Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Gossypium_20barbadense_20[genbank_20GCA_5F001856525.1_202016-11-03] 29,751 sequences; 2,566,742,836 total letters Query= NC_020852.1 Length=186468 Score E Sequences producing significant alignments: (Bits) Value seq19704 98.7 1e-15 seq25332 96.9 4e-15 seq24296 95.1 1e-14 seq7139 95.1 1e-14 seq13744 91.5 2e-13 seq27182 89.7 6e-13 seq12755 89.7 6e-13 seq8664 89.7 6e-13 >seq19704 Length=164701 Score = 98.7 bits (108), Expect = 1e-15 Identities = 160/228 (70%), Gaps = 2/228 (1%) Strand=Plus/Plus Query 75128 CGGGACTATGATTTTGGTTACTTTGGTCTCAAAACCCTTGAGAAGAGCTATCT-TCAACG 75186 ||||||| ||| | || ||| |||||| ||||||||||||||| | ||| || | || Sbjct 135267 CGGGACTTTGACTATGATTATTTTGGTTTCAAAACCCTTGAGAGGTCCTACCTCTTAAAA 135326 Query 75187 GCTCGATGGCATCCTCATGGAAACCCCACAGTACATGTTCATGCGGGTCGCAATCGGCAT 75246 | || | || | | || |||| || || ||||||| ||| |||| ||| | || || Sbjct 135327 GTTCAAGGGAAGGTT-ATAGAAAGGCCCCAACACATGTTAATGAGGGTTGCAGTTGGAAT 135385 Query 75247 CCACGGGGAAGACATTGATTCTGTCTTGGAGACATACGACAAGATGTCCCAAGGTATGTT 75306 || | | ||||||||||||| | | || || ||| |||||| ||| | ||| Sbjct 135386 TCATAAGAATGACATTGATTCTGCTATAAAAACTTATCACATGATGTCTCAAAGATGGTT 135445 Query 75307 CATTCACGCAACACCAACCCTCTTCAATGCTGGTACACCAAGACCGCA 75354 | ||| || | || || || ||||||||||| || ||||| || || Sbjct 135446 TACTCATGCTTCTCCCACACTTTTCAATGCTGGAACTCCAAGGCCTCA 135493 >seq25332 Length=434290 Score = 96.9 bits (106), Expect = 4e-15 Identities = 161/229 (70%), Gaps = 4/229 (2%) Strand=Plus/Minus Query 75128 CGGGACTATGATTTTGGTTACTTTGGTCTCAAAACCCTTGAGAAGAGCTA--TCTTCAAC 75185 ||||||| ||| | || ||| |||||| ||||||||||||||| | ||| |||| || Sbjct 185956 CGGGACTTTGACTATGATTATTTTGGTTTCAAAACCCTTGAGAGGTCCTACCTCTTGAAA 185897 Query 75186 GGCTCGATGGCATCCTCATGGAAACCCCACAGTACATGTTCATGCGGGTCGCAATCGGCA 75245 | || | || | | || |||| || || ||||||| ||| |||| ||| | || | Sbjct 185896 GT-TCAAGGGAAGGTT-ATAGAAAGGCCCCAACACATGTTAATGAGGGTTGCAGTTGGAA 185839 Query 75246 TCCACGGGGAAGACATTGATTCTGTCTTGGAGACATACGACAAGATGTCCCAAGGTATGT 75305 | || | | ||||||||||||| | | || || ||| |||||| ||| | || Sbjct 185838 TTCATAAGAATGACATTGATTCTGCTATAAAAACTTATCACATGATGTCTCAAAGATGGT 185779 Query 75306 TCATTCACGCAACACCAACCCTCTTCAATGCTGGTACACCAAGACCGCA 75354 | | ||| || | || || || ||||||||||| || ||||| || || Sbjct 185778 TTACTCATGCTTCTCCCACACTTTTCAATGCTGGAACTCCAAGGCCTCA 185730 >seq24296 Length=628690 Score = 95.1 bits (104), Expect = 1e-14 Identities = 245/370 (66%), Gaps = 10/370 (3%) Strand=Plus/Plus Query 175315 CCAGGTACGGGAAAGACCCTCCTCGCCCGAGCCATCGCGGGTGAATCAAATGTCCCATTC 175374 || ||||| |||||||| || | || |||| | ||||| ||| | || || || Sbjct 202369 CCTGGTACTGGAAAGACTCTATTGGCGAGAGCAGTAGCGGGAGAAGCCGGGGTTCCGTTT 202428 Query 175375 ATCCAGTGCTCTGCCGCAAACTTTGTGGAGATGTTTGTTGGTGTGGGTGCCAAAAGGGTT 175434 || ||| |||| | | ||||||||| |||| ||||| || ||||| || || Sbjct 202429 TTCTCATGCGCTGCTTCTGAGTTTGTGGAGTTGTTCGTTGGAGTAGGTGCATCCAGAGTA 202488 Query 175435 CGCGATCTCTTTGAAATCGCCCGCGAAAATCAA----CCATGTATTGTCTTCATTGATGA 175490 | || | || || | ||| ||| ||| || || || |||||||||||||| Sbjct 202489 AGGGACTTATTCGATAAGGCC----AAATCCAAGGCTCCTTGCATCGTCTTCATTGATGA 202544 Query 175491 GATTGATGCGGTGGGCAAGCAACGCAGCGCTGGTGGTATGCCAGCAAATGACGAGAGAGA 175550 ||||||||| || || | || | | |||||| | || |||||| |||||||| Sbjct 202545 GATTGATGCTGTTGGGAGACAGAGAGGAGCTGGTCTTGGAGGAGGAAATGATGAGAGAGA 202604 Query 175551 ACAAACAATTAATCAACTACTCACCGAGATGGATGGCTTTGACAATG-AGACTGGCATTG 175609 || ||||| ||||| | | || ||||||||||| ||| || | | |||| | Sbjct 202605 GCAGACAATCAATCAGTTGTTGACTGAGATGGATGGATTT-TCAGGGAATTCTGGTGTCA 202663 Query 175610 TGGTTATTGCGGCCACTAATCGCGTGGATATCCTTGATGACGCCCTCCTTCGCCCGGGTC 175669 | ||| | || || || || | |||| | ||||||| ||| | | || |||||| Sbjct 202664 TTGTTTTGGCAGCAACCAACAGACCGGATGTTCTTGATGCCGCTTTGTTGCGACCGGGTA 202723 Query 175670 GTTTTGATCG 175679 | ||||| || Sbjct 202724 GGTTTGACCG 202733 >seq7139 Length=440615 Score = 95.1 bits (104), Expect = 1e-14 Identities = 302/461 (66%), Gaps = 8/461 (2%) Strand=Plus/Minus Query 175191 TGATGTTGAGGGGATTGACGCCGCCAAAGATGAACTTGAAG-AGATTGTGGATTTTCTCA 175249 |||||||| || |||| | || |||| | |||| | | || ||||||| || | | Sbjct 161266 TGATGTTGCTGGAGTTGATGAAGC-AAAGCAGGACTTCATGGAGGTTGTGGAGTTCTTAA 161208 Query 175250 AGCAACCCGAGAGATATTTTGGAAGTGGTGCCAAG-ATCCCCCGAGGCGCCCTTCTCGCG 175308 || | || || |||| || | ||| | | | | ||||| ||| | |||||| Sbjct 161207 AGAAGCCAGAAAGAT-TTACCGCAGTCGGGGCTCGTATCCCTAAAGGTGTTCTTCTCATT 161149 Query 175309 GGTAAGCCAGGTACGGGAAAGACCCTCCTCGCCCGAGCCATCGCGGGTGAATCAAATGTC 175368 || || || || |||||||| || || || || || || |||||| | ||| Sbjct 161148 GGCCCTCCTGGAACCGGAAAGACTCTTCTTGCTAAGGCAATTGCCGGTGAAGCTGGTGTG 161089 Query 175369 CCATTCATC--CAGTGCTCTGCCGCAAACTTTGTGGAGATGTTTGTTGGTGTGGGTGCCA 175426 |||||| || || | || | | | ||||| || |||||||||||||| ||||| Sbjct 161088 CCATTCTTCTCCATT--TCCGGTTCTGAGTTTGTTGAAATGTTTGTTGGTGTTGGTGCTT 161031 Query 175427 AAAGGGTTCGCGATCTCTTTGAAATCGCCCGCGAAAATCAACCATGTATTGTCTTCATTG 175486 | ||||| ||||| || | | ||| || ||| || ||||| ||||| | | Sbjct 161030 CTCGAGTTCGTGATCTTTTCAAGAAGGCCAAGGAGAATGCCCCCTGTATCGTCTTTGTGG 