Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Gossypium_20barbadense_20[genbank_20GCA_5F001856525.1_202016-11-03] 29,751 sequences; 2,566,742,836 total letters Query= NC_021858.1 Length=1908524 Score E Sequences producing significant alignments: (Bits) Value seq28581 176 5e-38 seq29212 168 8e-36 seq22586 167 3e-35 seq7920 167 3e-35 >seq28581 Length=397638 Score = 176 bits (194), Expect = 5e-38 Identities = 217/295 (74%), Gaps = 4/295 (1%) Strand=Plus/Plus Query 869634 AGTGGATGTTCTCGATGGCGATCTGGAAGCCGTAAAAGGCCCTCACCTCTGCCACTTGGA 869693 ||||||| |||||||||||||| ||||| || ||||| || | | ||||||| | ||||| Sbjct 34935 AGTGGATATTCTCGATGGCGATTTGGAATCCATAAAATGCACGCGCCTCTGCGATTTGGA 34994 Query 869694 CCTCCTTCATGAACCGGCCGGCCAGGTTCTCGGCCACGATGCCGTCGCTGGCGGCGAAAA 869753 |||| |||||||| || |||| || || ||| |||||||| ||| |||||||| Sbjct 34995 CCTCTTTCATGAAGCGAACGGCGAGATTTTCGAGGACGATGCCATCGGATGCGGCGAAGT 35054 Query 869754 AAGCCAGGACGTGCTTGATAAAGTGGCGCTCGTCGTCGCTGAGCGACACCCA--GTGGAC 869811 | || || || || |||| |||||||| |||||| || | || ||| ||||| Sbjct 35055 AGGCAAGAACATGACTGATGAAGTGGCGTTCGTCGGCGGTAAGATTTTGCCAGTGTGGAA 35114 Query 869812 GGTGTCGGCGCTGAGGTCCACCTCCTCGGCGGTCCAGATCGAGGCCTCGGCCTTTTTGTA 869871 | |||| ||| || || |||||||| ||||| | ||||| ||||| || ||||| Sbjct 35115 G--ATCGGAAGAGAGATCAACTTCCTCGGCAGTCCAAAAAGAGGCTTCGGCTTTCTTGTA 35172 Query 869872 CATCTCCCATACTTGCTGGTAGCGGATAGGGAAGAGGACAAAGCGGTTGGGGTTG 869926 ||| ||||||| || |||| |||| ||||| | | ||||||| |||||| Sbjct 35173 CATTTCCCATATCTGTGGGTATTGGATTGGGAACATGCAGAAGCGGTCCGGGTTG 35227 Score = 138 bits (152), Expect = 1e-26 Identities = 190/266 (71%), Gaps = 6/266 (2%) Strand=Plus/Plus Query 869179 ACCTTCGTCGCGACTGATCATTTCGTTGCTAAAGGCGAGGCCGGGCATGAGGCCGCGCTT 869238 |||||| || ||| ||||| ||||| || | | || ||||| | |||||||| Sbjct 34103 ACCTTCATCTCGAGAGATCAACTCGTTTGAGAAAGTTAATCCAGGCATTAACCCGCGCTT 34162 Query 869239 CTTGAGCCAAAAGATGGCGCAGAAACTGCCCGAGAAAAAGATGCCCTCGACGGCGGCAAA 869298 || | |||||| || |||||||||||||| |||||||| ||||| || ||| || || Sbjct 34163 TTTTAACCAAAATATCGCGCAGAAACTGCCGGAGAAAAATATGCCTTCTACGCAAGCGAA 34222 Query 869299 GCCGATGAGCCGCTCGGCAAAGGTGTCGAGGCCCTCCTTGTTGATCCACTTCATCGCCCA 869358 |||| | ||| |||||||| | ||| |||| || |||||| || | ||||| Sbjct 34223 AGCGATTAACCGTTCGGCAAAAGCTTCGCGGCC------GTCGATCCATTTGAAAGCCCA 34276 Query 869359 GTCGGCCTTTTTCCTCACCGACGGCACCGTGTCGATGGCGCGAAAGAGGTGGTCCTTTTC 869418 ||||| ||||| ||| |||||||||| || | ||| | |||||| ||| ||||| Sbjct 34277 ATCGGCTTTTTTAGCCACGCACGGCACCGTTTCAGTAGCGTGGAAGAGGCGGTTTTTTTC 34336 Query 869419 GGCCGGGTCCTTGACATAGGTGTCGA 869444 || | || |||| ||| || |||| Sbjct 34337 GGTGGAATCTTTGATATAAGTTTCGA 34362 >seq29212 Length=358297 Score = 168 bits (186), Expect = 8e-36 Identities = 216/296 (73%), Gaps = 4/296 (1%) Strand=Plus/Minus Query 869633 GAGTGGATGTTCTCGATGGCGATCTGGAAGCCGTAAAAGGCCCTCACCTCTGCCACTTGG 869692 |||||||| |||||||||||||| ||||| || ||||| || | | |||| || | |||| Sbjct 222923 GAGTGGATATTCTCGATGGCGATTTGGAATCCATAAAATGCACGCGCCTCCGCGATTTGG 222864 Query 869693 ACCTCCTTCATGAACCGGCCGGCCAGGTTCTCGGCCACGATGCCGTCGCTGGCGGCGAAA 869752 ||||| |||||||| || | || || || || |||||||| ||| |||||||| Sbjct 222863 ACCTCTTTCATGAAGCGAACAGCGAGATTTTCTAGAACGATGCCATCGGATGCGGCGAAG 222804 Query 869753 AAAGCCAGGACGTGCTTGATAAAGTGGCGCTCGTCGTCGCTGAGCGACACCCA--GTGGA 869810 || || ||||| || |||| |||||||| |||||| || | || ||| ||||| Sbjct 222803 AAGGCAAGGACATGACTGATGAAGTGGCGTTCGTCGGCGTTAAGATTTTGCCAGTGTGGA 222744 Query 869811 CGGTGTCGGCGCTGAGGTCCACCTCCTCGGCGGTCCAGATCGAGGCCTCGGCCTTTTTGT 869870 | |||| ||| || || |||||||| ||||| | ||||| ||||| || || | Sbjct 222743 AG--ATCGGAAGAGAGATCAACTTCCTCGGCAGTCCAAAAAGAGGCTTCGGCTTTCTTAT 222686 Query 869871 ACATCTCCCATACTTGCTGGTAGCGGATAGGGAAGAGGACAAAGCGGTTGGGGTTG 869926 |||| ||||||| || |||| |||| ||||| | | ||||||| |||||| Sbjct 222685 ACATTTCCCATATCTGTGGGTATTGGATTGGGAACATGCAGAAGCGGTCCGGGTTG 222630 Score = 132 bits (146), Expect = 6e-25 Identities = 193/273 (71%), Gaps = 6/273 (2%) Strand=Plus/Minus Query 869179 ACCTTCGTCGCGACTGATCATTTCGTTGCTAAAGGCGAGGCCGGGCATGAGGCCGCGCTT 869238 |||||| || ||| ||||| ||||| || | | || ||||| | |||||||| Sbjct 223203 ACCTTCATCTCGAGAGATCAACTCGTTTGAGAAAGTTAATCCAGGCATTAACCCGCGCTT 223144 Query 869239 CTTGAGCCAAAAGATGGCGCAGAAACTGCCCGAGAAAAAGATGCCCTCGACGGCGGCAAA 869298 || | |||||| || || ||||||||||| |||||||| ||||| || ||| || || Sbjct 223143 