Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Gossypium_20barbadense_20[genbank_20GCA_5F001856525.1_202016-11-03]
29,751 sequences; 2,566,742,836 total letters
Query= NC_014767.1
Length=184095
Score E
Sequences producing significant alignments: (Bits) Value
seq18041 91.5 2e-13
seq24372 84.2 3e-11
seq22013 84.2 3e-11
seq24754 82.4 9e-11
>seq18041
Length=224955
Score = 91.5 bits (100), Expect = 2e-13
Identities = 78/94 (83%), Gaps = 3/94 (3%)
Strand=Plus/Plus
Query 138231 AGAAAGTGATAT--AGTTGGGGCTCTCATAGTGTAGTGGTCAACACTGTGGACTTTGAAT 138288
||||| |||||| |||||||| || ||| |||||||||| | |||| ||||||||||||
Sbjct 47811 AGAAATTGATATCAAGTTGGGGTTC-CATGGTGTAGTGGTTAGCACTCTGGACTTTGAAT 47869
Query 138289 CCACCACCCTAGGTTCGACTCCTAGTGGGAGCTT 138322
||| | ||| ||||||||||| |||||| |||
Sbjct 47870 CCAGCGACCTGGGTTCGACTCCCGGTGGGACCTT 47903
>seq24372
Length=417169
Score = 84.2 bits (92), Expect = 3e-11
Identities = 52/56 (93%), Gaps = 0/56 (0%)
Strand=Plus/Minus
Query 136717 TAGCTCAGTTGGTTAGAGCGTGGTGCTTATAACGCCAAGGTCACGGGTTCGAGCCC 136772
||||||||||||||||||||||||||| |||||||||||||| | |||||||| ||
Sbjct 36977 TAGCTCAGTTGGTTAGAGCGTGGTGCTAATAACGCCAAGGTCGCAGGTTCGAGACC 36922
>seq22013
Length=302264
Score = 84.2 bits (92), Expect = 3e-11
Identities = 69/84 (82%), Gaps = 0/84 (0%)
Strand=Plus/Minus
Query 136717 TAGCTCAGTTGGTTAGAGCGTGGTGCTTATAACGCCAAGGTCACGGGTTCGAGCCCCGTT 136776
||||||||||||||||||||| | ||||| | | |||||| |||||||||||||||
Sbjct 78400 TAGCTCAGTTGGTTAGAGCGTTGGTCTTATGAGCCGAAGGTCGCGGGTTCGAGCCCCGCC 78341
Query 136777 GGGAACAGCTTTTAGATATATTTT 136800
|||| || |||| ||||| ||||
Sbjct 78340 GGGACCATTTTTTTGATATTTTTT 78317
>seq24754
Length=417519
Score = 82.4 bits (90), Expect = 9e-11
Identities = 74/92 (80%), Gaps = 1/92 (1%)
Strand=Plus/Minus
Query 138245 TTGGGGCTCTCATAGTGTAGTGGTCAACACTGTGGACTTTGAATCCACCACCCTAGGTTC 138304
|||||| || ||| |||||||||| | |||| ||||||||||||||| | ||| |||||
Sbjct 403718 TTGGGGTTC-CATGGTGTAGTGGTTAGCACTCTGGACTTTGAATCCAGCGACCTGGGTTC 403660
Query 138305 GACTCCTAGTGGGAGCTTAACCTCTCTTAGCT 138336
|||||| |||||| ||| |||| ||| ||
Sbjct 403659 GACTCCCGGTGGGACCTTGCTCTCTTTTATCT 403628
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 588756967187800
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |