Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Gossypium_20barbadense_20[genbank_20GCA_5F001856525.1_202016-11-03]
29,751 sequences; 2,566,742,836 total letters
Query= NC_019945.1
Length=132978
Score E
Sequences producing significant alignments: (Bits) Value
seq12924 107 2e-18
seq5610 100 2e-16
seq2874 100 2e-16
seq10219 98.7 8e-16
seq481 93.3 4e-14
seq6889 89.7 4e-13
seq25104 84.2 2e-11
seq14353 84.2 2e-11
>seq12924
Length=310248
Score = 107 bits (118), Expect = 2e-18
Identities = 146/204 (72%), Gaps = 0/204 (0%)
Strand=Plus/Plus
Query 28554 ATGCAAATATTTGTAAAAACATTAACGGGTAAAACCATTACCGCCGAAACGGAACCTTCA 28613
||||| |||||||| ||||| | ||||| || ||||| ||| ||| |||| |||
Sbjct 59582 ATGCAGATATTTGTGAAAACCCTTACGGGCAAGACCATCACCCTCGAGGTGGAAAGTTCT 59641
Query 28614 GAGACGGTGGCCGATCTCAAGCAAAAAATCGCCGACAAAGAGGGAGTGCCCGTAGATCAA 28673
|| ||| | | || ||||| || ||| ||||| || || | || |||| |||
Sbjct 59642 GATACGATTGATAATGTCAAGGCCAAGATCCAAGACAAGGAAGGGATCCCTCTAGACCAA 59701
Query 28674 CAGAGACTTATCTTTGCGGGCAAACAATTGGAAGATTCTAAAACTATGGCCGATTATAAC 28733
||||| ||||||||||| || |||||| | |||||| ||| | || ||||| |||
Sbjct 59702 CAGAGGCTTATCTTTGCAGGTAAACAACTTGAAGATGGCCGAACCCTCGCTGATTACAAC 59761
Query 28734 ATTCAAAAAGAATCTACTCTGCAC 28757
|| || ||||| ||||| || |||
Sbjct 59762 ATCCAGAAAGAGTCTACCCTCCAC 59785
Score = 89.7 bits (98), Expect = 4e-13
Identities = 142/204 (70%), Gaps = 0/204 (0%)
Strand=Plus/Plus
Query 28554 ATGCAAATATTTGTAAAAACATTAACGGGTAAAACCATTACCGCCGAAACGGAACCTTCA 28613
||||| || ||||| ||||| | || ||||||||||| ||| || |||| ||
Sbjct 59354 ATGCAGATCTTTGTGAAAACCCTTACTGGTAAAACCATCACCCTTGAGGTGGAAAGCTCC 59413
Query 28614 GAGACGGTGGCCGATCTCAAGCAAAAAATCGCCGACAAAGAGGGAGTGCCCGTAGATCAA 28673
|| || | | || ||||| |||||| |||||||| || | || ||| |||
Sbjct 59414 GATACTATTGATAATGTCAAGGCCAAAATCCAAGACAAAGAAGGCATTCCTCCAGACCAA 59473
Query 28674 CAGAGACTTATCTTTGCGGGCAAACAATTGGAAGATTCTAAAACTATGGCCGATTATAAC 28733
||||| ||||| ||||| || |||||| | || ||| |||| | ||||| || |||
Sbjct 59474 CAGAGGCTTATTTTTGCCGGAAAACAACTCGAGGATGGCCGAACTCTTGCCGACTACAAC 59533
Query 28734 ATTCAAAAAGAATCTACTCTGCAC 28757
|| ||||| || || || || |||
Sbjct 59534 ATCCAAAAGGAGTCCACCCTCCAC 59557
Score = 89.7 bits (98), Expect = 4e-13
Identities = 142/204 (70%), Gaps = 0/204 (0%)
Strand=Plus/Plus
Query 28554 ATGCAAATATTTGTAAAAACATTAACGGGTAAAACCATTACCGCCGAAACGGAACCTTCA 28613
||||| ||||| || ||||| | || || || ||||| ||| ||| |||| |||
Sbjct 73397 ATGCAGATATTCGTGAAAACTCTTACTGGCAAGACCATCACCCTCGAGGTGGAAAGTTCT 73456
Query 28614 GAGACGGTGGCCGATCTCAAGCAAAAAATCGCCGACAAAGAGGGAGTGCCCGTAGATCAA 28673
|| || | | || ||||| || ||| ||||| || || | || ||| |||
