Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Gossypium_20barbadense_20[genbank_20GCA_5F001856525.1_202016-11-03] 29,751 sequences; 2,566,742,836 total letters Query= NC_014789.1 Length=184409 Score E Sequences producing significant alignments: (Bits) Value seq7139 140 4e-28 seq27182 136 5e-27 seq21511 102 1e-16 seq19704 98.7 1e-15 seq25332 96.9 4e-15 seq216 86.0 7e-12 >seq7139 Length=440615 Score = 140 bits (154), Expect = 4e-28 Identities = 251/364 (69%), Gaps = 2/364 (1%) Strand=Plus/Plus Query 9194 ATCAAAGCGACCTGGACGAAGGAGCGCGTCATCAAGGATATCAACGCGATTCGTCGCGGC 9253 |||||| || ||||| | | | ||| |||||| || ||| | | || || || || Sbjct 160780 ATCAAACCGTCCTGGCCTCAACAAAGCGGAATCAAGAATGTCAGCTCTGTTAGTTGCTGC 160839 Query 9254 GATGACAACAATACCTGTTTCATTATCAAAACCATCCATCTCTGTCAAAAGTTGGTTAAT 9313 || || | ||||| || | | || ||||||||||| || |||||||| ||||||| Sbjct 160840 AATTACGATGATACCGGTGTTACCCTCGAAACCATCCATTTCGGTCAAAAGCTGGTTAAG 160899 Query 9314 AGTTTGTTCCCGTTCATCATTCGCTGGCATACCACCAGCACTGCGTTGCTTTCCCACGGC 9373 |||||| || | ||||||||| || | ||||| | | ||| ||| ||||| Sbjct 160900 AGTTTGCTCTCTCTCATCATTCCCTCCACCAATACCAGTTCCTCTTTGTCGTCCAACGGC 160959 Query 9374 ATCAATCTCATCAATGAAGACAATACATGGTTGATTTTCGCGGGCGATTTCAAAGAGATC 9433 |||||| ||||| | ||||| ||||| || ||| || ||| | | || ||||| Sbjct 160960 ATCAATTTCATCCACAAAGACGATACAGGGGGCATTCTCCTTGGCCTTCTTGAAAAGATC 161019 Query 9434 GCGAACCCTTTTGGCGCCCACACCAACAAACATCTCCACAAAGTTTGCGGCGGAACATTG 9493 ||||| | || || |||||||||||||| || ||||| | | ||||| || | Sbjct 161020 ACGAACTCGAGAAGCACCAACACCAACAAACATTTCAACAAACTCAGAACCGGAA-ATGG 161078 Query 9494 -GATGAAGGGGACATTAGATTCACCCGCAATGGCTCGGGCGAGAAGAGTCTTACCCGTAC 9552 || ||| || ||| || |||||| ||||| || || ||||||||||| || || | Sbjct 161079 AGAAGAATGGCACACCAGCTTCACCGGCAATTGCCTTAGCAAGAAGAGTCTTTCCGGTTC 161138 Query 9553 CTGG 9556 | || Sbjct 161139 CAGG 161142 >seq27182 Length=171535 Score = 136 bits (150), Expect = 5e-27 Identities = 250/364 (69%), Gaps = 2/364 (1%) Strand=Plus/Plus Query 9194 ATCAAAGCGACCTGGACGAAGGAGCGCGTCATCAAGGATATCAACGCGATTCGTCGCGGC 9253 |||||| || ||||| | | | ||| |||||| || ||| | | || || || || Sbjct 138778 ATCAAACCGTCCTGGCCTCAACAAAGCGGAATCAAGAATGTCAGCTCTGTTAGTTGCTGC 138837 Query 9254 GATGACAACAATACCTGTTTCATTATCAAAACCATCCATCTCTGTCAAAAGTTGGTTAAT 9313 || || | ||||| || | | || ||||||||||| || |||||||| ||||||| Sbjct 138838 AATTACGATGATACCGGTGTTACCCTCGAAACCATCCATTTCGGTCAAAAGCTGGTTAAG 138897 Query 9314 AGTTTGTTCCCGTTCATCATTCGCTGGCATACCACCAGCACTGCGTTGCTTTCCCACGGC 9373 |||||| || | ||||||||| || | ||||| | | ||| ||| ||||| Sbjct 138898 AGTTTGCTCTCTCTCATCATTCCCTCCACCAATACCAGTTCCTCTTTGTCGTCCAACGGC 138957 Query 9374 ATCAATCTCATCAATGAAGACAATACATGGTTGATTTTCGCGGGCGATTTCAAAGAGATC 9433 |||||| ||||| | ||||| ||||| || ||| || ||| | | || ||||| Sbjct 138958 ATCAATTTCATCCACAAAGACGATACAGGGGGCATTCTCCTTGGCCTTCTTGAAAAGATC 139017 Query 9434 GCGAACCCTTTTGGCGCCCACACCAACAAACATCTCCACAAAGTTTGCGGCGGAACATTG 9493 ||||| | || || |||||||||||||| || ||||| | | | ||| || | Sbjct 139018 ACGAACTCGAGAAGCACCAACACCAACAAACATTTCAACAAACTCGGAACCTGAA-ATGG 139076 Query 9494 -GATGAAGGGGACATTAGATTCACCCGCAATGGCTCGGGCGAGAAGAGTCTTACCCGTAC 9552 || ||| || ||| || |||||| ||||| || || ||||||||||| || || | Sbjct 139077 AGAAGAACGGCACACCAGCTTCACCAGCAATTGCCTTAGCAAGAAGAGTCTTTCCGGTTC 139136 Query 9553 CTGG 9556 | || Sbjct 139137 CAGG 139140 >seq21511 Length=123759 Score = 102 bits (112), Expect = 1e-16 Identities = 307/469 (65%), Gaps = 14/469 (3%) Strand=Plus/Minus Query 9224 ATCAAGGATATCAACGCGATTCGTCGCGGCGATGACAACAATACCTGTTTCATTATCAAA 9283 ||| || || ||| | ||| || || || ||||||| || || || | | | ||| Sbjct 121728 ATCCAGAATTTCAGGCCTATTAGTAGCAGCAATGACAATAACTCCAGTATTACCAGTAAA 121669 Query 9284 ACCATCCATCTCTGTCAAAAGTTGGTTAATAGTTTGTTCCCGTTCATCATTCGCTGGCAT 9343 ||||||||| || ||||| || || || | |||||| |||| |||||||||| || Sbjct 121668 ACCATCCATTTCAGTCAACAGCTGATTCAAAGTTTGCTCCCTTTCATCATTCCCT---CC 121612 Query 9344 ACCA---CCAGCACTGCGTTGCTTTCCCACGGCATCAATCTCATCAATGAAGACAATACA 9400 |||| |||| | | || |||| || |||||||||||||| ||||| || | ||| Sbjct 121611 ACCAATCCCAGTTCCTCTCTGTCTTCCAACAGCATCAATCTCATCGATGAACACCAAACA 121552 Query 9401 TGGTTGATTTTCGCGGGCGATTTCAAAGAGATCGCGAACCCTTTTGGCGCCCACACCAAC 9460 ||| ||| | || | | ||| || || | ||| || || || || ||||| Sbjct 121551 TGGGGAATTAGCCTTTGCCTTGTTAAACAGGTCCCTAACTCTGGAAGCTCCAACGCCAAC 121492 Query 9461 AAACATCTCCACAAAGTTTGCGGCGGAACATTGGATGAAGGGGACATTAGATTCACCCGC 9520 ||||||||| | || | || | ||| | ||| || || | ||| || || Sbjct 121491 AAACATCTCGATGAACTCTGAACCAGAAAGGGAAAAGAAAGGAACCCCTGCTTCCCCTGC 121432 Query 9521 AATGGCTCGGGCGAGAAGAGTCTTACCCGTACCTGGCTTACCCGCGAGGAGGGCACCCCG 9580 |||||| ||| || | |||||||| || ||||| || || | |||| || Sbjct 121431 AATGGCCTTGGCCAGCAATGTCTTACCAGTCCCTGGAGGTCCAATTAGAA--GCACTCCT 121374 Query 9581 T--GGAATCTTGGCGCCACTTCC--AAAGTATCTCTCAGGTTGCTTGAGAAAATCCACAA 9636 | ||||| |||| ||| || | || | | ||| |||| || | || ||||| | Sbjct 121373 TTGGGAATTGTGGCACCAATTGCTGCAAATTTTTCTGGGGTT--TTTAAGAACTCCACTA 121316 Query 9637 TCTCTTCCAATTCATCTTTGGCGGCGTCAATCCCCTCAACATCGGTAAA 9685 ||||| || || | ||||| | ||||| || | |||||| |||| Sbjct 121315 CCTCTTGAAAATCTTGCTTGGCTTCATCAATACCAGCTACATCGTTAAA 121267 >seq19704 Length=164701 Score = 98.7 bits (108), Expect = 1e-15 Identities = 160/228 (70%), Gaps = 2/228 (1%) Strand=Plus/Minus Query 107168 TGCGGTCTTGGTGTACCAGCATTGAAGAGGGTTGGTGTTGCGTGAATGAACATACCTTGG 107227 || || ||||| || ||||||||||| || || || | || ||| | ||| | ||| Sbjct 135493 TGAGGCCTTGGAGTTCCAGCATTGAAAAGTGTGGGAGAAGCATGAGTAAACCATCTTTGA 135434 Query 107228 GACATCTTGTCGTATGTCTCCAAGACAGAATCAATGTCTTCCCCGTGGATGCCGATGGCC 