160971 Query 175487 ATGAGATTGATGCGGTGGGCAAGCAACGCAGCGCTGGTGGTATGCCAGCAAATGACGAGA 175546 |||| |||||||| || || ||| | | ||||| | || ||||| |||| Sbjct 160970 ATGAAATTGATGCCGTTGGACGACAAAGAGGAACTGGTATTGGTGGAGGGAATGATGAGA 160911 Query 175547 GAGAACAAACAATTAATCAACTACTCACCGAGATGGATGGCTTTGACAATGAGACTGGCA 175606 |||| ||||| |||| || || | ||||| |||||||| || || | | || || | Sbjct 160910 GAGAGCAAACTCTTAACCAGCTTTTGACCGAAATGGATGGTTTCGAGGGTAACACCGGTA 160851 Query 175607 TTGTGGTTATTGCGGCCACTAATCGCGTGGATATCCTTGAT 175647 | | || ||||| || ||||| | | || || |||||| Sbjct 160850 TCATCGTAATTGCAGCAACTAACAGAGCTGACATTCTTGAT 160810 >seq13744 Length=547370 Score = 91.5 bits (100), Expect = 2e-13 Identities = 244/370 (66%), Gaps = 10/370 (3%) Strand=Plus/Plus Query 175315 CCAGGTACGGGAAAGACCCTCCTCGCCCGAGCCATCGCGGGTGAATCAAATGTCCCATTC 175374 || ||||| |||||||| || | || |||| | || || ||| | || || || Sbjct 412647 CCTGGTACTGGAAAGACTCTATTGGCGAGAGCAGTAGCAGGAGAAGCCGGGGTTCCGTTT 412706 Query 175375 ATCCAGTGCTCTGCCGCAAACTTTGTGGAGATGTTTGTTGGTGTGGGTGCCAAAAGGGTT 175434 || ||| |||| | | ||||||||| |||| ||||| || ||||| || || Sbjct 412707 TTCTCATGCGCTGCTTCTGAGTTTGTGGAGTTGTTCGTTGGAGTAGGTGCATCCAGAGTA 412766 Query 175435 CGCGATCTCTTTGAAATCGCCCGCGAAAATCAA----CCATGTATTGTCTTCATTGATGA 175490 | || | || || | ||| ||| ||| || || || |||||||||||||| Sbjct 412767 AGGGACTTATTCGATAAGGCC----AAATCCAAGGCTCCTTGCATCGTCTTCATTGATGA 412822 Query 175491 GATTGATGCGGTGGGCAAGCAACGCAGCGCTGGTGGTATGCCAGCAAATGACGAGAGAGA 175550 ||||||||| || || | || | | |||||| | || |||||| |||||||| Sbjct 412823 GATTGATGCTGTTGGGAGACAGAGAGGAGCTGGTCTTGGAGGAGGAAATGATGAGAGAGA 412882 Query 175551 ACAAACAATTAATCAACTACTCACCGAGATGGATGGCTTTGACAATG-AGACTGGCATTG 175609 || ||||| ||||| | | || ||||||||||| ||| || | | |||| | Sbjct 412883 GCAGACAATCAATCAGTTGTTGACTGAGATGGATGGATTT-TCAGGGAATTCTGGTGTCA 412941 Query 175610 TGGTTATTGCGGCCACTAATCGCGTGGATATCCTTGATGACGCCCTCCTTCGCCCGGGTC 175669 | ||| | || || || || | |||| | ||||||| ||| | | || |||||| Sbjct 412942 TTGTTTTGGCAGCAACCAACAGACCGGATGTTCTTGATGCCGCTTTGTTGCGACCGGGTA 413001 Query 175670 GTTTTGATCG 175679 | ||||| || Sbjct 413002 GGTTTGACCG 413011 Score = 91.5 bits (100), Expect = 2e-13 Identities = 244/370 (66%), Gaps = 10/370 (3%) Strand=Plus/Plus Query 175315 CCAGGTACGGGAAAGACCCTCCTCGCCCGAGCCATCGCGGGTGAATCAAATGTCCCATTC 175374 || ||||| |||||||| || | || |||| | || || ||| | || || || Sbjct 416748 CCTGGTACTGGAAAGACTCTATTGGCGAGAGCAGTAGCAGGAGAAGCCGGGGTTCCGTTT 416807 Query 175375 ATCCAGTGCTCTGCCGCAAACTTTGTGGAGATGTTTGTTGGTGTGGGTGCCAAAAGGGTT 175434 || ||| |||| | | ||||||||| |||| ||||| || ||||| || || Sbjct 416808 TTCTCATGCGCTGCTTCTGAGTTTGTGGAGTTGTTCGTTGGAGTAGGTGCATCCAGAGTA 416867 Query 175435 CGCGATCTCTTTGAAATCGCCCGCGAAAATCAA----CCATGTATTGTCTTCATTGATGA 175490 | || | || || | ||| ||| ||| || || || |||||||||||||| Sbjct 416868 AGGGACTTATTCGATAAGGCC----AAATCCAAGGCTCCTTGCATCGTCTTCATTGATGA 416923 Query 175491 GATTGATGCGGTGGGCAAGCAACGCAGCGCTGGTGGTATGCCAGCAAATGACGAGAGAGA 175550 ||||||||| || || | || | | |||||| | || |||||| |||||||| Sbjct 416924 GATTGATGCTGTTGGGAGACAGAGAGGAGCTGGTCTTGGAGGAGGAAATGATGAGAGAGA 416983 Query 175551 ACAAACAATTAATCAACTACTCACCGAGATGGATGGCTTTGACAATG-AGACTGGCATTG 175609 || ||||| ||||| | | || ||||||||||| ||| || | | |||| | Sbjct 416984 GCAGACAATCAATCAGTTGTTGACTGAGATGGATGGATTT-TCAGGGAATTCTGGTGTCA 417042 Query 175610 TGGTTATTGCGGCCACTAATCGCGTGGATATCCTTGATGACGCCCTCCTTCGCCCGGGTC 175669 | ||| | || || || || | |||| | ||||||| ||| | | || |||||| Sbjct 417043 TTGTTTTGGCAGCAACCAACAGACCGGATGTTCTTGATGCCGCTTTGTTGCGACCGGGTA 417102 Query 175670 GTTTTGATCG 175679 | ||||| || Sbjct 417103 GGTTTGACCG 417112 >seq27182 Length=171535 Score = 89.7 bits (98), Expect = 6e-13 Identities = 171/252 (68%), Gaps = 0/252 (0%) Strand=Plus/Minus Query 175396 TTTGTGGAGATGTTTGTTGGTGTGGGTGCCAAAAGGGTTCGCGATCTCTTTGAAATCGCC 175455 ||||| || |||||||||||||| ||||| | ||||| ||||| || | | ||| Sbjct 139059 TTTGTTGAAATGTTTGTTGGTGTTGGTGCTTCTCGAGTTCGTGATCTTTTCAAGAAGGCC 139000 Query 175456 CGCGAAAATCAACCATGTATTGTCTTCATTGATGAGATTGATGCGGTGGGCAAGCAACGC 175515 || ||| || ||||| ||||| | ||||| |||||||| || || ||| | Sbjct 138999 AAGGAGAATGCCCCCTGTATCGTCTTTGTGGATGAAATTGATGCCGTTGGACGACAAAGA 138940 Query 175516 AGCGCTGGTGGTATGCCAGCAAATGACGAGAGAGAACAAACAATTAATCAACTACTCACC 175575 | ||||| | || ||||| |||||||| ||||| |||| || || | ||| Sbjct 138939 GGAACTGGTATTGGTGGAGGGAATGATGAGAGAGAGCAAACTCTTAACCAGCTTTTGACC 138880 Query 175576 GAGATGGATGGCTTTGACAATGAGACTGGCATTGTGGTTATTGCGGCCACTAATCGCGTG 175635 || |||||||| || || | | || || || | || ||||| || ||||| | | Sbjct 138879 GAAATGGATGGTTTCGAGGGTAACACCGGTATCATCGTAATTGCAGCAACTAACAGAGCT 138820 Query 175636 GATATCCTTGAT 175647 || || |||||| Sbjct 138819 GACATTCTTGAT 138808 >seq12755 Length=243795 Score = 89.7 bits (98), Expect = 6e-13 Identities = 158/228 (69%), Gaps = 2/228 (1%) Strand=Plus/Plus Query 75128 CGGGACTATGATTTTGGTTACTTTGGTCTCAAAACCCTTGAGAAGAGCTATCT-TCAACG 75186 || |||| ||| | || ||||||||| |||||||||| |||| | ||||| | | Sbjct 39687 CGTGACTTTGACTATGATTACTTTGGCTTCAAAACCCTGGAGAGGTCTTATCTCTTGAAA 39746 Query 75187 GCTCGATGGCATCCTCATGGAAACCCCACAGTACATGTTCATGCGGGTCGCAATCGGCAT 75246 | || | || | | || |||| || ||| | ||||| ||| |||| || | || || Sbjct 39747 GTTCAAGGGAAGGTT-ATAGAAAGGCCTCAGCATATGTTAATGAGGGTTGCTGTTGGAAT 39805 Query 75247 CCACGGGGAAGACATTGATTCTGTCTTGGAGACATACGACAAGATGTCCCAAGGTATGTT 75306 || ||| ||||||||||||| | | || || ||| |||||| ||| | ||| Sbjct 39806 TCATAAGGATGACATTGATTCTGCTATAAAAACTTATCACATGATGTCTCAAAGATGGTT 39865 Query 75307 CATTCACGCAACACCAACCCTCTTCAATGCTGGTACACCAAGACCGCA 75354 || ||| || | || || || ||||||||||| || ||||| || || Sbjct 39866 CACTCATGCTTCTCCCACTCTTTTCAATGCTGGCACTCCAAGGCCTCA 39913 >seq8664 Length=49552 Score = 89.7 bits (98), Expect = 6e-13 Identities = 158/228 (69%), Gaps = 2/228 (1%) Strand=Plus/Plus Query 75128 CGGGACTATGATTTTGGTTACTTTGGTCTCAAAACCCTTGAGAAGAGCTATCT-TCAACG 75186 || |||| ||| | || ||||||||| |||||||||| |||| | ||||| | | Sbjct 44683 CGTGACTTTGACTATGATTACTTTGGCTTCAAAACCCTGGAGAGGTCTTATCTCTTGAAA 44742 Query 75187 GCTCGATGGCATCCTCATGGAAACCCCACAGTACATGTTCATGCGGGTCGCAATCGGCAT 75246 | || | || | | || |||| || ||| | ||||| ||| |||| || | || || Sbjct 44743 GTTCAAGGGAAGGTT-ATAGAAAGGCCTCAGCATATGTTAATGAGGGTTGCTGTTGGAAT 44801 Query 75247 CCACGGGGAAGACATTGATTCTGTCTTGGAGACATACGACAAGATGTCCCAAGGTATGTT 75306 || ||| ||||||||||||| | | || || ||| |||||| ||| | ||| Sbjct 44802 TCATAAGGATGACATTGATTCTGCTATAAAAACTTATCACATGATGTCTCAAAGATGGTT 44861 Query 75307 CATTCACGCAACACCAACCCTCTTCAATGCTGGTACACCAAGACCGCA 75354 || ||| || | || || || ||||||||||| || ||||| || || Sbjct 44862 CACTCATGCTTCTCCCACTCTTTTCAATGCTGGGACTCCAAGGCCTCA 44909 Score = 89.7 bits (98), Expect = 6e-13 Identities = 158/228 (69%), Gaps = 2/228 (1%) Strand=Plus/Plus Query 75128 CGGGACTATGATTTTGGTTACTTTGGTCTCAAAACCCTTGAGAAGAGCTATCT-TCAACG 75186 || |||| ||| | | ||||||||| |||||||||| |||| | ||||| | | Sbjct 49108 CGTGACTTTGACTACGATTACTTTGGCTTCAAAACCCTGGAGAGGTCTTATCTCTTGAAA 49167 Query 75187 GCTCGATGGCATCCTCATGGAAACCCCACAGTACATGTTCATGCGGGTCGCAATCGGCAT 75246 | || | || | | || |||| || ||| ||||||| ||| |||| || | || || Sbjct 49168 GTTCAAGGGAAGGTT-ATAGAAAGGCCTCAGCACATGTTAATGAGGGTTGCTGTTGGAAT 49226 Query 75247 CCACGGGGAAGACATTGATTCTGTCTTGGAGACATACGACAAGATGTCCCAAGGTATGTT 75306 || ||| ||||||||||||| | | || || ||| |||||| ||| | ||| Sbjct 49227 TCATAAGGATGACATTGATTCTGCTATAAAAACTTATCACATGATGTCTCAAAGATGGTT 49286 Query 75307 CATTCACGCAACACCAACCCTCTTCAATGCTGGTACACCAAGACCGCA 75354 || ||| || | || || || ||||||||||| || ||||| || || Sbjct 49287 CACTCATGCTTCTCCCACTCTTTTCAATGCTGGGACTCCAAGGCCTCA 49334 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 596347743222880