Sbjct 73457 GATACAATTGATAATGTCAAGGCCAAGATCCAAGACAAGGAAGGGATCCCACCAGACCAA 73516
Query 28674 CAGAGACTTATCTTTGCGGGCAAACAATTGGAAGATTCTAAAACTATGGCCGATTATAAC 28733
||||| ||||||||||| || ||||| | |||||| |||| | || ||||| |||
Sbjct 73517 CAGAGGCTTATCTTTGCCGGTAAACAGCTTGAAGATGGCCGAACTCTTGCGGATTACAAC 73576
Query 28734 ATTCAAAAAGAATCTACTCTGCAC 28757
|| || ||||| ||||| || |||
Sbjct 73577 ATCCAGAAAGAGTCTACCCTCCAC 73600
>seq5610
Length=141783
Score = 100 bits (110), Expect = 2e-16
Identities = 160/230 (70%), Gaps = 0/230 (0%)
Strand=Plus/Plus
Query 28554 ATGCAAATATTTGTAAAAACATTAACGGGTAAAACCATTACCGCCGAAACGGAACCTTCA 28613
|||||||| ||||| ||||| ||||| || || ||||| ||| |||| || |||
Sbjct 62205 ATGCAAATCTTTGTCAAAACCTTAACCGGCAAGACCATCACCCTCGAAGTCGAGAGTTCC 62264
Query 28614 GAGACGGTGGCCGATCTCAAGCAAAAAATCGCCGACAAAGAGGGAGTGCCCGTAGATCAA 28673
|| || | | | | | ||| || || ||||| || ||| | || || |||
Sbjct 62265 GACACCATCGACAACGTTAAGGCCAAGATTCAAGACAAGGAAGGAATCCCACCTGACCAA 62324
Query 28674 CAGAGACTTATCTTTGCGGGCAAACAATTGGAAGATTCTAAAACTATGGCCGATTATAAC 28733
||| | | ||||| || |||||||||||||||||| | || |||| ||||||||
Sbjct 62325 CAGCGTTTGATCTTCGCTGGCAAACAATTGGAAGATGGGAGGACCTTGGCTGATTATAAT 62384
Query 28734 ATTCAAAAAGAATCTACTCTGCACATGGTATTAAGATTACGAGGAGGGAT 28783
|| ||||| ||||| || || ||| | || || || | || ||||||||
Sbjct 62385 ATCCAAAAGGAATCCACCCTTCACCTTGTTTTGAGGCTTCGTGGAGGGAT 62434
Score = 93.3 bits (102), Expect = 4e-14
Identities = 143/204 (70%), Gaps = 0/204 (0%)
Strand=Plus/Plus
Query 28554 ATGCAAATATTTGTAAAAACATTAACGGGTAAAACCATTACCGCCGAAACGGAACCTTCA 28613
||||| || ||||| || || || || || ||||| || ||| || ||| ||
Sbjct 62433 ATGCAGATTTTTGTCAAGACTTTGACCGGCAAAACAATCACCTTGGAGGTTGAAAGCTCC 62492
Query 28614 GAGACGGTGGCCGATCTCAAGCAAAAAATCGCCGACAAAGAGGGAGTGCCCGTAGATCAA 28673
|| || | | | || | ||| ||| || || || || ||| | || |||||
Sbjct 62493 GATACCATTGACAATGTTAAGGCAAAGATTCAGGATAAGGAAGGAATCCCACCTGATCAG 62552
Query 28674 CAGAGACTTATCTTTGCGGGCAAACAATTGGAAGATTCTAAAACTATGGCCGATTATAAC 28733
|| || || |||||||| |||||||||||||||||| | ||| |||| |||||||||
Sbjct 62553 CAAAGGCTCATCTTTGCCGGCAAACAATTGGAAGATGGGAGGACTTTGGCTGATTATAAC 62612
Query 28734 ATTCAAAAAGAATCTACTCTGCAC 28757
||||| ||||| ||||| || |||
Sbjct 62613 ATTCAGAAAGAGTCTACCCTTCAC 62636
>seq2874
Length=261101
Score = 100 bits (110), Expect = 2e-16
Identities = 160/230 (70%), Gaps = 0/230 (0%)
Strand=Plus/Plus
Query 28554 ATGCAAATATTTGTAAAAACATTAACGGGTAAAACCATTACCGCCGAAACGGAACCTTCA 28613
|||||||| ||||| ||||| ||||| || || ||||| ||| |||| || |||
Sbjct 215850 ATGCAAATCTTTGTCAAAACCTTAACCGGCAAGACCATCACCCTCGAAGTCGAGAGTTCC 215909
Query 28614 GAGACGGTGGCCGATCTCAAGCAAAAAATCGCCGACAAAGAGGGAGTGCCCGTAGATCAA 28673
|| || | | | | | ||| || || ||||| || ||| | || || |||
Sbjct 215910 GACACCATCGACAACGTTAAGGCCAAGATTCAAGACAAGGAAGGAATCCCACCTGACCAA 215969
Query 28674 CAGAGACTTATCTTTGCGGGCAAACAATTGGAAGATTCTAAAACTATGGCCGATTATAAC 28733
||| | | ||||| || |||||||||||||||||| | || |||| ||||||||
Sbjct 215970 CAGCGTTTGATCTTCGCTGGCAAACAATTGGAAGATGGGAGGACCTTGGCTGATTATAAT 216029
Query 28734 ATTCAAAAAGAATCTACTCTGCACATGGTATTAAGATTACGAGGAGGGAT 28783
|| ||||| ||||| || || ||| | || || || | || ||||||||
Sbjct 216030 ATCCAAAAGGAATCCACCCTTCACCTTGTTTTGAGGCTTCGTGGAGGGAT 216079
Score = 93.3 bits (102), Expect = 4e-14
Identities = 143/204 (70%), Gaps = 0/204 (0%)
Strand=Plus/Plus
Query 28554 ATGCAAATATTTGTAAAAACATTAACGGGTAAAACCATTACCGCCGAAACGGAACCTTCA 28613
||||| || ||||| || || || || || ||||| || ||| || ||| ||
Sbjct 216078 ATGCAGATTTTTGTCAAGACTTTGACCGGCAAAACAATCACCTTGGAGGTTGAAAGCTCC 216137
Query 28614 GAGACGGTGGCCGATCTCAAGCAAAAAATCGCCGACAAAGAGGGAGTGCCCGTAGATCAA 28673
|| || | | | || | ||| ||| || || || || ||| | || |||||
Sbjct 216138 GATACCATTGACAATGTTAAGGCAAAGATTCAGGATAAGGAAGGAATCCCACCTGATCAG 216197
Query 28674 CAGAGACTTATCTTTGCGGGCAAACAATTGGAAGATTCTAAAACTATGGCCGATTATAAC 28733
|| || || |||||||| |||||||||||||||||| | ||| |||| |||||||||
Sbjct 216198 CAAAGGCTCATCTTTGCCGGCAAACAATTGGAAGATGGGAGGACTTTGGCTGATTATAAC 216257
Query 28734 ATTCAAAAAGAATCTACTCTGCAC 28757
||||| ||||| ||||| || |||
Sbjct 216258 ATTCAGAAAGAGTCTACCCTTCAC 216281
>seq10219
Length=308859
Score = 98.7 bits (108), Expect = 8e-16
Identities = 144/204 (71%), Gaps = 0/204 (0%)
Strand=Plus/Plus
Query 28554 ATGCAAATATTTGTAAAAACATTAACGGGTAAAACCATTACCGCCGAAACGGAACCTTCA 28613
||||| |||||||| ||||| | || || || ||||| ||| ||| |||| |||
Sbjct 22288 ATGCAGATATTTGTGAAAACCCTTACTGGCAAGACCATCACCCTCGAGGTGGAAAGTTCT 22347
Query 28614 GAGACGGTGGCCGATCTCAAGCAAAAAATCGCCGACAAAGAGGGAGTGCCCGTAGATCAA 28673
|| ||| | | || ||||| || ||| ||||| || || | || ||| |||
Sbjct 22348 GATACGATTGATAATGTCAAGGCCAAGATCCAAGACAAGGAAGGGATCCCTCCAGACCAA 22407
Query 28674 CAGAGACTTATCTTTGCGGGCAAACAATTGGAAGATTCTAAAACTATGGCCGATTATAAC 28733
||||| ||||||||||| || ||||| | |||||| |||| | || ||||| |||
Sbjct 22408 CAGAGGCTTATCTTTGCAGGTAAACAGCTTGAAGATGGCCGAACTCTTGCGGATTACAAC 22467
Query 28734 ATTCAAAAAGAATCTACTCTGCAC 28757
|| || ||||| ||||| || |||
Sbjct 22468 ATCCAGAAAGAGTCTACCCTCCAC 22491
Score = 89.7 bits (98), Expect = 4e-13
Identities = 142/204 (70%), Gaps = 0/204 (0%)
Strand=Plus/Plus
Query 28554 ATGCAAATATTTGTAAAAACATTAACGGGTAAAACCATTACCGCCGAAACGGAACCTTCA 28613
||||| ||||| || ||||| | || || || ||||| ||| ||| |||| |||
