160956 Query 16064 GGCATCAATCTCATCAATGAAGACGATGCATGGTTGATT-TTCGCGAGCGACTTCAAAGA 16122 ||||||||| ||||| | |||||||| || || ||| | | | | ||| ||| | Sbjct 160957 GGCATCAATTTCATCCACAAAGACGATACAGGGGGCATTCTCCTTGGCCTTCTTGAAA-A 161015 Query 16123 GATCCCGTACACGCTTGGCGCCCACACCAACAAACATCTCCACAAAGTTTGCGGCGGAAC 16182 |||| || || || || || |||||||||||||| || ||||| | | ||||| Sbjct 161016 GATCACGAACTCGAGAAGCACCAACACCAACAAACATTTCAACAAACTCAGAACCGGAA- 161074 Query 16183 ATTG-GATGAAGGGGACATTAGATTCACCCGCAATGGCTCGGGCGAGAAGAGTCTTACCC 16241 || | || ||| || ||| || |||||| ||||| || || ||||||||||| || Sbjct 161075 ATGGAGAAGAATGGCACACCAGCTTCACCGGCAATTGCCTTAGCAAGAAGAGTCTTTCCG 161134 Query 16242 GTACCTGG 16249 || || || Sbjct 161135 GTTCCAGG 161142 >seq27182 Length=171535 Score = 136 bits (150), Expect = 5e-27 Identities = 255/368 (69%), Gaps = 10/368 (3%) Strand=Plus/Plus Query 15887 ATCAAAGCGACCTGGGCGAAGGAGCGCGTCATCAAGGATATCAACGCGATTCGTTGCGGC 15946 |||||| || ||||| | | | ||| |||||| || ||| | | || ||||| || Sbjct 138778 ATCAAACCGTCCTGGCCTCAACAAAGCGGAATCAAGAATGTCAGCTCTGTTAGTTGCTGC 138837 Query 15947 GATGACAACAATACCTGTTTCGTTA---TCAAAACCATCCATCTCTGTCAAAAGCTGGTT 16003 || || | ||||| || |||| || ||||||||||| || |||||||||||||| Sbjct 138838 AATTACGATGATACCGGT---GTTACCCTCGAAACCATCCATTTCGGTCAAAAGCTGGTT 138894 Query 16004 AATAGTTTGTTCCCGTTCATCATTCGCTGGCATACCACCAGCACTGCGTTGCTTTCCCAC 16063 || |||||| || | ||||||||| || | ||||| | | ||| ||| || Sbjct 138895 AAGAGTTTGCTCTCTCTCATCATTCCCTCCACCAATACCAGTTCCTCTTTGTCGTCCAAC 138954 Query 16064 GGCATCAATCTCATCAATGAAGACGATGCATGGTTGATT-TTCGCGAGCGACTTCAAAGA 16122 ||||||||| ||||| | |||||||| || || ||| | | | | ||| ||| | Sbjct 138955 GGCATCAATTTCATCCACAAAGACGATACAGGGGGCATTCTCCTTGGCCTTCTTGAAA-A 139013 Query 16123 GATCCCGTACACGCTTGGCGCCCACACCAACAAACATCTCCACAAAGTTTGCGGCGGAAC 16182 |||| || || || || || |||||||||||||| || ||||| | | | ||| Sbjct 139014 GATCACGAACTCGAGAAGCACCAACACCAACAAACATTTCAACAAACTCGGAACCTGAA- 139072 Query 16183 ATTG-GATGAAGGGGACATTAGATTCACCCGCAATGGCTCGGGCGAGAAGAGTCTTACCC 16241 || | || ||| || ||| || |||||| ||||| || || ||||||||||| || Sbjct 139073 ATGGAGAAGAACGGCACACCAGCTTCACCAGCAATTGCCTTAGCAAGAAGAGTCTTTCCG 139132 Query 16242 GTACCTGG 16249 || || || Sbjct 139133 GTTCCAGG 139140 >seq21511 Length=123759 Score = 96.9 bits (106), Expect = 4e-15 Identities = 308/469 (66%), Gaps = 14/469 (3%) Strand=Plus/Minus Query 15917 ATCAAGGATATCAACGCGATTCGTTGCGGCGATGACAACAATACCTGTTTCGTTATCAAA 15976 ||| || || ||| | ||| || || || ||||||| || || || | | ||| Sbjct 121728 ATCCAGAATTTCAGGCCTATTAGTAGCAGCAATGACAATAACTCCAGTATTACCAGTAAA 121669 Query 15977 ACCATCCATCTCTGTCAAAAGCTGGTTAATAGTTTGTTCCCGTTCATCATTCGCTGGCAT 