Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Gossypium_20barbadense_20[genbank_20GCA_5F001856525.1_202016-11-03]
29,751 sequences; 2,566,742,836 total letters
Query= NC_023426.1
Length=245717
Score E
Sequences producing significant alignments: (Bits) Value
seq16075 109 9e-19
seq10219 102 1e-16
seq25104 100 4e-16
seq12924 93.3 7e-14
seq481 87.8 3e-12
seq21576 84.2 3e-11
>seq16075
Length=278268
Score = 109 bits (120), Expect = 9e-19
Identities = 149/208 (72%), Gaps = 0/208 (0%)
Strand=Plus/Minus
Query 146032 TGCAAATATTCATAAAAACATTAACAGGAAAAACAATTACTATTGATGTAGAACATAACG 146091
||||||| || | ||||| | || ||||| |||||||| | || || || | |
Sbjct 276437 TGCAAATCTTTGTCAAAACTCTCACTGGAAAGACAATTACCTTGGAGGTCGAGAGTTCGG 276378
Query 146092 ATACTATTCAAAATGTAAAAAATAAAATACAACTTAAAGAAGGCATTCCACCCGATCAAC 146151
|||| ||| | ||||| ||| || || || |||||||| || ||||| || ||||
Sbjct 276377 ATACCATTGACAATGTGAAAGCCAAGATTCAGGACAAAGAAGGAATCCCACCAGACCAAC 276318
Query 146152 AAAGACTCATTTTTGCAGGTAAACAATTAGATGATAATAGAACGTTAACAGATTATAATA 146211
||||| | |||||||| || |||||| | || ||| ||||| | | ||||||||||
Sbjct 276317 AAAGATTGATTTTTGCTGGAAAACAACTTGAAGATGGAAGAACTCTTGCCGATTATAATA 276258
Query 146212 TACAAAAAGAATCGACTATCCATTTAGT 146239
| || || || || ||| ||||||| ||
Sbjct 276257 TCCAGAAGGAGTCTACTCTCCATTTGGT 276230
>seq10219
Length=308859
Score = 102 bits (112), Expect = 1e-16
Identities = 158/226 (70%), Gaps = 0/226 (0%)
Strand=Plus/Plus
Query 146032 TGCAAATATTCATAAAAACATTAACAGGAAAAACAATTACTATTGATGTAGAACATAACG 146091
||||||| || | || || | || ||||| || |||||| | || || || | |
Sbjct 29613 TGCAAATTTTTGTGAAGACTCTCACCGGAAAGACTATTACTTTGGAAGTTGAGAGTTCTG 29672
Query 146092 ATACTATTCAAAATGTAAAAAATAAAATACAACTTAAAGAAGGCATTCCACCCGATCAAC 146151
| || ||| | ||||||||| ||| || || || ||||| |||||||| ||||| |
Sbjct 29673 ACACCATTGACAATGTAAAAGCTAAGATCCAGGACAAGGAAGGGATTCCACCAGATCAGC 29732
Query 146152 AAAGACTCATTTTTGCAGGTAAACAATTAGATGATAATAGAACGTTAACAGATTATAATA 146211
| || | |||||||| || ||||| | || ||| ||| || | ||||||||||||
Sbjct 29733 AGAGGTTGATTTTTGCTGGCAAACAGCTCGAAGATGGTAGGACACTTGCAGATTATAATA 29792
Query 146212 TACAAAAAGAATCGACTATCCATTTAGTATTACGATTAAGAGGAGG 146257
| || ||||| || || |||| || || | ||| | |||||||
Sbjct 29793 TCCAGAAAGAGTCTACCCTCCACTTGGTGCTCCGACTTCGAGGAGG 29838
>seq25104
Length=148940
Score = 100 bits (110), Expect = 4e-16
Identities = 147/208 (71%), Gaps = 0/208 (0%)
Strand=Plus/Plus
Query 146032 TGCAAATATTCATAAAAACATTAACAGGAAAAACAATTACTATTGATGTAGAACATAACG 146091
||||||| || | ||||| | || ||||| |||||||| | || || || |
Sbjct 36077 TGCAAATCTTTGTCAAAACTCTCACTGGAAAGACAATTACCTTGGAGGTGGAGAGCTCGG 36136
Query 146092 ATACTATTCAAAATGTAAAAAATAAAATACAACTTAAAGAAGGCATTCCACCCGATCAAC 146151
|||| ||| | ||||| ||| || || || |||||||| || ||||| || ||||
Sbjct 36137 ATACCATTGATAATGTGAAAGCCAAGATTCAGGACAAAGAAGGAATCCCACCAGACCAAC 36196
Query 146152 AAAGACTCATTTTTGCAGGTAAACAATTAGATGATAATAGAACGTTAACAGATTATAATA 146211
||||| | |||||||| || |||||| | || ||| || || | | ||||||||||
Sbjct 36197 AAAGATTGATTTTTGCTGGAAAACAACTTGAAGATGGAAGGACTCTTGCCGATTATAATA 36256
Query 146212 TACAAAAAGAATCGACTATCCATTTAGT 146239
| || || || || ||| ||||||| ||
Sbjct 36257 TCCAGAAGGAGTCTACTCTCCATTTGGT 36284
>seq12924
Length=310248
Score = 93.3 bits (102), Expect = 7e-14
Identities = 156/226 (69%), Gaps = 0/226 (0%)
Strand=Plus/Plus
Query 146032 TGCAAATATTCATAAAAACATTAACAGGAAAAACAATTACTATTGATGTAGAACATAACG 146091
|||| || || | ||||| | || || ||||| || || |||| || ||| ||
Sbjct 59355 TGCAGATCTTTGTGAAAACCCTTACTGGTAAAACCATCACCCTTGAGGTGGAAAGCTCCG 59414
Query 146092 ATACTATTCAAAATGTAAAAAATAAAATACAACTTAAAGAAGGCATTCCACCCGATCAAC 146151
|||||||| | ||||| || ||||| ||| |||||||||||||| || || ||||
Sbjct 59415 ATACTATTGATAATGTCAAGGCCAAAATCCAAGACAAAGAAGGCATTCCTCCAGACCAAC 59474
Query 146152 AAAGACTCATTTTTGCAGGTAAACAATTAGATGATAATAGAACGTTAACAGATTATAATA 146211
| || || |||||||| || |||||| | || ||| |||| | | || || || |
Sbjct 59475 AGAGGCTTATTTTTGCCGGAAAACAACTCGAGGATGGCCGAACTCTTGCCGACTACAACA 59534
Query 146212 TACAAAAAGAATCGACTATCCATTTAGTATTACGATTAAGAGGAGG 146257
| ||||| || || || |||| |||| | || |||| || ||
Sbjct 59535 TCCAAAAGGAGTCCACCCTCCACCTAGTCCTTCGTCTAAGGGGTGG 59580
Score = 93.3 bits (102), Expect = 7e-14
Identities = 138/196 (70%), Gaps = 0/196 (0%)
Strand=Plus/Plus
Query 146032 TGCAAATATTCATAAAAACATTAACAGGAAAAACAATTACTATTGATGTAGAACATAACG 146091
||||||| || | || || | || ||||| || |||||| | || || || | |
Sbjct 73854 TGCAAATTTTTGTGAAGACTCTTACCGGAAAGACTATTACTTTGGAAGTTGAGAGTTCTG 73913
Query 146092 ATACTATTCAAAATGTAAAAAATAAAATACAACTTAAAGAAGGCATTCCACCCGATCAAC 146151
| || ||| | ||||||||| ||| || || || ||||| |||||||| ||||| |
Sbjct 73914 ACACCATTGACAATGTAAAAGCTAAGATCCAGGACAAGGAAGGGATTCCACCAGATCAGC 73973
Query 146152 AAAGACTCATTTTTGCAGGTAAACAATTAGATGATAATAGAACGTTAACAGATTATAATA 146211
| || | |||||||| || ||||| | || ||| ||| || | ||||||||||||
Sbjct 73974 AGAGGTTGATTTTTGCTGGCAAACAGCTCGAAGATGGTAGGACACTTGCAGATTATAATA 74033
Query 146212 TACAAAAAGAATCGAC 146227
| || ||||| || ||
Sbjct 74034 TCCAGAAAGAGTCTAC 74049
>seq481
Length=542854
Score = 87.8 bits (96), Expect = 3e-12
Identities = 144/208 (69%), Gaps = 0/208 (0%)
Strand=Plus/Plus
Query 146032 TGCAAATATTCATAAAAACATTAACAGGAAAAACAATTACTATTGATGTAGAACATAACG 146091
||||| | || | || || | |||||||| || ||||| | || || || | |
Sbjct 258391 TGCAAGTTTTTGTGAAGACCCTCACAGGAAAGACTATTACCTTGGAAGTTGAGAGTTCTG 258450
Query 146092 ATACTATTCAAAATGTAAAAAATAAAATACAACTTAAAGAAGGCATTCCACCCGATCAAC 146151
|||| ||| | ||||| ||| ||| || || || ||||| |||||||| |||||||
Sbjct 258451 ATACGATTGACAATGTGAAAGCTAAGATCCAGGACAAGGAAGGTATTCCACCGGATCAAC 258510
Query 146152 AAAGACTCATTTTTGCAGGTAAACAATTAGATGATAATAGAACGTTAACAGATTATAATA 146211
| || || |||||||| || || || | || ||| || || | | ||||||||||
Sbjct 258511 AGAGGCTGATTTTTGCTGGCAAGCAGCTGGAGGATGGGAGGACCCTTGCTGATTATAATA 258570
Query 146212 TACAAAAAGAATCGACTATCCATTTAGT 146239
| || ||||| || || |||| || ||
Sbjct 258571 TTCAGAAAGAGTCAACCCTCCACTTGGT 258598
>seq21576
Length=865669
Score = 84.2 bits (92), Expect = 3e-11
Identities = 147/215 (68%), Gaps = 7/215 (3%)
Strand=Plus/Plus
Query 146032 TGCAAATATTCATAAAAACATTAACAGGAAAAACAATTACTATTGATGTAGAACATAACG 146091
|||||||||| | || || | || |||||||||||||| | || || || |
Sbjct 346320 TGCAAATATTTGTCAAGACCCTCACTGGAAAAACAATTACATTGGAAGTTGAGAGTTCAA 346379
Query 146092 ATACTATTCAAAATGTAAAAAATAAAATACAACTTAAAGAAGGCATTCCACCCG------ 146145
|||||||| | | ||| ||| | ||||| || ||||| || || || |||
Sbjct 346380 ATACTATTGATATTGTGAAAGACAAAATTCAGGAAAAAGAGGGTATCCCCCCCCCGGCCC 346439
Query 146146 -ATCAACAAAGACTCATTTTTGCAGGTAAACAATTAGATGATAATAGAACGTTAACAGAT 146204
| || ||||| | ||||||||||| ||||| | || ||| || || | | |||
Sbjct 346440 AAACAGTAAAGATTAATTTTTGCAGGAGAACAACTTGAGGATGGAAGGACTCTTGCTGAT 346499
Query 146205 TATAATATACAAAAAGAATCGACTATCCATTTAGT 146239
|||||||| |||||||| || ||| | ||||| ||
Sbjct 346500 TATAATATTCAAAAAGAGTCAACTCTTCATTTGGT 346534
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 785874034542920
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |