Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Gossypium_20barbadense_20[genbank_20GCA_5F001856525.1_202016-11-03]
29,751 sequences; 2,566,742,836 total letters
Query= NC_021858.1
Length=1908524
Score E
Sequences producing significant alignments: (Bits) Value
seq28581 176 5e-38
seq29212 168 8e-36
seq22586 167 3e-35
seq7920 167 3e-35
>seq28581
Length=397638
Score = 176 bits (194), Expect = 5e-38
Identities = 217/295 (74%), Gaps = 4/295 (1%)
Strand=Plus/Plus
Query 869634 AGTGGATGTTCTCGATGGCGATCTGGAAGCCGTAAAAGGCCCTCACCTCTGCCACTTGGA 869693
||||||| |||||||||||||| ||||| || ||||| || | | ||||||| | |||||
Sbjct 34935 AGTGGATATTCTCGATGGCGATTTGGAATCCATAAAATGCACGCGCCTCTGCGATTTGGA 34994
Query 869694 CCTCCTTCATGAACCGGCCGGCCAGGTTCTCGGCCACGATGCCGTCGCTGGCGGCGAAAA 869753
|||| |||||||| || |||| || || ||| |||||||| ||| ||||||||
Sbjct 34995 CCTCTTTCATGAAGCGAACGGCGAGATTTTCGAGGACGATGCCATCGGATGCGGCGAAGT 35054
Query 869754 AAGCCAGGACGTGCTTGATAAAGTGGCGCTCGTCGTCGCTGAGCGACACCCA--GTGGAC 869811
| || || || || |||| |||||||| |||||| || | || ||| |||||
Sbjct 35055 AGGCAAGAACATGACTGATGAAGTGGCGTTCGTCGGCGGTAAGATTTTGCCAGTGTGGAA 35114
Query 869812 GGTGTCGGCGCTGAGGTCCACCTCCTCGGCGGTCCAGATCGAGGCCTCGGCCTTTTTGTA 869871
| |||| ||| || || |||||||| ||||| | ||||| ||||| || |||||
Sbjct 35115 G--ATCGGAAGAGAGATCAACTTCCTCGGCAGTCCAAAAAGAGGCTTCGGCTTTCTTGTA 35172
Query 869872 CATCTCCCATACTTGCTGGTAGCGGATAGGGAAGAGGACAAAGCGGTTGGGGTTG 869926
||| ||||||| || |||| |||| ||||| | | ||||||| ||||||
Sbjct 35173 CATTTCCCATATCTGTGGGTATTGGATTGGGAACATGCAGAAGCGGTCCGGGTTG 35227
Score = 138 bits (152), Expect = 1e-26
Identities = 190/266 (71%), Gaps = 6/266 (2%)
Strand=Plus/Plus
Query 869179 ACCTTCGTCGCGACTGATCATTTCGTTGCTAAAGGCGAGGCCGGGCATGAGGCCGCGCTT 869238
|||||| || ||| ||||| ||||| || | | || ||||| | ||||||||
Sbjct 34103 ACCTTCATCTCGAGAGATCAACTCGTTTGAGAAAGTTAATCCAGGCATTAACCCGCGCTT 34162
Query 869239 CTTGAGCCAAAAGATGGCGCAGAAACTGCCCGAGAAAAAGATGCCCTCGACGGCGGCAAA 869298
|| | |||||| || |||||||||||||| |||||||| ||||| || ||| || ||
Sbjct 34163 TTTTAACCAAAATATCGCGCAGAAACTGCCGGAGAAAAATATGCCTTCTACGCAAGCGAA 34222
Query 869299 GCCGATGAGCCGCTCGGCAAAGGTGTCGAGGCCCTCCTTGTTGATCCACTTCATCGCCCA 869358