Sbjct 29156 ATGCAGATATTCGTGAAAACTCTTACTGGCAAGACCATCACCCTCGAGGTGGAAAGTTCT 29215
Query 28614 GAGACGGTGGCCGATCTCAAGCAAAAAATCGCCGACAAAGAGGGAGTGCCCGTAGATCAA 28673
|| || | | || ||||| || ||| ||||| || || | || ||| |||
Sbjct 29216 GATACAATTGATAATGTCAAGGCCAAGATCCAAGACAAGGAAGGGATCCCACCAGACCAA 29275
Query 28674 CAGAGACTTATCTTTGCGGGCAAACAATTGGAAGATTCTAAAACTATGGCCGATTATAAC 28733
||||| ||||||||||| || ||||| | |||||| |||| | || ||||| |||
Sbjct 29276 CAGAGGCTTATCTTTGCCGGTAAACAGCTTGAAGATGGCCGAACTCTTGCGGATTACAAC 29335
Query 28734 ATTCAAAAAGAATCTACTCTGCAC 28757
|| || ||||| ||||| || |||
Sbjct 29336 ATCCAGAAAGAGTCTACCCTCCAC 29359
>seq481
Length=542854
Score = 93.3 bits (102), Expect = 4e-14
Identities = 146/209 (70%), Gaps = 0/209 (0%)
Strand=Plus/Plus
Query 28554 ATGCAAATATTTGTAAAAACATTAACGGGTAAAACCATTACCGCCGAAACGGAACCTTCA 28613
|||||||||||||| || || | || || || |||||||| || || ||||
Sbjct 210596 ATGCAAATATTTGTTAAGACTCTTACCGGAAAGACCATTACTTTGGAGGTTGAGAGTTCA 210655
Query 28614 GAGACGGTGGCCGATCTCAAGCAAAAAATCGCCGACAAAGAGGGAGTGCCCGTAGATCAA 28673
|| || | | | || ||||| || ||| ||||||||||| | ||| ||| |||
Sbjct 210656 GATACCATTGACAATGTCAAGGCTAAGATCCAGGACAAAGAGGGTATTCCCCCAGACCAA 210715
Query 28674 CAGAGACTTATCTTTGCGGGCAAACAATTGGAAGATTCTAAAACTATGGCCGATTATAAC 28733
||||| | |||||||| || || ||| | |||||| ||| | || ||||| |||
Sbjct 210716 CAGAGGTTGATCTTTGCCGGTAAGCAACTTGAAGATGGCCGCACTCTCGCTGATTACAAC 210775
Query 28734 ATTCAAAAAGAATCTACTCTGCACATGGT 28762
|| ||||| ||||| || || ||| ||||
Sbjct 210776 ATCCAAAAGGAATCCACCCTCCACTTGGT 210804
Score = 84.2 bits (92), Expect = 2e-11
Identities = 141/204 (69%), Gaps = 0/204 (0%)
Strand=Plus/Plus
Query 28554 ATGCAAATATTTGTAAAAACATTAACGGGTAAAACCATTACCGCCGAAACGGAACCTTCA 28613
|||||||||||||| ||||| | || || || || || ||| ||| |||| ||
Sbjct 257934 ATGCAAATATTTGTCAAAACCCTTACTGGCAAGACAATCACCCTTGAAGTGGAAAGCTCC 257993
Query 28614 GAGACGGTGGCCGATCTCAAGCAAAAAATCGCCGACAAAGAGGGAGTGCCCGTAGATCAA 28673
|| || | | || ||||| || ||| |||||||| || | || || |||
Sbjct 257994 GACACAATTGATAATGTCAAGGCCAAGATCCAAGACAAAGAAGGTATCCCTCCTGACCAA 258053
Query 28674 CAGAGACTTATCTTTGCGGGCAAACAATTGGAAGATTCTAAAACTATGGCCGATTATAAC 28733
||||| ||||||||||| || ||||||||||| ||| || | || || || |||
Sbjct 258054 CAGAGGCTTATCTTTGCTGGAAAACAATTGGAGGATGGCCGCACCCTTGCTGACTACAAC 258113
Query 28734 ATTCAAAAAGAATCTACTCTGCAC 28757
|| || ||||| ||||| || |||
Sbjct 258114 ATCCAGAAAGAGTCTACCCTCCAC 258137
>seq6889
Length=136205
Score = 89.7 bits (98), Expect = 4e-13
Identities = 142/204 (70%), Gaps = 0/204 (0%)
Strand=Plus/Plus
Query 28554 ATGCAAATATTTGTAAAAACATTAACGGGTAAAACCATTACCGCCGAAACGGAACCTTCA 28613
||||| || || || || ||||| || || ||||| || || || |||| |||
Sbjct 106425 ATGCAGATTTTCGTTAAGACATTGACTGGGAAAACAATCACATTGGAGGTGGAAAGTTCG 106484
Query 28614 GAGACGGTGGCCGATCTCAAGCAAAAAATCGCCGACAAAGAGGGAGTGCCCGTAGATCAA 28673
|| || | | | || | ||| ||| || ||||| || || | ||| ||||||
Sbjct 106485 GATACAATTGACAATGTGAAGGCAAAGATTCAGGACAAGGAAGGTATCCCCCCAGATCAG 106544
Query 28674 CAGAGACTTATCTTTGCGGGCAAACAATTGGAAGATTCTAAAACTATGGCCGATTATAAC 28733
|| || || |||||||| ||||| |||||||| ||| | ||| | || |||||||||
Sbjct 106545 CAAAGGCTCATCTTTGCTGGCAAGCAATTGGAGGATGGGAGGACTTTAGCTGATTATAAC 106604
Query 28734 ATTCAAAAAGAATCTACTCTGCAC 28757
||||| ||||| || || || |||
Sbjct 106605 ATTCAGAAAGAGTCCACCCTTCAC 106628
>seq25104
Length=148940
Score = 84.2 bits (92), Expect = 2e-11
Identities = 144/209 (69%), Gaps = 0/209 (0%)
Strand=Plus/Plus
Query 28554 ATGCAAATATTTGTAAAAACATTAACGGGTAAAACCATTACCGCCGAAACGGAACCTTCA 28613
|||||||| ||||| ||||| | || || || ||||| ||| ||| ||| ||||
Sbjct 35392 ATGCAAATCTTTGTTAAAACCCTCACTGGCAAGACCATCACCCTCGAGGTGGAGAGTTCA 35451
Query 28614 GAGACGGTGGCCGATCTCAAGCAAAAAATCGCCGACAAAGAGGGAGTGCCCGTAGATCAA 28673
|| || | | || | ||| || ||| || || || || | || |||||
Sbjct 35452 GACACCATTGATAATGTGAAGGCTAAGATCCAAGATAAGGAAGGGATCCCACCGGATCAG 35511
Query 28674 CAGAGACTTATCTTTGCGGGCAAACAATTGGAAGATTCTAAAACTATGGCCGATTATAAC 28733
||||| ||||||||||| ||||||||| | || ||| || | ||||| || |||
Sbjct 35512 CAGAGGCTTATCTTTGCTGGCAAACAACTTGAGGATGGCCGCACGCTAGCCGACTACAAC 35571
Query 28734 ATTCAAAAAGAATCTACTCTGCACATGGT 28762
||||| |||||||| || || ||| ||||
Sbjct 35572 ATTCAGAAAGAATCCACCCTTCACTTGGT 35600
>seq14353
Length=57137
Score = 84.2 bits (92), Expect = 2e-11
Identities = 144/209 (69%), Gaps = 0/209 (0%)
Strand=Plus/Plus
Query 28554 ATGCAAATATTTGTAAAAACATTAACGGGTAAAACCATTACCGCCGAAACGGAACCTTCA 28613
|||||||||||||| || || | || || || |||||||| || || ||||
Sbjct 32381 ATGCAAATATTTGTGAAGACTCTTACCGGAAAGACCATTACTTTGGAGGTTGAGAGTTCA 32440
Query 28614 GAGACGGTGGCCGATCTCAAGCAAAAAATCGCCGACAAAGAGGGAGTGCCCGTAGATCAA 28673
|| || | | | | ||||| || ||| ||||| ||||| | ||| ||| |||
Sbjct 32441 GATACCATTGACAAAGTCAAGGCTAAGATCCAGGACAAGGAGGGTATTCCCCCAGACCAA 32500
Query 28674 CAGAGACTTATCTTTGCGGGCAAACAATTGGAAGATTCTAAAACTATGGCCGATTATAAC 28733
||||| | |||||||| || || ||| | |||||| ||| | || ||||| |||
Sbjct 32501 CAGAGGTTGATCTTTGCCGGTAAGCAACTTGAAGATGGCCGCACTCTCGCTGATTACAAC 32560
Query 28734 ATTCAAAAAGAATCTACTCTGCACATGGT 28762
|| ||||| ||||| || || ||| ||||
Sbjct 32561 ATCCAAAAGGAATCCACCCTCCACTTGGT 32589
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 425250552340629
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