Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Gossypium_20barbadense_20[genbank_20GCA_5F001856525.1_202016-11-03] 29,751 sequences; 2,566,742,836 total letters Query= NC_014767.1 Length=184095 Score E Sequences producing significant alignments: (Bits) Value seq18041 91.5 2e-13 seq24372 84.2 3e-11 seq22013 84.2 3e-11 seq24754 82.4 9e-11 >seq18041 Length=224955 Score = 91.5 bits (100), Expect = 2e-13 Identities = 78/94 (83%), Gaps = 3/94 (3%) Strand=Plus/Plus Query 138231 AGAAAGTGATAT--AGTTGGGGCTCTCATAGTGTAGTGGTCAACACTGTGGACTTTGAAT 138288 ||||| |||||| |||||||| || ||| |||||||||| | |||| |||||||||||| Sbjct 47811 AGAAATTGATATCAAGTTGGGGTTC-CATGGTGTAGTGGTTAGCACTCTGGACTTTGAAT 47869 Query 138289 CCACCACCCTAGGTTCGACTCCTAGTGGGAGCTT 138322 ||| | ||| ||||||||||| |||||| ||| Sbjct 47870 CCAGCGACCTGGGTTCGACTCCCGGTGGGACCTT 47903 >seq24372 Length=417169 Score = 84.2 bits (92), Expect = 3e-11 Identities = 52/56 (93%), Gaps = 0/56 (0%) Strand=Plus/Minus Query 136717 TAGCTCAGTTGGTTAGAGCGTGGTGCTTATAACGCCAAGGTCACGGGTTCGAGCCC 136772 ||||||||||||||||||||||||||| |||||||||||||| | |||||||| || Sbjct 36977 TAGCTCAGTTGGTTAGAGCGTGGTGCTAATAACGCCAAGGTCGCAGGTTCGAGACC 36922 >seq22013 Length=302264 Score = 84.2 bits (92), Expect = 3e-11 Identities = 69/84 (82%), Gaps = 0/84 (0%) Strand=Plus/Minus Query 136717 TAGCTCAGTTGGTTAGAGCGTGGTGCTTATAACGCCAAGGTCACGGGTTCGAGCCCCGTT 136776 ||||||||||||||||||||| | ||||| | | |||||| ||||||||||||||| Sbjct 78400 TAGCTCAGTTGGTTAGAGCGTTGGTCTTATGAGCCGAAGGTCGCGGGTTCGAGCCCCGCC 78341 Query 136777 GGGAACAGCTTTTAGATATATTTT 136800 |||| || |||| ||||| |||| Sbjct 78340 GGGACCATTTTTTTGATATTTTTT 78317 >seq24754 Length=417519 Score = 82.4 bits (90), Expect = 9e-11 Identities = 74/92 (80%), Gaps = 1/92 (1%) Strand=Plus/Minus Query 138245 TTGGGGCTCTCATAGTGTAGTGGTCAACACTGTGGACTTTGAATCCACCACCCTAGGTTC 138304 |||||| || ||| |||||||||| | |||| ||||||||||||||| | ||| ||||| Sbjct 403718 TTGGGGTTC-CATGGTGTAGTGGTTAGCACTCTGGACTTTGAATCCAGCGACCTGGGTTC 403660 Query 138305 GACTCCTAGTGGGAGCTTAACCTCTCTTAGCT 138336 |||||| |||||| ||| |||| ||| || Sbjct 403659 GACTCCCGGTGGGACCTTGCTCTCTTTTATCT 403628 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 588756967187800