|||| | ||| |||||||| | ||| |||| || |||||| || | |||||
Sbjct 34223 AGCGATTAACCGTTCGGCAAAAGCTTCGCGGCC------GTCGATCCATTTGAAAGCCCA 34276
Query 869359 GTCGGCCTTTTTCCTCACCGACGGCACCGTGTCGATGGCGCGAAAGAGGTGGTCCTTTTC 869418
||||| ||||| ||| |||||||||| || | ||| | |||||| ||| |||||
Sbjct 34277 ATCGGCTTTTTTAGCCACGCACGGCACCGTTTCAGTAGCGTGGAAGAGGCGGTTTTTTTC 34336
Query 869419 GGCCGGGTCCTTGACATAGGTGTCGA 869444
|| | || |||| ||| || ||||
Sbjct 34337 GGTGGAATCTTTGATATAAGTTTCGA 34362
>seq29212
Length=358297
Score = 168 bits (186), Expect = 8e-36
Identities = 216/296 (73%), Gaps = 4/296 (1%)
Strand=Plus/Minus
Query 869633 GAGTGGATGTTCTCGATGGCGATCTGGAAGCCGTAAAAGGCCCTCACCTCTGCCACTTGG 869692
|||||||| |||||||||||||| ||||| || ||||| || | | |||| || | ||||
Sbjct 222923 GAGTGGATATTCTCGATGGCGATTTGGAATCCATAAAATGCACGCGCCTCCGCGATTTGG 222864
Query 869693 ACCTCCTTCATGAACCGGCCGGCCAGGTTCTCGGCCACGATGCCGTCGCTGGCGGCGAAA 869752
||||| |||||||| || | || || || || |||||||| ||| ||||||||
Sbjct 222863 ACCTCTTTCATGAAGCGAACAGCGAGATTTTCTAGAACGATGCCATCGGATGCGGCGAAG 222804
Query 869753 AAAGCCAGGACGTGCTTGATAAAGTGGCGCTCGTCGTCGCTGAGCGACACCCA--GTGGA 869810
|| || ||||| || |||| |||||||| |||||| || | || ||| |||||
Sbjct 222803 AAGGCAAGGACATGACTGATGAAGTGGCGTTCGTCGGCGTTAAGATTTTGCCAGTGTGGA 222744
Query 869811 CGGTGTCGGCGCTGAGGTCCACCTCCTCGGCGGTCCAGATCGAGGCCTCGGCCTTTTTGT 869870
| |||| ||| || || |||||||| ||||| | ||||| ||||| || || |
Sbjct 222743 AG--ATCGGAAGAGAGATCAACTTCCTCGGCAGTCCAAAAAGAGGCTTCGGCTTTCTTAT 222686
Query 869871 ACATCTCCCATACTTGCTGGTAGCGGATAGGGAAGAGGACAAAGCGGTTGGGGTTG 869926
|||| ||||||| || |||| |||| ||||| | | ||||||| ||||||
Sbjct 222685 ACATTTCCCATATCTGTGGGTATTGGATTGGGAACATGCAGAAGCGGTCCGGGTTG 222630
Score = 132 bits (146), Expect = 6e-25
Identities = 193/273 (71%), Gaps = 6/273 (2%)
Strand=Plus/Minus
Query 869179 ACCTTCGTCGCGACTGATCATTTCGTTGCTAAAGGCGAGGCCGGGCATGAGGCCGCGCTT 869238
|||||| || ||| ||||| ||||| || | | || ||||| | ||||||||
Sbjct 223203 ACCTTCATCTCGAGAGATCAACTCGTTTGAGAAAGTTAATCCAGGCATTAACCCGCGCTT 223144
Query 869239 CTTGAGCCAAAAGATGGCGCAGAAACTGCCCGAGAAAAAGATGCCCTCGACGGCGGCAAA 869298
|| | |||||| || || ||||||||||| |||||||| ||||| || ||| || ||
Sbjct 223143 TTTTAACCAAAATATCGCACAGAAACTGCCGGAGAAAAATATGCCTTCTACGCAAGCGAA 223084
