Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Gossypium_20barbadense_20[genbank_20GCA_5F001856525.1_202016-11-03] 29,751 sequences; 2,566,742,836 total letters Query= NC_022098.1 Length=2473870 Score E Sequences producing significant alignments: (Bits) Value seq22586 185 1e-40 seq29212 161 2e-33 seq7920 154 2e-31 seq28581 138 2e-26 >seq22586 Length=877411 Score = 185 bits (204), Expect = 1e-40 Identities = 211/284 (74%), Gaps = 6/284 (2%) Strand=Plus/Plus Query 794380 CCGGGCATGAGGCCGCGCTTCTTGAGCCAAAAGATGGCACAGAAACTGCCCGAGAAAAAG 794439 |||||||| | || | ||| || | |||||| |||||||||||||| || ||||||||| Sbjct 443878 CCGGGCATTAACCCCCTCTTTTTTAACCAAAATATGGCACAGAAACTTCCGGAGAAAAAG 443937 Query 794440 ATGCCCTCGACGGCGGCAAAGCCGACGAGCCGCTCGGCAAAAGTGTCCAGGCCCTCTTTG 794499 || ||||| ||| ||||| ||| | ||| ||||| ||||| || ||| || Sbjct 443938 ATCCCCTCTACGCAAGCAAAAGCGATTAACCGTTCGGCGAAAGTTTCTCCGCCGTC---- 443993 Query 794500 TTGATCCACTTCATCGCCCACTCTGCCTTTTTCCTCACCGAGGGCACCGTGTCGATGGCG 794559 |||||| ||||| |||||||| || ||||| ||| | |||||||| ||||||||| Sbjct 443994 --GATCCATTTCATAGCCCACTCGGCTTTTTTAGCCACACACGGCACCGTCTCGATGGCG 444051 Query 794560 CGAAAGAGGTGGTCCTTCTCGACCGGGTCCTTGACGTAGGTGTCGATGAGGAGCGAGTAG 794619 || || || ||| ||| || | | || || | ||| || |||| ||||| ||| Sbjct 444052 CGGAAAAGACGGTTCTTTTCATCGGAATCTTTTATGTAAGTCTCGAGAAGGAGACTGTAC 444111 Query 794620 GTCTCTGAGTGGATGTTTTCGATGGCGATCTGGAAGCCATAAAA 794663 |||| |||||||| |||||||| ||||| ||||| |||||||| Sbjct 444112 ATCTCGGAGTGGATATTTTCGATAGCGATTTGGAAACCATAAAA 444155 Score = 185 bits (204), Expect = 1e-40 Identities = 211/284 (74%), Gaps = 6/284 (2%) Strand=Plus/Plus Query 794380 CCGGGCATGAGGCCGCGCTTCTTGAGCCAAAAGATGGCACAGAAACTGCCCGAGAAAAAG 794439 |||||||| | || | ||| || | |||||| |||||||||||||| || ||||||||| Sbjct 447013 CCGGGCATTAACCCCCTCTTTTTTAACCAAAATATGGCACAGAAACTTCCGGAGAAAAAG 447072 Query 794440 ATGCCCTCGACGGCGGCAAAGCCGACGAGCCGCTCGGCAAAAGTGTCCAGGCCCTCTTTG 794499 || ||||| ||| ||||| ||| | ||| ||||| ||||| || ||| || Sbjct 447073 ATCCCCTCTACGCAAGCAAAAGCGATTAACCGTTCGGCGAAAGTTTCTCCGCCGTC---- 447128 Query 794500 TTGATCCACTTCATCGCCCACTCTGCCTTTTTCCTCACCGAGGGCACCGTGTCGATGGCG 794559 |||||| ||||| |||||||| || ||||| ||| | |||||||| ||||||||| Sbjct 447129 --GATCCATTTCATAGCCCACTCGGCTTTTTTAGCCACACACGGCACCGTCTCGATGGCG 447186 Query 794560 CGAAAGAGGTGGTCCTTCTCGACCGGGTCCTTGACGTAGGTGTCGATGAGGAGCGAGTAG 794619 || || || ||| ||| || | | || || | ||| || |||| ||||| ||| Sbjct 447187 CGGAAAAGACGGTTCTTTTCATCGGAATCTTTTATGTAAGTCTCGAGAAGGAGACTGTAC 447246 Query 794620 GTCTCTGAGTGGATGTTTTCGATGGCGATCTGGAAGCCATAAAA 794663 |||| |||||||| |||||||| ||||| ||||| |||||||| Sbjct 447247 ATCTCGGAGTGGATATTTTCGATAGCGATTTGGAAACCATAAAA 447290 Score = 154 bits (170), Expect = 2e-31 Identities = 196/267 (73%), Gaps = 2/267 (1%) Strand=Plus/Plus Query 796150 GCCTCGGGTACTTGGACCTCCTTCATGAAGCGGCCGGCCAGGTTCTCAGCCACGATGCCG 796209 ||||||| | |||||||| |||||||| || | || ||||||||| || ||||| Sbjct 444163 GCCTCGGAGATCTGGACCTCTTTCATGAACCGAACAGCAAGGTTCTCAAGGACTATGCCA 444222 Query 796210 TCGCTGGCGGCGAAAAAGGCGAGGACGTGCTTGATAAAGTGACGCTCGTCGTCGCTGAGC 796269 ||| |||||||||||||||||| ||||| | || |||||| |||| ||| || |||| Sbjct 444223 TCGGAGGCGGCGAAAAAGGCGAGAACGTGACTAATGAAGTGATGCTCATCGGCGGTGAGA 444282 Query 796270 GAGACCCAGTGGACCGTG-TCGGCGCCGAGGTCGACCTCCTCGGCGGTCCAAAAGGAGGC 796328 | |||||| ||| | |||| || ||||| ||||| ||||||||||| || || Sbjct 444283 GTTTCCCAGT-GACGAAGATCGGAAGACAGATCGACTTCCTCTGCGGTCCAAAACGACGC 444341 Query 796329 CTCGGCCTTTTTGTACATCTCCCATATCCGTTGGTAGCGGATGGGGAACAGAACAAAGCG 796388 ||||| || |||||||| ||||||| | |||| |||| || |||| | || || Sbjct 444342 TTCGGCTTTCTTGTACATTTCCCATACTTCTGGGTATTGGATCGGAAACATACAGAATCG 444401 Query 796389 ATTGGGGTTCTCGCGTAGCAGCGGCTC 796415 | |||||| || ||||| ||||| Sbjct 444402 GTCTGGGTTCGCGGCCAGCAGTGGCTC 444428 Score = 154 bits (170), Expect = 2e-31 Identities = 196/267 (73%), Gaps = 2/267 (1%) Strand=Plus/Plus Query 796150 GCCTCGGGTACTTGGACCTCCTTCATGAAGCGGCCGGCCAGGTTCTCAGCCACGATGCCG 796209 ||||||| | |||||||| |||||||| || | || ||||||||| || ||||| Sbjct 447298 GCCTCGGAGATCTGGACCTCTTTCATGAACCGAACAGCAAGGTTCTCAAGGACTATGCCA 447357 Query 796210 TCGCTGGCGGCGAAAAAGGCGAGGACGTGCTTGATAAAGTGACGCTCGTCGTCGCTGAGC 796269 ||| |||||||||||||||||| ||||| | || |||||| |||| ||| || |||| Sbjct 447358 TCGGAGGCGGCGAAAAAGGCGAGAACGTGACTAATGAAGTGATGCTCATCGGCGGTGAGA 447417 Query 796270 GAGACCCAGTGGACCGTG-TCGGCGCCGAGGTCGACCTCCTCGGCGGTCCAAAAGGAGGC 796328 | |||||| ||| | |||| || ||||| ||||| ||||||||||| || || Sbjct 447418 GTTTCCCAGT-GACGAAGATCGGAAGACAGATCGACTTCCTCTGCGGTCCAAAACGACGC 447476 Query 796329 CTCGGCCTTTTTGTACATCTCCCATATCCGTTGGTAGCGGATGGGGAACAGAACAAAGCG 796388 ||||| || |||||||| ||||||| | |||| |||| || |||| | || || Sbjct 447477 TTCGGCTTTCTTGTACATTTCCCATACTTCTGGGTATTGGATCGGAAACATACAGAATCG 447536 Query 796389 ATTGGGGTTCTCGCGTAGCAGCGGCTC 796415 | |||||| || ||||| ||||| Sbjct 447537 GTCTGGGTTCGCGGCCAGCAGTGGCTC 447563 >seq29212 Length=358297 Score = 161 bits (178), Expect = 2e-33 Identities = 232/325 (71%), Gaps = 8/325 (2%) Strand=Plus/Minus Query 794340 ACCTTCGTCGCGACTGATCAATTCGTT-GCTAAAGCAGAGGCCGGGCATGAGGCCGCGCT 794398 |||||| || ||| |||||| ||||| | |||| | || ||||| | ||||||| Sbjct 223203 ACCTTCATCTCGAGAGATCAACTCGTTTGAGAAAGTTAAT-CCAGGCATTAACCCGCGCT 223145 Query 794399 TCTTGAGCCAAAAGATGGCACAGAAACTGCCCGAGAAAAAGATGCCCTCGACGGCGGCAA 794458 | || | |||||| || |||||||||||||| |||||||| ||||| || ||| || | Sbjct 223144 TTTTTAACCAAAATATCGCACAGAAACTGCCGGAGAAAAATATGCCTTCTACGCAAGCGA 223085 Query 794459 AGCCGACGAGCCGCTCGGCAAAAGTGTCCAGGCCCTCTTTGTTGATCCACTTCATCGCCC 794518 | ||| | ||| |||||||||| || ||| || |||||| |||| |||| Sbjct 223084 AAGCGATTAACCGTTCGGCAAAAGCTTCGCCGCCGTC------GATCCATTTCAAAGCCC 223031 Query 794519 ACTCTGCCTTTTTCCTCACCGAGGGCACCGTGTCGATGGCGCGAAAGAGGTGGTCCTTCT 794578 | || || ||||| ||| | |||||||| || | ||| | |||||| ||| || | Sbjct 223030 AATCGGCTTTTTTAGCCACGCACGGCACCGTTTCAGTAGCGTGGAAGAGGCGGTTTTTTT 222971 Query 794579 CGACCGGGTCCTTGACGTAGGTGTCGATGAGGAGCGAGTAGGTCTCTGAGTGGATGTTTT 794638 || | || || | || || |||| |||||| || |||| |||||||| || | Sbjct 222970 CGGTGGAATCTTTAATATAAGTTTCGAGGAGGAGACTATACATCTCAGAGTGGATATTCT 222911 Query 794639 CGATGGCGATCTGGAAGCCATAAAA 794663 |||||||||| ||||| |||||||| Sbjct 222910 CGATGGCGATTTGGAATCCATAAAA 222886 Score = 138 bits (152), Expect = 2e-26 Identities = 190/266 (71%), Gaps = 0/266 (0%) Strand=Plus/Minus Query 796150 GCCTCGGGTACTTGGACCTCCTTCATGAAGCGGCCGGCCAGGTTCTCAGCCACGATGCCG 796209 ||||| | | ||||||||| ||||||||||| | || || || || |||||||| Sbjct 222878 GCCTCCGCGATTTGGACCTCTTTCATGAAGCGAACAGCGAGATTTTCTAGAACGATGCCA 222819 Query 796210 TCGCTGGCGGCGAAAAAGGCGAGGACGTGCTTGATAAAGTGACGCTCGTCGTCGCTGAGC 796269 ||| |||||||| ||||| ||||| || |||| ||||| || |||||| || | || Sbjct 222818 TCGGATGCGGCGAAGAAGGCAAGGACATGACTGATGAAGTGGCGTTCGTCGGCGTTAAGA 222759 Query 796270 GAGACCCAGTGGACCGTGTCGGCGCCGAGGTCGACCTCCTCGGCGGTCCAAAAGGAGGCC 796329 |||||| |||| ||| || || |||||||| |||||||| ||||| Sbjct 222758 TTTTGCCAGTGTGGAAGATCGGAAGAGAGATCAACTTCCTCGGCAGTCCAAAAAGAGGCT 222699 Query 796330 TCGGCCTTTTTGTACATCTCCCATATCCGTTGGTAGCGGATGGGGAACAGAACAAAGCGA 796389 ||||| || || ||||| ||||||||| || |||| |||| ||||||| ||||| Sbjct 222698 TCGGCTTTCTTATACATTTCCCATATCTGTGGGTATTGGATTGGGAACATGCAGAAGCGG 222639 Query 796390 TTGGGGTTCTCGCGTAGCAGCGGCTC 796415 | ||||| | ||||| |||||| Sbjct 222638 TCCGGGTTGGAGGCTAGCAACGGCTC 222613 >seq7920 Length=357604 Score = 154 bits (170), Expect = 2e-31 Identities = 196/267 (73%), Gaps = 2/267 (1%) Strand=Plus/Minus Query 796150 GCCTCGGGTACTTGGACCTCCTTCATGAAGCGGCCGGCCAGGTTCTCAGCCACGATGCCG 796209 ||||||| | |||||||| |||||||| || | || ||||||||| || ||||| Sbjct 357552 GCCTCGGAGATCTGGACCTCTTTCATGAACCGAACAGCAAGGTTCTCAAGGACTATGCCA 357493 Query 796210 TCGCTGGCGGCGAAAAAGGCGAGGACGTGCTTGATAAAGTGACGCTCGTCGTCGCTGAGC 796269 ||| |||||||||||||||||| ||||| | || |||||| |||| ||| || |||| Sbjct 357492 TCGGAGGCGGCGAAAAAGGCGAGAACGTGACTAATGAAGTGATGCTCATCGGCGGTGAGA 357433 Query 796270 GAGACCCAGTGGACCGTG-TCGGCGCCGAGGTCGACCTCCTCGGCGGTCCAAAAGGAGGC 796328 | |||||| ||| | |||| || ||||| ||||| ||||||||||| || || Sbjct 357432 GTTTCCCAGT-GACGAAGATCGGAAGACAGATCGACTTCCTCTGCGGTCCAAAACGACGC 357374 Query 796329 CTCGGCCTTTTTGTACATCTCCCATATCCGTTGGTAGCGGATGGGGAACAGAACAAAGCG 796388 ||||| || |||||||| ||||||| | |||| |||| || |||| | || || Sbjct 357373 TTCGGCTTTCTTGTACATTTCCCATACTTCTGGGTATTGGATCGGAAACATACAGAATCG 357314 Query 796389 ATTGGGGTTCTCGCGTAGCAGCGGCTC 796415 | |||||| || ||||| ||||| Sbjct 357313 GTCTGGGTTCGCGGCCAGCAGTGGCTC 357287 >seq28581 Length=397638 Score = 138 bits (152), Expect = 2e-26 Identities = 190/266 (71%), Gaps = 0/266 (0%) Strand=Plus/Plus Query 796150 GCCTCGGGTACTTGGACCTCCTTCATGAAGCGGCCGGCCAGGTTCTCAGCCACGATGCCG 796209 ||||| | | ||||||||| ||||||||||| |||| || || || |||||||| Sbjct 34979 GCCTCTGCGATTTGGACCTCTTTCATGAAGCGAACGGCGAGATTTTCGAGGACGATGCCA 35038 Query 796210 TCGCTGGCGGCGAAAAAGGCGAGGACGTGCTTGATAAAGTGACGCTCGTCGTCGCTGAGC 796269 ||| |||||||| |||| || || || |||| ||||| || |||||| || | || Sbjct 35039 TCGGATGCGGCGAAGTAGGCAAGAACATGACTGATGAAGTGGCGTTCGTCGGCGGTAAGA 35098 Query 796270 GAGACCCAGTGGACCGTGTCGGCGCCGAGGTCGACCTCCTCGGCGGTCCAAAAGGAGGCC 796329 |||||| |||| ||| || || |||||||| |||||||| ||||| Sbjct 35099 TTTTGCCAGTGTGGAAGATCGGAAGAGAGATCAACTTCCTCGGCAGTCCAAAAAGAGGCT 35158 Query 796330 TCGGCCTTTTTGTACATCTCCCATATCCGTTGGTAGCGGATGGGGAACAGAACAAAGCGA 796389 ||||| || |||||||| ||||||||| || |||| |||| ||||||| ||||| Sbjct 35159 TCGGCTTTCTTGTACATTTCCCATATCTGTGGGTATTGGATTGGGAACATGCAGAAGCGG 35218 Query 796390 TTGGGGTTCTCGCGTAGCAGCGGCTC 796415 | ||||| | ||||| |||||| Sbjct 35219 TCCGGGTTGGAGGCTAGCAACGGCTC 35244 Score = 111 bits (122), Expect = 2e-18 Identities = 171/242 (71%), Gaps = 8/242 (3%) Strand=Plus/Plus Query 794340 ACCTTCGTCGCGACTGATCAATTCGTT-GCTAAAGCAGAGGCCGGGCATGAGGCCGCGCT 794398 |||||| || ||| |||||| ||||| | |||| | || ||||| | ||||||| Sbjct 34103 ACCTTCATCTCGAGAGATCAACTCGTTTGAGAAAGTTAAT-CCAGGCATTAACCCGCGCT 34161 Query 794399 TCTTGAGCCAAAAGATGGCACAGAAACTGCCCGAGAAAAAGATGCCCTCGACGGCGGCAA 794458 | || | |||||| || || ||||||||||| |||||||| ||||| || ||| || | Sbjct 34162 TTTTTAACCAAAATATCGCGCAGAAACTGCCGGAGAAAAATATGCCTTCTACGCAAGCGA 34221 Query 794459 AGCCGACGAGCCGCTCGGCAAAAGTGTCCAGGCCCTCTTTGTTGATCCACTTCATCGCCC 794518 | ||| | ||| |||||||||| || |||| || |||||| || | |||| Sbjct 34222 AAGCGATTAACCGTTCGGCAAAAGCTTCGCGGCC------GTCGATCCATTTGAAAGCCC 34275 Query 794519 ACTCTGCCTTTTTCCTCACCGAGGGCACCGTGTCGATGGCGCGAAAGAGGTGGTCCTTCT 794578 | || || ||||| ||| | |||||||| || | ||| | |||||| ||| || | Sbjct 34276 AATCGGCTTTTTTAGCCACGCACGGCACCGTTTCAGTAGCGTGGAAGAGGCGGTTTTTTT 34335 Query 794579 CG 794580 || Sbjct 34336 CG 34337 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 7913081650435689