TTTTAACCAAAATATCGCACAGAAACTGCCGGAGAAAAATATGCCTTCTACGCAAGCGAA 223084 Query 869299 GCCGATGAGCCGCTCGGCAAAGGTGTCGAGGCCCTCCTTGTTGATCCACTTCATCGCCCA 869358 |||| | ||| |||||||| | ||| ||| || |||||| |||| ||||| Sbjct 223083 AGCGATTAACCGTTCGGCAAAAGCTTCGCCGCC------GTCGATCCATTTCAAAGCCCA 223030 Query 869359 GTCGGCCTTTTTCCTCACCGACGGCACCGTGTCGATGGCGCGAAAGAGGTGGTCCTTTTC 869418 ||||| ||||| ||| |||||||||| || | ||| | |||||| ||| ||||| Sbjct 223029 ATCGGCTTTTTTAGCCACGCACGGCACCGTTTCAGTAGCGTGGAAGAGGCGGTTTTTTTC 222970 Query 869419 GGCCGGGTCCTTGACATAGGTGTCGATCAGGAG 869451 || | || || | ||| || |||| ||||| Sbjct 222969 GGTGGAATCTTTAATATAAGTTTCGAGGAGGAG 222937 >seq22586 Length=877411 Score = 167 bits (184), Expect = 3e-35 Identities = 228/313 (73%), Gaps = 4/313 (1%) Strand=Plus/Plus Query 869633 GAGTGGATGTTCTCGATGGCGATCTGGAAGCCGTAAAAGGCCCTCACCTCTGCCACTTGG 869692 |||||||| || ||||| ||||| ||||| || ||||| || | | |||| | | ||| Sbjct 444118 GAGTGGATATTTTCGATAGCGATTTGGAAACCATAAAAAGCACGCGCCTCGGAGATCTGG 444177 Query 869693 ACCTCCTTCATGAACCGGCCGGCCAGGTTCTCGGCCACGATGCCGTCGCTGGCGGCGAAA 869752 ||||| ||||||||||| | || |||||||| || ||||| ||| |||||||||| Sbjct 444178 ACCTCTTTCATGAACCGAACAGCAAGGTTCTCAAGGACTATGCCATCGGAGGCGGCGAAA 444237 Query 869753 AAAGCCAGGACGTGCTTGATAAAGTGGCGCTCGTCGTCGCTGAGCGACACCCAGTGGACG 869812 || || || ||||| | || ||||| |||| ||| || |||| | |||||| |||| Sbjct 444238 AAGGCGAGAACGTGACTAATGAAGTGATGCTCATCGGCGGTGAGAGTTTCCCAGT-GACG 444296 Query 869813 GTG-TCGGCGCTGAGGTCCACCTCCTCGGCGGTCCAGATCGAGGCCTCGGCCTTTTTGTA 869871 | |||| || || || ||||| |||||||| | ||| || ||||| || ||||| Sbjct 444297 AAGATCGGAAGACAGATCGACTTCCTCTGCGGTCCAAAACGACGCTTCGGCTTTCTTGTA 444356 Query 869872 CATCTCCCATACTTGCTGGTAGCGGATAGGGAAGAGGACA-AAGCGGTTGGGGTTGTCGC 869930 ||| |||||||||| |||| |||| || || | ||| || |||| ||||| || Sbjct 444357 CATTTCCCATACTTCTGGGTATTGGATCGGAAACA-TACAGAATCGGTCTGGGTTCGCGG 444415 Query 869931 GCAACAGGGGTTC 869943 || ||| || || Sbjct 444416 CCAGCAGTGGCTC 444428 Score = 167 bits (184), Expect = 3e-35 Identities = 228/313 (73%), Gaps = 4/313 (1%) Strand=Plus/Plus Query 869633 GAGTGGATGTTCTCGATGGCGATCTGGAAGCCGTAAAAGGCCCTCACCTCTGCCACTTGG 869692 |||||||| || ||||| ||||| ||||| || ||||| || | | |||| | | ||| Sbjct 