Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Gossypium_20barbadense_20[genbank_20GCA_5F001856525.1_202016-11-03] 29,751 sequences; 2,566,742,836 total letters Query= NC_019401.1 Length=358663 Score E Sequences producing significant alignments: (Bits) Value seq27806 86.0 1e-11 seq6287 86.0 1e-11 seq28372 84.2 5e-11 seq11000 84.2 5e-11 >seq27806 Length=466308 Score = 86.0 bits (94), Expect = 1e-11 Identities = 114/153 (75%), Gaps = 4/153 (3%) Strand=Plus/Minus Query 150675 GCAATATGTTAAAACCTGCTCTATCTCGCGGTGAAATTCG-TGTCATCGGTGCAACAAC- 150732 ||||| |||| || ||| || ||| || ||| | || ||| || || ||||| || Sbjct 120764 GCAATCTGTTGAAGCCTATGCTTGGTCGGGGAGAACTGCGATGT-ATTGGGGCAACGACT 120706 Query 150733 CTACGATGAATATCGTAAACACATTGAAAAAGATGCAGCACTACAGCGTCGTTTCATGAA 150792 ||| ||||||||||||||| ||||||| |||||| | || || | ||||||||| | | Sbjct 120705 CTA-GATGAATATCGTAAATACATTGAGAAAGATCCTGCCCTGGAACGTCGTTTCCAGCA 120647 Query 150793 GGTTGATATTGTTGAACCGACACTTGAAGAAAC 150825 |||| || ||| | |||| ||| | ||||| || Sbjct 120646 GGTTTATGTTGATCAACCAACAGTAGAAGATAC 120614 >seq6287 Length=328454 Score = 86.0 bits (94), Expect = 1e-11 Identities = 114/153 (75%), Gaps = 4/153 (3%) Strand=Plus/Plus Query 150675 GCAATATGTTAAAACCTGCTCTATCTCGCGGTGAAATTCG-TGTCATCGGTGCAACAAC- 150732 ||||| |||| || ||| || ||| || ||| | || ||| || || ||||| || Sbjct 202385 GCAATCTGTTGAAGCCTATGCTTGGTCGGGGAGAACTGCGATGT-ATTGGGGCAACGACT 202443 Query 150733 CTACGATGAATATCGTAAACACATTGAAAAAGATGCAGCACTACAGCGTCGTTTCATGAA 150792 ||| ||||||||||||||| ||||||| |||||| | || || | ||||||||| | | Sbjct 202444 CTA-GATGAATATCGTAAATACATTGAGAAAGATCCTGCCCTGGAACGTCGTTTCCAGCA 202502 Query 150793 GGTTGATATTGTTGAACCGACACTTGAAGAAAC 150825 |||| || ||| | |||| ||| | ||||| || Sbjct 202503 GGTTTATGTTGATCAACCAACAGTAGAAGATAC 202535 Score = 86.0 bits (94), Expect = 1e-11 Identities = 114/153 (75%), Gaps = 4/153 (3%) Strand=Plus/Plus Query 150675 GCAATATGTTAAAACCTGCTCTATCTCGCGGTGAAATTCG-TGTCATCGGTGCAACAAC- 150732 ||||| |||| || ||| || ||| || ||| | || ||| || || ||||| || Sbjct 207780 GCAATCTGTTGAAGCCTATGCTTGGTCGGGGAGAACTGCGATGT-ATTGGGGCAACGACT 207838 Query 150733 CTACGATGAATATCGTAAACACATTGAAAAAGATGCAGCACTACAGCGTCGTTTCATGAA 150792 ||| ||||||||||||||| ||||||| |||||| | || || | ||||||||| | | Sbjct 207839 CTA-GATGAATATCGTAAATACATTGAGAAAGATCCTGCCCTGGAACGTCGTTTCCAGCA 207897 Query 150793 GGTTGATATTGTTGAACCGACACTTGAAGAAAC 150825 |||| || ||| | |||| ||| | ||||| || Sbjct 207898 GGTTTATGTTGATCAACCAACAGTAGAAGATAC 207930 >seq28372 Length=150438 Score = 84.2 bits (92), Expect = 5e-11 Identities = 94/126 (75%), Gaps = 0/126 (0%) Strand=Plus/Plus Query 150700 TCGCGGTGAAATTCGTGTCATCGGTGCAACAACCTACGATGAATATCGTAAACACATTGA 150759 ||| || ||| | || |||||| |||||||| ||||||||||||||| ||||||| Sbjct 43548 TCGGGGAGAACTGCGATGCATCGGGGCAACAACACTGGATGAATATCGTAAATACATTGA 43607 Query 150760 AAAAGATGCAGCACTACAGCGTCGTTTCATGAAGGTTGATATTGTTGAACCGACACTTGA 150819 ||||||| | || || |||||||||| | ||||| || ||| | | || || | || Sbjct 43608 AAAAGATCCTGCTCTGGAGCGTCGTTTTCAGCAGGTTTATGTTGGTCAGCCATCAGTGGA 43667 Query 150820 AGAAAC 150825 ||| || Sbjct 43668 AGATAC 43673 >seq11000 Length=319421 Score = 84.2 bits (92), Expect = 5e-11 Identities = 94/126 (75%), Gaps = 0/126 (0%) Strand=Plus/Minus Query 150700 TCGCGGTGAAATTCGTGTCATCGGTGCAACAACCTACGATGAATATCGTAAACACATTGA 150759 ||| || ||| | || |||||| |||||||| ||||||||||||||| ||||||| Sbjct 181563 TCGGGGAGAACTGCGATGCATCGGGGCAACAACACTGGATGAATATCGTAAATACATTGA 181504 Query 150760 AAAAGATGCAGCACTACAGCGTCGTTTCATGAAGGTTGATATTGTTGAACCGACACTTGA 150819 ||||||| | || || |||||||||| | ||||| || ||| | | || || | || Sbjct 181503 AAAAGATCCTGCTCTGGAGCGTCGTTTTCAGCAGGTTTATGTTGGTCAGCCATCAGTGGA 181444 Query 150820 AGAAAC 150825 ||| || Sbjct 181443 AGATAC 181438 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1147152956111998