Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Gossypium_20barbadense_20[genbank_20GCA_5F001856525.1_202016-11-03]
29,751 sequences; 2,566,742,836 total letters
Query= NC_015960.1
Length=175699
Score E
Sequences producing significant alignments: (Bits) Value
seq12755 118 1e-21
seq19704 102 9e-17
seq25332 93.3 5e-14
seq12271 86.0 7e-12
seq7996 86.0 7e-12
>seq12755
Length=243795
Score = 118 bits (130), Expect = 1e-21
Identities = 148/203 (73%), Gaps = 0/203 (0%)
Strand=Plus/Minus
Query 48360 CCTCCTTGATCTATATATCTGGCAGTATTGTTATAAACTCTTAACATTGGGACAATACCA 48419
||||||||||| | ||||| ||||||| || | || | | |||||||||||| |||
Sbjct 40244 CCTCCTTGATCAACATATCGAGCAGTATCATTGAACACCCGCAGCATTGGGACAATTCCA 40185
Query 48420 TTTGATATACCATTGGTTCCCGAAATATAACTTCCACTAGCTCTTATATTACTAATTGAA 48479
|| ||| ||||||| ||||| ||||||||| || | |||| ||||| || |||
Sbjct 40184 TTAGATGTACCATTTGTTCCACGAATATAACTACCTGTGGCTCGAATATTGTGAACAGAA 40125
Query 48480 ATACCTATACCACCTGCCATTTTAGATATTAGAGCACACCGTTTAAGGGTATCATAAATT 48539
| ||| || || || || ||| || | ||||||| || | || ||||| |||
Sbjct 40124 ACACCAATTCCTCCAGCTGATTTGCTGATAACAGCACACTCCTTCAAAGTTTCATATATT 40065
Query 48540 CCTTCTATACTATCATCTATCAT 48562
||||| |||||||||||| ||||
Sbjct 40064 CCTTCAATACTATCATCTTTCAT 40042
>seq19704
Length=164701
Score = 102 bits (112), Expect = 9e-17
Identities = 145/204 (71%), Gaps = 0/204 (0%)
Strand=Plus/Minus
Query 48360 CCTCCTTGATCTATATATCTGGCAGTATTGTTATAAACTCTTAACATTGGGACAATACCA 48419
||||||||||| | ||| | ||||| | || | || | | |||||||||||| |||
Sbjct 135825 CCTCCTTGATCAACATAACGAGCAGTGTCATTGAACACCCGCAGCATTGGGACAATGCCA 135766
Query 48420 TTTGATATACCATTGGTTCCCGAAATATAACTTCCACTAGCTCTTATATTACTAATTGAA 48479
|| ||| ||||||| ||||| ||| ||||| | |||| | ||||| || |||
Sbjct 135765 TTAGATGTACCATTTGTTCCATGAATGTAACTACTTGTAGCCCGAATATTGTGAACTGAG 135706
Query 48480 ATACCTATACCACCTGCCATTTTAGATATTAGAGCACACCGTTTAAGGGTATCATAAATT 48539
| ||| || || || || ||| |||| ||||||| || | || ||||| |||
Sbjct 135705 ACACCAATTCCTCCAGCTGATTTGCTGATTATAGCACACTCCTTCAAAGTGTCATATATT 135646
Query 48540 CCTTCTATACTATCATCTATCATA 48563
|| || |||||||||||| |||||
Sbjct 135645 CCCTCAATACTATCATCTTTCATA 135622
Score = 82.4 bits (90), Expect = 9e-11
Identities = 89/118 (75%), Gaps = 0/118 (0%)
Strand=Plus/Minus
Query 47343 AGTACTCTACGGCTATATATATTACTTGTATATGGTTCTATAGATTCATTATTTCCAAAA 47402
|| |||||||| ||||| ||||| |||||||||||| | | ||||||||||||| |
Sbjct 137788 AGAACTCTACGACTATAGATATTGGATGTATATGGTTCAAAGCACTCATTATTTCCAAGA 137729
Query 47403 ATTTGAGCAGTTGATGCTGTAGGCATGGATGCAACTAATAAGCTATTTCTTACTCCAT 47460
|| || ||||||||| || ||||| | ||| | || | |||||| |||||||
Sbjct 137728 ATCTGGCTAGTTGATGCAGTTGGCATAGGTGCTAACAAAAGTGAATTTCTCACTCCAT 137671
>seq25332
Length=434290
Score = 93.3 bits (102), Expect = 5e-14
Identities = 143/204 (70%), Gaps = 0/204 (0%)
Strand=Plus/Plus