16036 ||||||||| || ||||| ||||| || | |||||| |||| |||||||||| || Sbjct 121668 ACCATCCATTTCAGTCAACAGCTGATTCAAAGTTTGCTCCCTTTCATCATTCCCT---CC 121612 Query 16037 ACCA---CCAGCACTGCGTTGCTTTCCCACGGCATCAATCTCATCAATGAAGACGATGCA 16093 |||| |||| | | || |||| || |||||||||||||| ||||| || | || Sbjct 121611 ACCAATCCCAGTTCCTCTCTGTCTTCCAACAGCATCAATCTCATCGATGAACACCAAACA 121552 Query 16094 TGGTTGATTTTCGCGAGCGACTTCAAAGAGATCCCGTACACGCTTG--GCGCCCACACCA 16151 ||| ||| | || | ||| || |||| || || || | || || || ||| Sbjct 121551 TGGGGAATTAGCCTTTGCCTTGTTAAACAGGTCCC-TA-ACTCTGGAAGCTCCAACGCCA 121494 Query 16152 ACAAACATCTCCACAAAGTTTGCGGCGGAACATTGGATGAAGGGGACATTAGATTCACCC 16211 ||||||||||| | || | || | ||| | ||| || || | ||| || Sbjct 121493 ACAAACATCTCGATGAACTCTGAACCAGAAAGGGAAAAGAAAGGAACCCCTGCTTCCCCT 121434 Query 16212 GCAATGGCTCGGGCGAGAAGAGTCTTACCCGTACCTGGCTTACCCGCGAGGAGGGCACCT 16271 |||||||| ||| || | |||||||| || ||||| || || || | ||| Sbjct 121433 GCAATGGCCTTGGCCAGCAATGTCTTACCAGTCCCTGGAGGTCCAATTAGAAGCACTCCT 121374 Query 16272 CGTGGAATCTTGGCGCCACTTCC--AAAGTATCTCTCAGGTTGCTTAAGAAAATCCACAA 16329 ||||| |||| ||| || | || | | ||| |||| ||||| || ||||| | Sbjct 121373 TTGGGAATTGTGGCACCAATTGCTGCAAATTTTTCTGGGGTT-TTTAAG-AACTCCACTA 121316 Query 16330 TCTCTTCCAATTCATCTTTGGCGGCGTCAATCCCCTCAACATCGGTAAA 16378 ||||| || || | ||||| | ||||| || | |||||| |||| Sbjct 121315 CCTCTTGAAAATCTTGCTTGGCTTCATCAATACCAGCTACATCGTTAAA 121267 >seq216 Length=206475 Score = 86.0 bits (94), Expect = 8e-12 Identities = 190/283 (67%), Gaps = 14/283 (5%) Strand=Plus/Plus Query 15974 AAAACCATCCATCTCTGTCAAAAGCTGGTTAATAGTTTGTTCCCGTTCATCATTCGCTGG 16033 ||| ||||||||||| |||| | |||||| || || || || | ||||||||| || Sbjct 161969 AAATCCATCCATCTCAGTCAGCAACTGGTTGATTGTCTGCTCTCTTTCATCATTTCCT-- 162026 Query 16034 CATACCA--CCAGCACTGCGTTGCTTTCCCACGGCATCAATCTCATCAATGAAGACGATG 16091 | | | | ||||| | | || | || || ||||| |||||||| ||||| || ||| Sbjct 162027 CCTCCAAGCCCAGCTCCTCTCTGTCTCCCAACAGCATCGATCTCATCTATGAATACAATG 162086 Query 16092 CATGG-----TTGATTTTCGCGAGCGACTTCAAAGAGATCCCGTACACGCTTGGCGCCCA 16146 || || | |||||| || ||| || | ||||| ||| | ||||| | Sbjct 162087 CAAGGCGCTTTGGATTTT-----GCCTTTTCGAACAAATCCCTTACCCTGGACGCGCCTA 162141 Query 16147 CACCAACAAACATCTCCACAAAGTTTGCGGCGGAACATTGGATGAAGGGGACATTAGATT 16206 | ||||| |||| ||||||||| | | || | ||| || ||||| || | || Sbjct 162142 CTCCAACGAACAACTCCACAAACTCCGAAGCTGCGCATGAGAAAAAGGGCACCCCGGCTT 162201 Query 16207 CACCCGCAATGGCTCGGGCGAGAAGAGTCTTACCCGTACCTGG 16249 | || || | ||||| || | |||||||| || ||||| || Sbjct 162202 CCCCTGCCACGGCTCTCGCCAATAGAGTCTTGCCGGTACCAGG 162244 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 620511553660720