107287 |||||| ||| || || | | ||||||||||||| | | || || || | || Sbjct 135433 GACATCATGTGATAAGTTTTTATAGCAGAATCAATGTCATTCTTATGAATTCCAACTGCA 135374 Query 107288 ACACGCATAAACATGTATTGGGGTGTTTCCATGAGGATGCCATCGAGCCGTTGA-AGATA 107346 || | ||| ||||||| |||||| |||| || | | || | || | || | || || Sbjct 135373 ACCCTCATTAACATGTGTTGGGGCCTTTCTAT-AACCTTCCCTTGAACTTTTAAGAGGTA 135315 Query 107347 GCTCTTCTCAAGGGTTTTGAGACCAAAGTAACCAAAATCATAGTCCCG 107394 | | ||||||||||||||| |||||| ||| || | ||| ||||||| Sbjct 135314 GGACCTCTCAAGGGTTTTGAAACCAAAATAATCATAGTCAAAGTCCCG 135267 >seq25332 Length=434290 Score = 96.9 bits (106), Expect = 4e-15 Identities = 161/229 (70%), Gaps = 4/229 (2%) Strand=Plus/Plus Query 107168 TGCGGTCTTGGTGTACCAGCATTGAAGAGGGTTGGTGTTGCGTGAATGAACATACCTTGG 107227 || || ||||| || ||||||||||| || || || | || ||| | ||| | ||| Sbjct 185730 TGAGGCCTTGGAGTTCCAGCATTGAAAAGTGTGGGAGAAGCATGAGTAAACCATCTTTGA 185789 Query 107228 GACATCTTGTCGTATGTCTCCAAGACAGAATCAATGTCTTCCCCGTGGATGCCGATGGCC 107287 |||||| ||| || || | | ||||||||||||| | | || || || | || Sbjct 185790 GACATCATGTGATAAGTTTTTATAGCAGAATCAATGTCATTCTTATGAATTCCAACTGCA 185849 Query 107288 ACACGCATAAACATGTATTGGGGTGTTTCCATGAGGATGCCATCGAGCCGTTGAAGA--T 107345 || | ||| ||||||| |||||| |||| || | | || | || | || |||| | Sbjct 185850 ACCCTCATTAACATGTGTTGGGGCCTTTCTAT-AACCTTCCCTTGA-ACTTTCAAGAGGT 185907 Query 107346 AGCTCTTCTCAAGGGTTTTGAGACCAAAGTAACCAAAATCATAGTCCCG 107394 || | ||||||||||||||| |||||| ||| || | ||| ||||||| Sbjct 185908 AGGACCTCTCAAGGGTTTTGAAACCAAAATAATCATAGTCAAAGTCCCG 185956 >seq216 Length=206475 Score = 86.0 bits (94), Expect = 7e-12 Identities = 190/283 (67%), Gaps = 14/283 (5%) Strand=Plus/Plus Query 9281 AAAACCATCCATCTCTGTCAAAAGTTGGTTAATAGTTTGTTCCCGTTCATCATTCGCTGG 9340 ||| ||||||||||| |||| | ||||| || || || || | ||||||||| || Sbjct 161969 AAATCCATCCATCTCAGTCAGCAACTGGTTGATTGTCTGCTCTCTTTCATCATTTCCT-- 162026 Query 9341 CATACCA--CCAGCACTGCGTTGCTTTCCCACGGCATCAATCTCATCAATGAAGACAATA 9398 | | | | ||||| | | || | || || ||||| |||||||| ||||| ||||| Sbjct 162027 CCTCCAAGCCCAGCTCCTCTCTGTCTCCCAACAGCATCGATCTCATCTATGAATACAATG 162086 Query 9399 CATGG-----TTGATTTTCGCGGGCGATTTCAAAGAGATCGCGAACCCTTTTGGCGCCCA 9453 || || | |||||| || |||| || | ||| | ||||| ||||| | Sbjct 162087 CAAGGCGCTTTGGATTTT-----GCCTTTTCGAACAAATCCCTTACCCTGGACGCGCCTA 162141 Query 9454 CACCAACAAACATCTCCACAAAGTTTGCGGCGGAACATTGGATGAAGGGGACATTAGATT 9513 | ||||| |||| ||||||||| | | || | ||| || ||||| || | || Sbjct 162142 CTCCAACGAACAACTCCACAAACTCCGAAGCTGCGCATGAGAAAAAGGGCACCCCGGCTT 162201 Query 9514 CACCCGCAATGGCTCGGGCGAGAAGAGTCTTACCCGTACCTGG 9556 | || || | ||||| || | |||||||| || ||||| || Sbjct 162202 CCCCTGCCACGGCTCTCGCCAATAGAGTCTTGCCGGTACCAGG 162244 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 589761393515240