Query 869299 GCCGATGAGCCGCTCGGCAAAGGTGTCGAGGCCCTCCTTGTTGATCCACTTCATCGCCCA 869358
|||| | ||| |||||||| | ||| ||| || |||||| |||| |||||
Sbjct 223083 AGCGATTAACCGTTCGGCAAAAGCTTCGCCGCC------GTCGATCCATTTCAAAGCCCA 223030
Query 869359 GTCGGCCTTTTTCCTCACCGACGGCACCGTGTCGATGGCGCGAAAGAGGTGGTCCTTTTC 869418
||||| ||||| ||| |||||||||| || | ||| | |||||| ||| |||||
Sbjct 223029 ATCGGCTTTTTTAGCCACGCACGGCACCGTTTCAGTAGCGTGGAAGAGGCGGTTTTTTTC 222970
Query 869419 GGCCGGGTCCTTGACATAGGTGTCGATCAGGAG 869451
|| | || || | ||| || |||| |||||
Sbjct 222969 GGTGGAATCTTTAATATAAGTTTCGAGGAGGAG 222937
>seq22586
Length=877411
Score = 167 bits (184), Expect = 3e-35
Identities = 228/313 (73%), Gaps = 4/313 (1%)
Strand=Plus/Plus
Query 869633 GAGTGGATGTTCTCGATGGCGATCTGGAAGCCGTAAAAGGCCCTCACCTCTGCCACTTGG 869692
|||||||| || ||||| ||||| ||||| || ||||| || | | |||| | | |||
Sbjct 444118 GAGTGGATATTTTCGATAGCGATTTGGAAACCATAAAAAGCACGCGCCTCGGAGATCTGG 444177
Query 869693 ACCTCCTTCATGAACCGGCCGGCCAGGTTCTCGGCCACGATGCCGTCGCTGGCGGCGAAA 869752
||||| ||||||||||| | || |||||||| || ||||| ||| ||||||||||
Sbjct 444178 ACCTCTTTCATGAACCGAACAGCAAGGTTCTCAAGGACTATGCCATCGGAGGCGGCGAAA 444237
Query 869753 AAAGCCAGGACGTGCTTGATAAAGTGGCGCTCGTCGTCGCTGAGCGACACCCAGTGGACG 869812
|| || || ||||| | || ||||| |||| ||| || |||| | |||||| ||||
Sbjct 444238 AAGGCGAGAACGTGACTAATGAAGTGATGCTCATCGGCGGTGAGAGTTTCCCAGT-GACG 444296
Query 869813 GTG-TCGGCGCTGAGGTCCACCTCCTCGGCGGTCCAGATCGAGGCCTCGGCCTTTTTGTA 869871
| |||| || || || ||||| |||||||| | ||| || ||||| || |||||
Sbjct 444297 AAGATCGGAAGACAGATCGACTTCCTCTGCGGTCCAAAACGACGCTTCGGCTTTCTTGTA 444356
Query 869872 CATCTCCCATACTTGCTGGTAGCGGATAGGGAAGAGGACA-AAGCGGTTGGGGTTGTCGC 869930
||| |||||||||| |||| |||| || || | ||| || |||| ||||| ||
Sbjct 444357 CATTTCCCATACTTCTGGGTATTGGATCGGAAACA-TACAGAATCGGTCTGGGTTCGCGG 444415
Query 869931 GCAACAGGGGTTC 869943
|| ||| || ||
Sbjct 444416 CCAGCAGTGGCTC 444428
Score = 167 bits (184), Expect = 3e-35
Identities = 228/313 (73%), Gaps = 4/313 (1%)
Strand=Plus/Plus
Query 869633 GAGTGGATGTTCTCGATGGCGATCTGGAAGCCGTAAAAGGCCCTCACCTCTGCCACTTGG 869692
|||||||| || ||||| ||||| ||||| || ||||| || | | |||| | | |||
Sbjct 447253 GAGTGGATATTTTCGATAGCGATTTGGAAACCATAAAAAGCACGCGCCTCGGAGATCTGG 447312
Query 869693 ACCTCCTTCATGAACCGGCCGGCCAGGTTCTCGGCCACGATGCCGTCGCTGGCGGCGAAA 869752
||||| ||||||||||| | || |||||||| || ||||| ||| ||||||||||
Sbjct 447313 ACCTCTTTCATGAACCGAACAGCAAGGTTCTCAAGGACTATGCCATCGGAGGCGGCGAAA 447372
Query 869753 AAAGCCAGGACGTGCTTGATAAAGTGGCGCTCGTCGTCGCTGAGCGACACCCAGTGGACG 869812
|| || || ||||| | || ||||| |||| ||| || |||| | |||||| ||||
Sbjct 447373 AAGGCGAGAACGTGACTAATGAAGTGATGCTCATCGGCGGTGAGAGTTTCCCAGT-GACG 447431
Query 869813 GTG-TCGGCGCTGAGGTCCACCTCCTCGGCGGTCCAGATCGAGGCCTCGGCCTTTTTGTA 869871
| |||| || || || ||||| |||||||| | ||| || ||||| || |||||
Sbjct 447432 AAGATCGGAAGACAGATCGACTTCCTCTGCGGTCCAAAACGACGCTTCGGCTTTCTTGTA 447491
Query 869872 CATCTCCCATACTTGCTGGTAGCGGATAGGGAAGAGGACA-AAGCGGTTGGGGTTGTCGC 869930
||| |||||||||| |||| |||| || || | ||| || |||| ||||| ||
Sbjct 447492 CATTTCCCATACTTCTGGGTATTGGATCGGAAACA-TACAGAATCGGTCTGGGTTCGCGG 447550
Query 869931 GCAACAGGGGTTC 869943
|| ||| || ||
Sbjct 447551 CCAGCAGTGGCTC 447563
Score = 138 bits (152), Expect = 1e-26
Identities = 170/233 (73%), Gaps = 6/233 (3%)
Strand=Plus/Plus
Query 869219 CCGGGCATGAGGCCGCGCTTCTTGAGCCAAAAGATGGCGCAGAAACTGCCCGAGAAAAAG 869278
|||||||| | || | ||| || | |||||| ||||| |||||||| || |||||||||
Sbjct 443878 CCGGGCATTAACCCCCTCTTTTTTAACCAAAATATGGCACAGAAACTTCCGGAGAAAAAG 443937
Query 869279 ATGCCCTCGACGGCGGCAAAGCCGATGAGCCGCTCGGCAAAGGTGTCGAGGCCCTCCTTG 869338
|| ||||| ||| ||||| |||| | ||| ||||| || || || ||| |
Sbjct 443938 ATCCCCTCTACGCAAGCAAAAGCGATTAACCGTTCGGCGAAAGTTTCTCCGCC------G 443991
Query 869339 TTGATCCACTTCATCGCCCAGTCGGCCTTTTTCCTCACCGACGGCACCGTGTCGATGGCG 869398
| |||||| ||||| ||||| ||||| ||||| ||| |||||||||| |||||||||
Sbjct 443992 TCGATCCATTTCATAGCCCACTCGGCTTTTTTAGCCACACACGGCACCGTCTCGATGGCG 444051
Query 869399 CGAAAGAGGTGGTCCTTTTCGGCCGGGTCCTTGACATAGGTGTCGATCAGGAG 869451
|| || || ||| |||||| | | || || | || || |||| |||||
Sbjct 444052 CGGAAAAGACGGTTCTTTTCATCGGAATCTTTTATGTAAGTCTCGAGAAGGAG 444104
Score = 138 bits (152), Expect = 1e-26
Identities = 170/233 (73%), Gaps = 6/233 (3%)
Strand=Plus/Plus
Query 869219 CCGGGCATGAGGCCGCGCTTCTTGAGCCAAAAGATGGCGCAGAAACTGCCCGAGAAAAAG 869278
|||||||| | || | ||| || | |||||| ||||| |||||||| || |||||||||
Sbjct 447013 CCGGGCATTAACCCCCTCTTTTTTAACCAAAATATGGCACAGAAACTTCCGGAGAAAAAG 447072
Query 869279 ATGCCCTCGACGGCGGCAAAGCCGATGAGCCGCTCGGCAAAGGTGTCGAGGCCCTCCTTG 869338
|| ||||| ||| ||||| |||| | ||| ||||| || || || ||| |
Sbjct 447073 ATCCCCTCTACGCAAGCAAAAGCGATTAACCGTTCGGCGAAAGTTTCTCCGCC------G 447126
Query 869339 TTGATCCACTTCATCGCCCAGTCGGCCTTTTTCCTCACCGACGGCACCGTGTCGATGGCG 869398
| |||||| ||||| ||||| ||||| ||||| ||| |||||||||| |||||||||
Sbjct 447127 TCGATCCATTTCATAGCCCACTCGGCTTTTTTAGCCACACACGGCACCGTCTCGATGGCG 447186
Query 869399 CGAAAGAGGTGGTCCTTTTCGGCCGGGTCCTTGACATAGGTGTCGATCAGGAG 869451
|| || || ||| |||||| | | || || | || || |||| |||||
Sbjct 447187 CGGAAAAGACGGTTCTTTTCATCGGAATCTTTTATGTAAGTCTCGAGAAGGAG 447239
>seq7920
Length=357604
Score = 167 bits (184), Expect = 3e-35
Identities = 228/313 (73%), Gaps = 4/313 (1%)
Strand=Plus/Minus
Query 869633 GAGTGGATGTTCTCGATGGCGATCTGGAAGCCGTAAAAGGCCCTCACCTCTGCCACTTGG 869692
|||||||| || ||||| ||||| ||||| || ||||| || | | |||| | | |||
Sbjct 357597 GAGTGGATATTTTCGATAGCGATTTGGAAACCATAAAAAGCACGCGCCTCGGAGATCTGG 357538
Query 869693 ACCTCCTTCATGAACCGGCCGGCCAGGTTCTCGGCCACGATGCCGTCGCTGGCGGCGAAA 869752
||||| ||||||||||| | || |||||||| || ||||| ||| ||||||||||
Sbjct 357537 ACCTCTTTCATGAACCGAACAGCAAGGTTCTCAAGGACTATGCCATCGGAGGCGGCGAAA 357478
Query 869753 AAAGCCAGGACGTGCTTGATAAAGTGGCGCTCGTCGTCGCTGAGCGACACCCAGTGGACG 869812
|| || || ||||| | || ||||| |||| ||| || |||| | |||||| ||||
Sbjct 357477 AAGGCGAGAACGTGACTAATGAAGTGATGCTCATCGGCGGTGAGAGTTTCCCAGT-GACG 357419
Query 869813 GTG-TCGGCGCTGAGGTCCACCTCCTCGGCGGTCCAGATCGAGGCCTCGGCCTTTTTGTA 869871
| |||| || || || ||||| |||||||| | ||| || ||||| || |||||
Sbjct 357418 AAGATCGGAAGACAGATCGACTTCCTCTGCGGTCCAAAACGACGCTTCGGCTTTCTTGTA 357359
Query 869872 CATCTCCCATACTTGCTGGTAGCGGATAGGGAAGAGGACA-AAGCGGTTGGGGTTGTCGC 869930
||| |||||||||| |||| |||| || || | ||| || |||| ||||| ||
Sbjct 357358 CATTTCCCATACTTCTGGGTATTGGATCGGAAACA-TACAGAATCGGTCTGGGTTCGCGG 357300
Query 869931 GCAACAGGGGTTC 869943
|| ||| || ||
Sbjct 357299 CCAGCAGTGGCTC 357287
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 6104697693616067
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