Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Gossypium_20barbadense_20[genbank_20GCA_5F001856525.1_202016-11-03]
29,751 sequences; 2,566,742,836 total letters
Query= NC_019401.1
Length=358663
Score E
Sequences producing significant alignments: (Bits) Value
seq27806 86.0 1e-11
seq6287 86.0 1e-11
seq28372 84.2 5e-11
seq11000 84.2 5e-11
>seq27806
Length=466308
Score = 86.0 bits (94), Expect = 1e-11
Identities = 114/153 (75%), Gaps = 4/153 (3%)
Strand=Plus/Minus
Query 150675 GCAATATGTTAAAACCTGCTCTATCTCGCGGTGAAATTCG-TGTCATCGGTGCAACAAC- 150732
||||| |||| || ||| || ||| || ||| | || ||| || || ||||| ||
Sbjct 120764 GCAATCTGTTGAAGCCTATGCTTGGTCGGGGAGAACTGCGATGT-ATTGGGGCAACGACT 120706
Query 150733 CTACGATGAATATCGTAAACACATTGAAAAAGATGCAGCACTACAGCGTCGTTTCATGAA 150792
||| ||||||||||||||| ||||||| |||||| | || || | ||||||||| | |
Sbjct 120705 CTA-GATGAATATCGTAAATACATTGAGAAAGATCCTGCCCTGGAACGTCGTTTCCAGCA 120647
Query 150793 GGTTGATATTGTTGAACCGACACTTGAAGAAAC 150825
|||| || ||| | |||| ||| | ||||| ||
Sbjct 120646 GGTTTATGTTGATCAACCAACAGTAGAAGATAC 120614
>seq6287
Length=328454
Score = 86.0 bits (94), Expect = 1e-11
Identities = 114/153 (75%), Gaps = 4/153 (3%)
Strand=Plus/Plus
Query 150675 GCAATATGTTAAAACCTGCTCTATCTCGCGGTGAAATTCG-TGTCATCGGTGCAACAAC- 150732
||||| |||| || ||| || ||| || ||| | || ||| || || ||||| ||
Sbjct 202385 GCAATCTGTTGAAGCCTATGCTTGGTCGGGGAGAACTGCGATGT-ATTGGGGCAACGACT 202443
Query 150733 CTACGATGAATATCGTAAACACATTGAAAAAGATGCAGCACTACAGCGTCGTTTCATGAA 150792
||| ||||||||||||||| ||||||| |||||| | || || | ||||||||| | |
Sbjct 202444 CTA-GATGAATATCGTAAATACATTGAGAAAGATCCTGCCCTGGAACGTCGTTTCCAGCA 202502
Query 150793 GGTTGATATTGTTGAACCGACACTTGAAGAAAC 150825
|||| || ||| | |||| ||| | ||||| ||
Sbjct 202503 GGTTTATGTTGATCAACCAACAGTAGAAGATAC 202535
Score = 86.0 bits (94), Expect = 1e-11
Identities = 114/153 (75%), Gaps = 4/153 (3%)
Strand=Plus/Plus
Query 150675 GCAATATGTTAAAACCTGCTCTATCTCGCGGTGAAATTCG-TGTCATCGGTGCAACAAC- 150732
||||| |||| || ||| || ||| || ||| | || ||| || || ||||| ||
Sbjct 207780 GCAATCTGTTGAAGCCTATGCTTGGTCGGGGAGAACTGCGATGT-ATTGGGGCAACGACT 207838
Query 150733 CTACGATGAATATCGTAAACACATTGAAAAAGATGCAGCACTACAGCGTCGTTTCATGAA 150792
||| ||||||||||||||| ||||||| |||||| | || || | ||||||||| | |
Sbjct 207839 CTA-GATGAATATCGTAAATACATTGAGAAAGATCCTGCCCTGGAACGTCGTTTCCAGCA 207897
Query 150793 GGTTGATATTGTTGAACCGACACTTGAAGAAAC 150825
|||| || ||| | |||| ||| | ||||| ||
Sbjct 207898 GGTTTATGTTGATCAACCAACAGTAGAAGATAC 207930
>seq28372
Length=150438
Score = 84.2 bits (92), Expect = 5e-11
Identities = 94/126 (75%), Gaps = 0/126 (0%)
Strand=Plus/Plus
Query 150700 TCGCGGTGAAATTCGTGTCATCGGTGCAACAACCTACGATGAATATCGTAAACACATTGA 150759
||| || ||| | || |||||| |||||||| ||||||||||||||| |||||||
Sbjct 43548 TCGGGGAGAACTGCGATGCATCGGGGCAACAACACTGGATGAATATCGTAAATACATTGA 43607
Query 150760 AAAAGATGCAGCACTACAGCGTCGTTTCATGAAGGTTGATATTGTTGAACCGACACTTGA 150819
||||||| | || || |||||||||| | ||||| || ||| | | || || | ||
Sbjct 43608 AAAAGATCCTGCTCTGGAGCGTCGTTTTCAGCAGGTTTATGTTGGTCAGCCATCAGTGGA 43667
Query 150820 AGAAAC 150825
||| ||
Sbjct 43668 AGATAC 43673
>seq11000
Length=319421
Score = 84.2 bits (92), Expect = 5e-11
Identities = 94/126 (75%), Gaps = 0/126 (0%)
Strand=Plus/Minus
Query 150700 TCGCGGTGAAATTCGTGTCATCGGTGCAACAACCTACGATGAATATCGTAAACACATTGA 150759
||| || ||| | || |||||| |||||||| ||||||||||||||| |||||||
Sbjct 181563 TCGGGGAGAACTGCGATGCATCGGGGCAACAACACTGGATGAATATCGTAAATACATTGA 181504
Query 150760 AAAAGATGCAGCACTACAGCGTCGTTTCATGAAGGTTGATATTGTTGAACCGACACTTGA 150819
||||||| | || || |||||||||| | ||||| || ||| | | || || | ||
Sbjct 181503 AAAAGATCCTGCTCTGGAGCGTCGTTTTCAGCAGGTTTATGTTGGTCAGCCATCAGTGGA 181444
Query 150820 AGAAAC 150825
||| ||
Sbjct 181443 AGATAC 181438
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 1147152956111998
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |