Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Gossypium_20barbadense_20[genbank_20GCA_5F001856525.1_202016-11-03] 29,751 sequences; 2,566,742,836 total letters Query= NC_015960.1 Length=175699 Score E Sequences producing significant alignments: (Bits) Value seq12755 118 1e-21 seq19704 102 9e-17 seq25332 93.3 5e-14 seq12271 86.0 7e-12 seq7996 86.0 7e-12 >seq12755 Length=243795 Score = 118 bits (130), Expect = 1e-21 Identities = 148/203 (73%), Gaps = 0/203 (0%) Strand=Plus/Minus Query 48360 CCTCCTTGATCTATATATCTGGCAGTATTGTTATAAACTCTTAACATTGGGACAATACCA 48419 ||||||||||| | ||||| ||||||| || | || | | |||||||||||| ||| Sbjct 40244 CCTCCTTGATCAACATATCGAGCAGTATCATTGAACACCCGCAGCATTGGGACAATTCCA 40185 Query 48420 TTTGATATACCATTGGTTCCCGAAATATAACTTCCACTAGCTCTTATATTACTAATTGAA 48479 || ||| ||||||| ||||| ||||||||| || | |||| ||||| || ||| Sbjct 40184 TTAGATGTACCATTTGTTCCACGAATATAACTACCTGTGGCTCGAATATTGTGAACAGAA 40125 Query 48480 ATACCTATACCACCTGCCATTTTAGATATTAGAGCACACCGTTTAAGGGTATCATAAATT 48539 | ||| || || || || ||| || | ||||||| || | || ||||| ||| Sbjct 40124 ACACCAATTCCTCCAGCTGATTTGCTGATAACAGCACACTCCTTCAAAGTTTCATATATT 40065 Query 48540 CCTTCTATACTATCATCTATCAT 48562 ||||| |||||||||||| |||| Sbjct 40064 CCTTCAATACTATCATCTTTCAT 40042 >seq19704 Length=164701 Score = 102 bits (112), Expect = 9e-17 Identities = 145/204 (71%), Gaps = 0/204 (0%) Strand=Plus/Minus Query 48360 CCTCCTTGATCTATATATCTGGCAGTATTGTTATAAACTCTTAACATTGGGACAATACCA 48419 ||||||||||| | ||| | ||||| | || | || | | |||||||||||| ||| Sbjct 135825 CCTCCTTGATCAACATAACGAGCAGTGTCATTGAACACCCGCAGCATTGGGACAATGCCA 135766 Query 48420 TTTGATATACCATTGGTTCCCGAAATATAACTTCCACTAGCTCTTATATTACTAATTGAA 48479 || ||| ||||||| ||||| ||| ||||| | |||| | ||||| || ||| Sbjct 135765 TTAGATGTACCATTTGTTCCATGAATGTAACTACTTGTAGCCCGAATATTGTGAACTGAG 135706 Query 48480 ATACCTATACCACCTGCCATTTTAGATATTAGAGCACACCGTTTAAGGGTATCATAAATT 48539 | ||| || || || || ||| |||| ||||||| || | || ||||| ||| Sbjct 135705 ACACCAATTCCTCCAGCTGATTTGCTGATTATAGCACACTCCTTCAAAGTGTCATATATT 135646 Query 48540 CCTTCTATACTATCATCTATCATA 48563 || || |||||||||||| ||||| Sbjct 135645 CCCTCAATACTATCATCTTTCATA 135622 Score = 82.4 bits (90), Expect = 9e-11 Identities = 89/118 (75%), Gaps = 0/118 (0%) Strand=Plus/Minus Query 47343 AGTACTCTACGGCTATATATATTACTTGTATATGGTTCTATAGATTCATTATTTCCAAAA 47402 || |||||||| ||||| ||||| |||||||||||| | | ||||||||||||| | Sbjct 137788 AGAACTCTACGACTATAGATATTGGATGTATATGGTTCAAAGCACTCATTATTTCCAAGA 137729 Query 47403 ATTTGAGCAGTTGATGCTGTAGGCATGGATGCAACTAATAAGCTATTTCTTACTCCAT 47460 || || ||||||||| || ||||| | ||| | || | |||||| ||||||| Sbjct 137728 ATCTGGCTAGTTGATGCAGTTGGCATAGGTGCTAACAAAAGTGAATTTCTCACTCCAT 137671 >seq25332 Length=434290 Score = 93.3 bits (102), Expect = 5e-14 Identities = 143/204 (70%), Gaps = 0/204 (0%) Strand=Plus/Plus Query 48360 CCTCCTTGATCTATATATCTGGCAGTATTGTTATAAACTCTTAACATTGGGACAATACCA 48419 ||||||||||| | ||| | ||||| | || | || | | |||||||||||| ||| Sbjct 185398 CCTCCTTGATCAACATAACGAGCAGTGTCATTGAACACCCGCAGCATTGGGACAATGCCA 185457 Query 48420 TTTGATATACCATTGGTTCCCGAAATATAACTTCCACTAGCTCTTATATTACTAATTGAA 48479 || ||| ||||||| ||||| ||| ||||| | |||| | ||||| || ||| Sbjct 185458 TTAGATGTACCATTTGTTCCACGAATGTAACTACTTGTAGCCCGAATATTGTGAACTGAG 185517 Query 48480 ATACCTATACCACCTGCCATTTTAGATATTAGAGCACACCGTTTAAGGGTATCATAAATT 48539 | ||| || || || || ||| || | ||||||| || | || ||||| ||| Sbjct 185518 ACACCAATTCCTCCAGCTGATTTGCTGATAATAGCACACTCCTTCAAAGTGTCATATATT 185577 Query 48540 CCTTCTATACTATCATCTATCATA 48563 || || ||||| |||||| ||||| Sbjct 185578 CCCTCAATACTGTCATCTTTCATA 185601 Score = 82.4 bits (90), Expect = 9e-11 Identities = 89/118 (75%), Gaps = 0/118 (0%) Strand=Plus/Plus Query 47343 AGTACTCTACGGCTATATATATTACTTGTATATGGTTCTATAGATTCATTATTTCCAAAA 47402 || |||||||| ||||| ||||| |||||||||||| | | ||||||||||||| | Sbjct 183430 AGAACTCTACGACTATAGATATTGGATGTATATGGTTCAAAGCACTCATTATTTCCAAGA 183489 Query 47403 ATTTGAGCAGTTGATGCTGTAGGCATGGATGCAACTAATAAGCTATTTCTTACTCCAT 47460 || || ||||||||| || ||||| | ||| | || | |||||| ||||||| Sbjct 183490 ATCTGGCTAGTTGATGCAGTTGGCATAGGTGCTAACAAAAGTGAATTTCTCACTCCAT 183547 >seq12271 Length=300424 Score = 86.0 bits (94), Expect = 7e-12 Identities = 76/95 (80%), Gaps = 0/95 (0%) Strand=Plus/Plus Query 18961 CATGCAAAATCACAATGTAGTCCCTCGTCTCTACTTATCAATTCATTAGAAAATGTTAAA 19020 || ||||| ||||| || || ||||| |||||| ||| | ||||| || ||||| ||| Sbjct 217720 CAAGCAAAGTCACAGTGAAGCCCCTCATCTCTAGATATAAGCTCATTTGAGAATGTCAAA 217779 Query 19021 CCAGGCATCAGTCCTCttttttttAACCAGAATAT 19055 |||||||||||||| || ||||| | |||||| || Sbjct 217780 CCAGGCATCAGTCCCCTCTTTTTAAGCCAGAAAAT 217814 >seq7996 Length=234756 Score = 86.0 bits (94), Expect = 7e-12 Identities = 76/95 (80%), Gaps = 0/95 (0%) Strand=Plus/Plus Query 18961 CATGCAAAATCACAATGTAGTCCCTCGTCTCTACTTATCAATTCATTAGAAAATGTTAAA 19020 || ||||| ||||| || || ||||| |||||| ||| | ||||| || ||||| ||| Sbjct 225332 CAAGCAAAGTCACAGTGAAGCCCCTCATCTCTAGATATAAGCTCATTTGAGAATGTCAAA 225391 Query 19021 CCAGGCATCAGTCCTCttttttttAACCAGAATAT 19055 |||||||||||||| || ||||| | |||||| || Sbjct 225392 CCAGGCATCAGTCCCCTCTTTTTAAGCCAGAAAAT 225426 Score = 86.0 bits (94), Expect = 7e-12 Identities = 76/95 (80%), Gaps = 0/95 (0%) Strand=Plus/Plus Query 18961 CATGCAAAATCACAATGTAGTCCCTCGTCTCTACTTATCAATTCATTAGAAAATGTTAAA 19020 || ||||| ||||| || || ||||| |||||| ||| | ||||| || ||||| ||| Sbjct 227325 CAAGCAAAGTCACAGTGAAGCCCCTCATCTCTAGATATAAGCTCATTTGAGAATGTCAAA 227384 Query 19021 CCAGGCATCAGTCCTCttttttttAACCAGAATAT 19055 |||||||||||||| || ||||| | |||||| || Sbjct 227385 CCAGGCATCAGTCCCCTCTTTTTAAGCCAGAAAAT 227419 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 561899758763640