Query 48360 CCTCCTTGATCTATATATCTGGCAGTATTGTTATAAACTCTTAACATTGGGACAATACCA 48419
||||||||||| | ||| | ||||| | || | || | | |||||||||||| |||
Sbjct 185398 CCTCCTTGATCAACATAACGAGCAGTGTCATTGAACACCCGCAGCATTGGGACAATGCCA 185457
Query 48420 TTTGATATACCATTGGTTCCCGAAATATAACTTCCACTAGCTCTTATATTACTAATTGAA 48479
|| ||| ||||||| ||||| ||| ||||| | |||| | ||||| || |||
Sbjct 185458 TTAGATGTACCATTTGTTCCACGAATGTAACTACTTGTAGCCCGAATATTGTGAACTGAG 185517
Query 48480 ATACCTATACCACCTGCCATTTTAGATATTAGAGCACACCGTTTAAGGGTATCATAAATT 48539
| ||| || || || || ||| || | ||||||| || | || ||||| |||
Sbjct 185518 ACACCAATTCCTCCAGCTGATTTGCTGATAATAGCACACTCCTTCAAAGTGTCATATATT 185577
Query 48540 CCTTCTATACTATCATCTATCATA 48563
|| || ||||| |||||| |||||
Sbjct 185578 CCCTCAATACTGTCATCTTTCATA 185601
Score = 82.4 bits (90), Expect = 9e-11
Identities = 89/118 (75%), Gaps = 0/118 (0%)
Strand=Plus/Plus
Query 47343 AGTACTCTACGGCTATATATATTACTTGTATATGGTTCTATAGATTCATTATTTCCAAAA 47402
|| |||||||| ||||| ||||| |||||||||||| | | ||||||||||||| |
Sbjct 183430 AGAACTCTACGACTATAGATATTGGATGTATATGGTTCAAAGCACTCATTATTTCCAAGA 183489
Query 47403 ATTTGAGCAGTTGATGCTGTAGGCATGGATGCAACTAATAAGCTATTTCTTACTCCAT 47460
|| || ||||||||| || ||||| | ||| | || | |||||| |||||||
Sbjct 183490 ATCTGGCTAGTTGATGCAGTTGGCATAGGTGCTAACAAAAGTGAATTTCTCACTCCAT 183547
>seq12271
Length=300424
Score = 86.0 bits (94), Expect = 7e-12
Identities = 76/95 (80%), Gaps = 0/95 (0%)
Strand=Plus/Plus
Query 18961 CATGCAAAATCACAATGTAGTCCCTCGTCTCTACTTATCAATTCATTAGAAAATGTTAAA 19020
|| ||||| ||||| || || ||||| |||||| ||| | ||||| || ||||| |||
Sbjct 217720 CAAGCAAAGTCACAGTGAAGCCCCTCATCTCTAGATATAAGCTCATTTGAGAATGTCAAA 217779
Query 19021 CCAGGCATCAGTCCTCttttttttAACCAGAATAT 19055
|||||||||||||| || ||||| | |||||| ||
Sbjct 217780 CCAGGCATCAGTCCCCTCTTTTTAAGCCAGAAAAT 217814
>seq7996
Length=234756
Score = 86.0 bits (94), Expect = 7e-12
Identities = 76/95 (80%), Gaps = 0/95 (0%)
Strand=Plus/Plus
Query 18961 CATGCAAAATCACAATGTAGTCCCTCGTCTCTACTTATCAATTCATTAGAAAATGTTAAA 19020
|| ||||| ||||| || || ||||| |||||| ||| | ||||| || ||||| |||
Sbjct 225332 CAAGCAAAGTCACAGTGAAGCCCCTCATCTCTAGATATAAGCTCATTTGAGAATGTCAAA 225391
Query 19021 CCAGGCATCAGTCCTCttttttttAACCAGAATAT 19055
|||||||||||||| || ||||| | |||||| ||
Sbjct 225392 CCAGGCATCAGTCCCCTCTTTTTAAGCCAGAAAAT 225426
Score = 86.0 bits (94), Expect = 7e-12
Identities = 76/95 (80%), Gaps = 0/95 (0%)
Strand=Plus/Plus
Query 18961 CATGCAAAATCACAATGTAGTCCCTCGTCTCTACTTATCAATTCATTAGAAAATGTTAAA 19020
|| ||||| ||||| || || ||||| |||||| ||| | ||||| || ||||| |||
Sbjct 227325 CAAGCAAAGTCACAGTGAAGCCCCTCATCTCTAGATATAAGCTCATTTGAGAATGTCAAA 227384
Query 19021 CCAGGCATCAGTCCTCttttttttAACCAGAATAT 19055
|||||||||||||| || ||||| | |||||| ||
Sbjct 227385 CCAGGCATCAGTCCCCTCTTTTTAAGCCAGAAAAT 227419
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 561899758763640
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |