Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Gossypium_20barbadense_20[genbank_20GCA_5F001856525.1_202016-11-03]
29,751 sequences; 2,566,742,836 total letters
Query= NC_020852.1
Length=186468
Score E
Sequences producing significant alignments: (Bits) Value
seq19704 98.7 1e-15
seq25332 96.9 4e-15
seq24296 95.1 1e-14
seq7139 95.1 1e-14
seq13744 91.5 2e-13
seq27182 89.7 6e-13
seq12755 89.7 6e-13
seq8664 89.7 6e-13
>seq19704
Length=164701
Score = 98.7 bits (108), Expect = 1e-15
Identities = 160/228 (70%), Gaps = 2/228 (1%)
Strand=Plus/Plus
Query 75128 CGGGACTATGATTTTGGTTACTTTGGTCTCAAAACCCTTGAGAAGAGCTATCT-TCAACG 75186
||||||| ||| | || ||| |||||| ||||||||||||||| | ||| || | ||
Sbjct 135267 CGGGACTTTGACTATGATTATTTTGGTTTCAAAACCCTTGAGAGGTCCTACCTCTTAAAA 135326
Query 75187 GCTCGATGGCATCCTCATGGAAACCCCACAGTACATGTTCATGCGGGTCGCAATCGGCAT 75246
| || | || | | || |||| || || ||||||| ||| |||| ||| | || ||
Sbjct 135327 GTTCAAGGGAAGGTT-ATAGAAAGGCCCCAACACATGTTAATGAGGGTTGCAGTTGGAAT 135385
Query 75247 CCACGGGGAAGACATTGATTCTGTCTTGGAGACATACGACAAGATGTCCCAAGGTATGTT 75306
|| | | ||||||||||||| | | || || ||| |||||| ||| | |||
Sbjct 135386 TCATAAGAATGACATTGATTCTGCTATAAAAACTTATCACATGATGTCTCAAAGATGGTT 135445
Query 75307 CATTCACGCAACACCAACCCTCTTCAATGCTGGTACACCAAGACCGCA 75354
| ||| || | || || || ||||||||||| || ||||| || ||
Sbjct 135446 TACTCATGCTTCTCCCACACTTTTCAATGCTGGAACTCCAAGGCCTCA 135493
>seq25332
Length=434290
Score = 96.9 bits (106), Expect = 4e-15
Identities = 161/229 (70%), Gaps = 4/229 (2%)
Strand=Plus/Minus
Query 75128 CGGGACTATGATTTTGGTTACTTTGGTCTCAAAACCCTTGAGAAGAGCTA--TCTTCAAC 75185
||||||| ||| | || ||| |||||| ||||||||||||||| | ||| |||| ||
Sbjct 185956 CGGGACTTTGACTATGATTATTTTGGTTTCAAAACCCTTGAGAGGTCCTACCTCTTGAAA 185897
Query 75186 GGCTCGATGGCATCCTCATGGAAACCCCACAGTACATGTTCATGCGGGTCGCAATCGGCA 75245
| || | || | | || |||| || || ||||||| ||| |||| ||| | || |
Sbjct 185896 GT-TCAAGGGAAGGTT-ATAGAAAGGCCCCAACACATGTTAATGAGGGTTGCAGTTGGAA 185839
Query 75246 TCCACGGGGAAGACATTGATTCTGTCTTGGAGACATACGACAAGATGTCCCAAGGTATGT 75305
| || | | ||||||||||||| | | || || ||| |||||| ||| | ||
Sbjct 185838 TTCATAAGAATGACATTGATTCTGCTATAAAAACTTATCACATGATGTCTCAAAGATGGT 185779
Query 75306 TCATTCACGCAACACCAACCCTCTTCAATGCTGGTACACCAAGACCGCA 75354
| | ||| || | || || || ||||||||||| || ||||| || ||
Sbjct 185778 TTACTCATGCTTCTCCCACACTTTTCAATGCTGGAACTCCAAGGCCTCA 185730
>seq24296
Length=628690
Score = 95.1 bits (104), Expect = 1e-14
Identities = 245/370 (66%), Gaps = 10/370 (3%)
Strand=Plus/Plus
Query 175315 CCAGGTACGGGAAAGACCCTCCTCGCCCGAGCCATCGCGGGTGAATCAAATGTCCCATTC 175374
|| ||||| |||||||| || | || |||| | ||||| ||| | || || ||
Sbjct 202369 CCTGGTACTGGAAAGACTCTATTGGCGAGAGCAGTAGCGGGAGAAGCCGGGGTTCCGTTT 202428
Query 175375 ATCCAGTGCTCTGCCGCAAACTTTGTGGAGATGTTTGTTGGTGTGGGTGCCAAAAGGGTT 175434
|| ||| |||| | | ||||||||| |||| ||||| || ||||| || ||
Sbjct 202429 TTCTCATGCGCTGCTTCTGAGTTTGTGGAGTTGTTCGTTGGAGTAGGTGCATCCAGAGTA 202488
Query 175435 CGCGATCTCTTTGAAATCGCCCGCGAAAATCAA----CCATGTATTGTCTTCATTGATGA 175490
| || | || || | ||| ||| ||| || || || ||||||||||||||
Sbjct 202489 AGGGACTTATTCGATAAGGCC----AAATCCAAGGCTCCTTGCATCGTCTTCATTGATGA 202544
Query 175491 GATTGATGCGGTGGGCAAGCAACGCAGCGCTGGTGGTATGCCAGCAAATGACGAGAGAGA 175550
||||||||| || || | || | | |||||| | || |||||| ||||||||
Sbjct 202545 GATTGATGCTGTTGGGAGACAGAGAGGAGCTGGTCTTGGAGGAGGAAATGATGAGAGAGA 202604
Query 175551 ACAAACAATTAATCAACTACTCACCGAGATGGATGGCTTTGACAATG-AGACTGGCATTG 175609
|| ||||| ||||| | | || ||||||||||| ||| || | | |||| |
Sbjct 202605 GCAGACAATCAATCAGTTGTTGACTGAGATGGATGGATTT-TCAGGGAATTCTGGTGTCA 202663
Query 175610 TGGTTATTGCGGCCACTAATCGCGTGGATATCCTTGATGACGCCCTCCTTCGCCCGGGTC 175669
| ||| | || || || || | |||| | ||||||| ||| | | || ||||||
Sbjct 202664 TTGTTTTGGCAGCAACCAACAGACCGGATGTTCTTGATGCCGCTTTGTTGCGACCGGGTA 202723
Query 175670 GTTTTGATCG 175679
| ||||| ||
Sbjct 202724 GGTTTGACCG 202733
>seq7139
Length=440615
Score = 95.1 bits (104), Expect = 1e-14
Identities = 302/461 (66%), Gaps = 8/461 (2%)
Strand=Plus/Minus
Query 175191 TGATGTTGAGGGGATTGACGCCGCCAAAGATGAACTTGAAG-AGATTGTGGATTTTCTCA 175249
|||||||| || |||| | || |||| | |||| | | || ||||||| || | |
Sbjct 161266 TGATGTTGCTGGAGTTGATGAAGC-AAAGCAGGACTTCATGGAGGTTGTGGAGTTCTTAA 161208
Query 175250 AGCAACCCGAGAGATATTTTGGAAGTGGTGCCAAG-ATCCCCCGAGGCGCCCTTCTCGCG 175308
|| | || || |||| || | ||| | | | | ||||| ||| | ||||||
Sbjct 161207 AGAAGCCAGAAAGAT-TTACCGCAGTCGGGGCTCGTATCCCTAAAGGTGTTCTTCTCATT 161149
Query 175309 GGTAAGCCAGGTACGGGAAAGACCCTCCTCGCCCGAGCCATCGCGGGTGAATCAAATGTC 175368
|| || || || |||||||| || || || || || || |||||| | |||
Sbjct 161148 GGCCCTCCTGGAACCGGAAAGACTCTTCTTGCTAAGGCAATTGCCGGTGAAGCTGGTGTG 161089
Query 175369 CCATTCATC--CAGTGCTCTGCCGCAAACTTTGTGGAGATGTTTGTTGGTGTGGGTGCCA 175426
|||||| || || | || | | | ||||| || |||||||||||||| |||||
Sbjct 161088 CCATTCTTCTCCATT--TCCGGTTCTGAGTTTGTTGAAATGTTTGTTGGTGTTGGTGCTT 161031
Query 175427 AAAGGGTTCGCGATCTCTTTGAAATCGCCCGCGAAAATCAACCATGTATTGTCTTCATTG 175486
| ||||| ||||| || | | ||| || ||| || ||||| ||||| | |
Sbjct 161030 CTCGAGTTCGTGATCTTTTCAAGAAGGCCAAGGAGAATGCCCCCTGTATCGTCTTTGTGG 160971
Query 175487 ATGAGATTGATGCGGTGGGCAAGCAACGCAGCGCTGGTGGTATGCCAGCAAATGACGAGA 175546
|||| |||||||| || || ||| | | ||||| | || ||||| ||||
Sbjct 160970 ATGAAATTGATGCCGTTGGACGACAAAGAGGAACTGGTATTGGTGGAGGGAATGATGAGA 160911
Query 175547 GAGAACAAACAATTAATCAACTACTCACCGAGATGGATGGCTTTGACAATGAGACTGGCA 175606
|||| ||||| |||| || || | ||||| |||||||| || || | | || || |
Sbjct 160910 GAGAGCAAACTCTTAACCAGCTTTTGACCGAAATGGATGGTTTCGAGGGTAACACCGGTA 160851
Query 175607 TTGTGGTTATTGCGGCCACTAATCGCGTGGATATCCTTGAT 175647
| | || ||||| || ||||| | | || || ||||||
Sbjct 160850 TCATCGTAATTGCAGCAACTAACAGAGCTGACATTCTTGAT 160810
>seq13744
Length=547370
Score = 91.5 bits (100), Expect = 2e-13
Identities = 244/370 (66%), Gaps = 10/370 (3%)
Strand=Plus/Plus
Query 175315 CCAGGTACGGGAAAGACCCTCCTCGCCCGAGCCATCGCGGGTGAATCAAATGTCCCATTC 175374
|| ||||| |||||||| || | || |||| | || || ||| | || || ||
Sbjct 412647 CCTGGTACTGGAAAGACTCTATTGGCGAGAGCAGTAGCAGGAGAAGCCGGGGTTCCGTTT 412706
Query 175375 ATCCAGTGCTCTGCCGCAAACTTTGTGGAGATGTTTGTTGGTGTGGGTGCCAAAAGGGTT 175434
|| ||| |||| | | ||||||||| |||| ||||| || ||||| || ||
Sbjct 412707 TTCTCATGCGCTGCTTCTGAGTTTGTGGAGTTGTTCGTTGGAGTAGGTGCATCCAGAGTA 412766
Query 175435 CGCGATCTCTTTGAAATCGCCCGCGAAAATCAA----CCATGTATTGTCTTCATTGATGA 175490
| || | || || | ||| ||| ||| || || || ||||||||||||||
Sbjct 412767 AGGGACTTATTCGATAAGGCC----AAATCCAAGGCTCCTTGCATCGTCTTCATTGATGA 412822
Query 175491 GATTGATGCGGTGGGCAAGCAACGCAGCGCTGGTGGTATGCCAGCAAATGACGAGAGAGA 175550
||||||||| || || | || | | |||||| | || |||||| ||||||||
Sbjct 412823 GATTGATGCTGTTGGGAGACAGAGAGGAGCTGGTCTTGGAGGAGGAAATGATGAGAGAGA 412882
Query 175551 ACAAACAATTAATCAACTACTCACCGAGATGGATGGCTTTGACAATG-AGACTGGCATTG 175609
|| ||||| ||||| | | || ||||||||||| ||| || | | |||| |
Sbjct 412883 GCAGACAATCAATCAGTTGTTGACTGAGATGGATGGATTT-TCAGGGAATTCTGGTGTCA 412941
Query 175610 TGGTTATTGCGGCCACTAATCGCGTGGATATCCTTGATGACGCCCTCCTTCGCCCGGGTC 175669
| ||| | || || || || | |||| | ||||||| ||| | | || ||||||
Sbjct 412942 TTGTTTTGGCAGCAACCAACAGACCGGATGTTCTTGATGCCGCTTTGTTGCGACCGGGTA 413001
Query 175670 GTTTTGATCG 175679
| ||||| ||
Sbjct 413002 GGTTTGACCG 413011
Score = 91.5 bits (100), Expect = 2e-13
Identities = 244/370 (66%), Gaps = 10/370 (3%)
Strand=Plus/Plus
Query 175315 CCAGGTACGGGAAAGACCCTCCTCGCCCGAGCCATCGCGGGTGAATCAAATGTCCCATTC 175374
|| ||||| |||||||| || | || |||| | || || ||| | || || ||
Sbjct 416748 CCTGGTACTGGAAAGACTCTATTGGCGAGAGCAGTAGCAGGAGAAGCCGGGGTTCCGTTT 416807
Query 175375 ATCCAGTGCTCTGCCGCAAACTTTGTGGAGATGTTTGTTGGTGTGGGTGCCAAAAGGGTT 175434
|| ||| |||| | | ||||||||| |||| ||||| || ||||| || ||
Sbjct 416808 TTCTCATGCGCTGCTTCTGAGTTTGTGGAGTTGTTCGTTGGAGTAGGTGCATCCAGAGTA 416867
Query 175435 CGCGATCTCTTTGAAATCGCCCGCGAAAATCAA----CCATGTATTGTCTTCATTGATGA 175490
| || | || || | ||| ||| ||| || || || ||||||||||||||
Sbjct 416868 AGGGACTTATTCGATAAGGCC----AAATCCAAGGCTCCTTGCATCGTCTTCATTGATGA 416923
Query 175491 GATTGATGCGGTGGGCAAGCAACGCAGCGCTGGTGGTATGCCAGCAAATGACGAGAGAGA 175550
||||||||| || || | || | | |||||| | || |||||| ||||||||
Sbjct 416924 GATTGATGCTGTTGGGAGACAGAGAGGAGCTGGTCTTGGAGGAGGAAATGATGAGAGAGA 416983
Query 175551 ACAAACAATTAATCAACTACTCACCGAGATGGATGGCTTTGACAATG-AGACTGGCATTG 175609
|| ||||| ||||| | | || ||||||||||| ||| || | | |||| |
Sbjct 416984 GCAGACAATCAATCAGTTGTTGACTGAGATGGATGGATTT-TCAGGGAATTCTGGTGTCA 417042
Query 175610 TGGTTATTGCGGCCACTAATCGCGTGGATATCCTTGATGACGCCCTCCTTCGCCCGGGTC 175669
| ||| | || || || || | |||| | ||||||| ||| | | || ||||||
Sbjct 417043 TTGTTTTGGCAGCAACCAACAGACCGGATGTTCTTGATGCCGCTTTGTTGCGACCGGGTA 417102
Query 175670 GTTTTGATCG 175679
| ||||| ||
Sbjct 417103 GGTTTGACCG 417112
>seq27182
Length=171535
Score = 89.7 bits (98), Expect = 6e-13
Identities = 171/252 (68%), Gaps = 0/252 (0%)
Strand=Plus/Minus
Query 175396 TTTGTGGAGATGTTTGTTGGTGTGGGTGCCAAAAGGGTTCGCGATCTCTTTGAAATCGCC 175455
||||| || |||||||||||||| ||||| | ||||| ||||| || | | |||
Sbjct 139059 TTTGTTGAAATGTTTGTTGGTGTTGGTGCTTCTCGAGTTCGTGATCTTTTCAAGAAGGCC 139000
Query 175456 CGCGAAAATCAACCATGTATTGTCTTCATTGATGAGATTGATGCGGTGGGCAAGCAACGC 175515
|| ||| || ||||| ||||| | ||||| |||||||| || || ||| |
Sbjct 138999 AAGGAGAATGCCCCCTGTATCGTCTTTGTGGATGAAATTGATGCCGTTGGACGACAAAGA 138940
Query 175516 AGCGCTGGTGGTATGCCAGCAAATGACGAGAGAGAACAAACAATTAATCAACTACTCACC 175575
| ||||| | || ||||| |||||||| ||||| |||| || || | |||
Sbjct 138939 GGAACTGGTATTGGTGGAGGGAATGATGAGAGAGAGCAAACTCTTAACCAGCTTTTGACC 138880
Query 175576 GAGATGGATGGCTTTGACAATGAGACTGGCATTGTGGTTATTGCGGCCACTAATCGCGTG 175635
|| |||||||| || || | | || || || | || ||||| || ||||| | |
Sbjct 138879 GAAATGGATGGTTTCGAGGGTAACACCGGTATCATCGTAATTGCAGCAACTAACAGAGCT 138820
Query 175636 GATATCCTTGAT 175647
|| || ||||||
Sbjct 138819 GACATTCTTGAT 138808
>seq12755
Length=243795
Score = 89.7 bits (98), Expect = 6e-13
Identities = 158/228 (69%), Gaps = 2/228 (1%)
Strand=Plus/Plus
Query 75128 CGGGACTATGATTTTGGTTACTTTGGTCTCAAAACCCTTGAGAAGAGCTATCT-TCAACG 75186
|| |||| ||| | || ||||||||| |||||||||| |||| | ||||| | |
Sbjct 39687 CGTGACTTTGACTATGATTACTTTGGCTTCAAAACCCTGGAGAGGTCTTATCTCTTGAAA 39746
Query 75187 GCTCGATGGCATCCTCATGGAAACCCCACAGTACATGTTCATGCGGGTCGCAATCGGCAT 75246
| || | || | | || |||| || ||| | ||||| ||| |||| || | || ||
Sbjct 39747 GTTCAAGGGAAGGTT-ATAGAAAGGCCTCAGCATATGTTAATGAGGGTTGCTGTTGGAAT 39805
Query 75247 CCACGGGGAAGACATTGATTCTGTCTTGGAGACATACGACAAGATGTCCCAAGGTATGTT 75306
|| ||| ||||||||||||| | | || || ||| |||||| ||| | |||
Sbjct 39806 TCATAAGGATGACATTGATTCTGCTATAAAAACTTATCACATGATGTCTCAAAGATGGTT 39865
Query 75307 CATTCACGCAACACCAACCCTCTTCAATGCTGGTACACCAAGACCGCA 75354
|| ||| || | || || || ||||||||||| || ||||| || ||
Sbjct 39866 CACTCATGCTTCTCCCACTCTTTTCAATGCTGGCACTCCAAGGCCTCA 39913
>seq8664
Length=49552
Score = 89.7 bits (98), Expect = 6e-13
Identities = 158/228 (69%), Gaps = 2/228 (1%)
Strand=Plus/Plus
Query 75128 CGGGACTATGATTTTGGTTACTTTGGTCTCAAAACCCTTGAGAAGAGCTATCT-TCAACG 75186
|| |||| ||| | || ||||||||| |||||||||| |||| | ||||| | |
Sbjct 44683 CGTGACTTTGACTATGATTACTTTGGCTTCAAAACCCTGGAGAGGTCTTATCTCTTGAAA 44742
Query 75187 GCTCGATGGCATCCTCATGGAAACCCCACAGTACATGTTCATGCGGGTCGCAATCGGCAT 75246
| || | || | | || |||| || ||| | ||||| ||| |||| || | || ||
Sbjct 44743 GTTCAAGGGAAGGTT-ATAGAAAGGCCTCAGCATATGTTAATGAGGGTTGCTGTTGGAAT 44801
Query 75247 CCACGGGGAAGACATTGATTCTGTCTTGGAGACATACGACAAGATGTCCCAAGGTATGTT 75306
|| ||| ||||||||||||| | | || || ||| |||||| ||| | |||
Sbjct 44802 TCATAAGGATGACATTGATTCTGCTATAAAAACTTATCACATGATGTCTCAAAGATGGTT 44861
Query 75307 CATTCACGCAACACCAACCCTCTTCAATGCTGGTACACCAAGACCGCA 75354
|| ||| || | || || || ||||||||||| || ||||| || ||
Sbjct 44862 CACTCATGCTTCTCCCACTCTTTTCAATGCTGGGACTCCAAGGCCTCA 44909
Score = 89.7 bits (98), Expect = 6e-13
Identities = 158/228 (69%), Gaps = 2/228 (1%)
Strand=Plus/Plus
Query 75128 CGGGACTATGATTTTGGTTACTTTGGTCTCAAAACCCTTGAGAAGAGCTATCT-TCAACG 75186
|| |||| ||| | | ||||||||| |||||||||| |||| | ||||| | |
Sbjct 49108 CGTGACTTTGACTACGATTACTTTGGCTTCAAAACCCTGGAGAGGTCTTATCTCTTGAAA 49167
Query 75187 GCTCGATGGCATCCTCATGGAAACCCCACAGTACATGTTCATGCGGGTCGCAATCGGCAT 75246
| || | || | | || |||| || ||| ||||||| ||| |||| || | || ||
Sbjct 49168 GTTCAAGGGAAGGTT-ATAGAAAGGCCTCAGCACATGTTAATGAGGGTTGCTGTTGGAAT 49226
Query 75247 CCACGGGGAAGACATTGATTCTGTCTTGGAGACATACGACAAGATGTCCCAAGGTATGTT 75306
|| ||| ||||||||||||| | | || || ||| |||||| ||| | |||
Sbjct 49227 TCATAAGGATGACATTGATTCTGCTATAAAAACTTATCACATGATGTCTCAAAGATGGTT 49286
Query 75307 CATTCACGCAACACCAACCCTCTTCAATGCTGGTACACCAAGACCGCA 75354
|| ||| || | || || || ||||||||||| || ||||| || ||
Sbjct 49287 CACTCATGCTTCTCCCACTCTTTTCAATGCTGGGACTCCAAGGCCTCA 49334
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 596347743222880
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