447253 GAGTGGATATTTTCGATAGCGATTTGGAAACCATAAAAAGCACGCGCCTCGGAGATCTGG 447312 Query 869693 ACCTCCTTCATGAACCGGCCGGCCAGGTTCTCGGCCACGATGCCGTCGCTGGCGGCGAAA 869752 ||||| ||||||||||| | || |||||||| || ||||| ||| |||||||||| Sbjct 447313 ACCTCTTTCATGAACCGAACAGCAAGGTTCTCAAGGACTATGCCATCGGAGGCGGCGAAA 447372 Query 869753 AAAGCCAGGACGTGCTTGATAAAGTGGCGCTCGTCGTCGCTGAGCGACACCCAGTGGACG 869812 || || || ||||| | || ||||| |||| ||| || |||| | |||||| |||| Sbjct 447373 AAGGCGAGAACGTGACTAATGAAGTGATGCTCATCGGCGGTGAGAGTTTCCCAGT-GACG 447431 Query 869813 GTG-TCGGCGCTGAGGTCCACCTCCTCGGCGGTCCAGATCGAGGCCTCGGCCTTTTTGTA 869871 | |||| || || || ||||| |||||||| | ||| || ||||| || ||||| Sbjct 447432 AAGATCGGAAGACAGATCGACTTCCTCTGCGGTCCAAAACGACGCTTCGGCTTTCTTGTA 447491 Query 869872 CATCTCCCATACTTGCTGGTAGCGGATAGGGAAGAGGACA-AAGCGGTTGGGGTTGTCGC 869930 ||| |||||||||| |||| |||| || || | ||| || |||| ||||| || Sbjct 447492 CATTTCCCATACTTCTGGGTATTGGATCGGAAACA-TACAGAATCGGTCTGGGTTCGCGG 447550 Query 869931 GCAACAGGGGTTC 869943 || ||| || || Sbjct 447551 CCAGCAGTGGCTC 447563 Score = 138 bits (152), Expect = 1e-26 Identities = 170/233 (73%), Gaps = 6/233 (3%) Strand=Plus/Plus Query 869219 CCGGGCATGAGGCCGCGCTTCTTGAGCCAAAAGATGGCGCAGAAACTGCCCGAGAAAAAG 869278 |||||||| | || | ||| || | |||||| ||||| |||||||| || ||||||||| Sbjct 443878 CCGGGCATTAACCCCCTCTTTTTTAACCAAAATATGGCACAGAAACTTCCGGAGAAAAAG 443937 Query 869279 ATGCCCTCGACGGCGGCAAAGCCGATGAGCCGCTCGGCAAAGGTGTCGAGGCCCTCCTTG 869338 || ||||| ||| ||||| |||| | ||| ||||| || || || ||| | Sbjct 443938 ATCCCCTCTACGCAAGCAAAAGCGATTAACCGTTCGGCGAAAGTTTCTCCGCC------G 443991 Query 869339 TTGATCCACTTCATCGCCCAGTCGGCCTTTTTCCTCACCGACGGCACCGTGTCGATGGCG 869398 | |||||| ||||| ||||| ||||| ||||| ||| |||||||||| ||||||||| Sbjct 443992 TCGATCCATTTCATAGCCCACTCGGCTTTTTTAGCCACACACGGCACCGTCTCGATGGCG 444051 Query 869399 CGAAAGAGGTGGTCCTTTTCGGCCGGGTCCTTGACATAGGTGTCGATCAGGAG 869451 || || || ||| |||||| | | || || | || || |||| ||||| Sbjct 444052 CGGAAAAGACGGTTCTTTTCATCGGAATCTTTTATGTAAGTCTCGAGAAGGAG 444104 Score = 138 bits (152), Expect = 1e-26 Identities = 170/233 (73%), Gaps = 6/233 (3%) Strand=Plus/Plus Query 869219 CCGGGCATGAGGCCGCGCTTCTTGAGCCAAAAGATGGCGCAGAAACTGCCCGAGAAAAAG 869278 |||||||| | || | ||| || | |||||| ||||| |||||||| || ||||||||| Sbjct 447013 CCGGGCATTAACCCCCTCTTTTTTAACCAAAATATGGCACAGAAACTTCCGGAGAAAAAG 447072 Query 869279 ATGCCCTCGACGGCGGCAAAGCCGATGAGCCGCTCGGCAAAGGTGTCGAGGCCCTCCTTG 869338 || ||||| ||| ||||| |||| | ||| ||||| || || || ||| | Sbjct 447073 ATCCCCTCTACGCAAGCAAAAGCGATTAACCGTTCGGCGAAAGTTTCTCCGCC------G 447126 Query 869339 TTGATCCACTTCATCGCCCAGTCGGCCTTTTTCCTCACCGACGGCACCGTGTCGATGGCG 869398 | |||||| ||||| ||||| ||||| ||||| ||| |||||||||| ||||||||| Sbjct 447127 TCGATCCATTTCATAGCCCACTCGGCTTTTTTAGCCACACACGGCACCGTCTCGATGGCG 447186 Query 869399 CGAAAGAGGTGGTCCTTTTCGGCCGGGTCCTTGACATAGGTGTCGATCAGGAG 869451 || || || ||| |||||| | | || || | || || |||| ||||| Sbjct 447187 CGGAAAAGACGGTTCTTTTCATCGGAATCTTTTATGTAAGTCTCGAGAAGGAG 447239 >seq7920 Length=357604 Score = 167 bits (184), Expect = 3e-35 Identities = 228/313 (73%), Gaps = 4/313 (1%) Strand=Plus/Minus Query 869633 GAGTGGATGTTCTCGATGGCGATCTGGAAGCCGTAAAAGGCCCTCACCTCTGCCACTTGG 869692 |||||||| || ||||| ||||| ||||| || ||||| || | | |||| | | ||| Sbjct 357597 GAGTGGATATTTTCGATAGCGATTTGGAAACCATAAAAAGCACGCGCCTCGGAGATCTGG 357538 Query 869693 ACCTCCTTCATGAACCGGCCGGCCAGGTTCTCGGCCACGATGCCGTCGCTGGCGGCGAAA 869752 ||||| ||||||||||| | || |||||||| || ||||| ||| |||||||||| Sbjct 357537 ACCTCTTTCATGAACCGAACAGCAAGGTTCTCAAGGACTATGCCATCGGAGGCGGCGAAA 357478 Query 869753 AAAGCCAGGACGTGCTTGATAAAGTGGCGCTCGTCGTCGCTGAGCGACACCCAGTGGACG 869812 || || || ||||| | || ||||| |||| ||| || |||| | |||||| |||| Sbjct 357477 AAGGCGAGAACGTGACTAATGAAGTGATGCTCATCGGCGGTGAGAGTTTCCCAGT-GACG 357419 Query 869813 GTG-TCGGCGCTGAGGTCCACCTCCTCGGCGGTCCAGATCGAGGCCTCGGCCTTTTTGTA 869871 | |||| || || || ||||| |||||||| | ||| || ||||| || ||||| Sbjct 357418 AAGATCGGAAGACAGATCGACTTCCTCTGCGGTCCAAAACGACGCTTCGGCTTTCTTGTA 357359 Query 869872 CATCTCCCATACTTGCTGGTAGCGGATAGGGAAGAGGACA-AAGCGGTTGGGGTTGTCGC 869930 ||| |||||||||| |||| |||| || || | ||| || |||| ||||| || Sbjct 357358 CATTTCCCATACTTCTGGGTATTGGATCGGAAACA-TACAGAATCGGTCTGGGTTCGCGG 357300 Query 869931 GCAACAGGGGTTC 869943 || ||| || || Sbjct 357299 CCAGCAGTGGCTC 357287 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 6104697693616067