Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Gossypium_20barbadense_20[genbank_20GCA_5F001856525.1_202016-11-03] 29,751 sequences; 2,566,742,836 total letters Query= NC_023426.1 Length=245717 Score E Sequences producing significant alignments: (Bits) Value seq16075 109 9e-19 seq10219 102 1e-16 seq25104 100 4e-16 seq12924 93.3 7e-14 seq481 87.8 3e-12 seq21576 84.2 3e-11 >seq16075 Length=278268 Score = 109 bits (120), Expect = 9e-19 Identities = 149/208 (72%), Gaps = 0/208 (0%) Strand=Plus/Minus Query 146032 TGCAAATATTCATAAAAACATTAACAGGAAAAACAATTACTATTGATGTAGAACATAACG 146091 ||||||| || | ||||| | || ||||| |||||||| | || || || | | Sbjct 276437 TGCAAATCTTTGTCAAAACTCTCACTGGAAAGACAATTACCTTGGAGGTCGAGAGTTCGG 276378 Query 146092 ATACTATTCAAAATGTAAAAAATAAAATACAACTTAAAGAAGGCATTCCACCCGATCAAC 146151 |||| ||| | ||||| ||| || || || |||||||| || ||||| || |||| Sbjct 276377 ATACCATTGACAATGTGAAAGCCAAGATTCAGGACAAAGAAGGAATCCCACCAGACCAAC 276318 Query 146152 AAAGACTCATTTTTGCAGGTAAACAATTAGATGATAATAGAACGTTAACAGATTATAATA 146211 ||||| | |||||||| || |||||| | || ||| ||||| | | |||||||||| Sbjct 276317 AAAGATTGATTTTTGCTGGAAAACAACTTGAAGATGGAAGAACTCTTGCCGATTATAATA 276258 Query 146212 TACAAAAAGAATCGACTATCCATTTAGT 146239 | || || || || ||| ||||||| || Sbjct 276257 TCCAGAAGGAGTCTACTCTCCATTTGGT 276230 >seq10219 Length=308859 Score = 102 bits (112), Expect = 1e-16 Identities = 158/226 (70%), Gaps = 0/226 (0%) Strand=Plus/Plus Query 146032 TGCAAATATTCATAAAAACATTAACAGGAAAAACAATTACTATTGATGTAGAACATAACG 146091 ||||||| || | || || | || ||||| || |||||| | || || || | | Sbjct 29613 TGCAAATTTTTGTGAAGACTCTCACCGGAAAGACTATTACTTTGGAAGTTGAGAGTTCTG 29672 Query 146092 ATACTATTCAAAATGTAAAAAATAAAATACAACTTAAAGAAGGCATTCCACCCGATCAAC 146151 | || ||| | ||||||||| ||| || || || ||||| |||||||| ||||| | Sbjct 29673 ACACCATTGACAATGTAAAAGCTAAGATCCAGGACAAGGAAGGGATTCCACCAGATCAGC 29732 Query 146152 AAAGACTCATTTTTGCAGGTAAACAATTAGATGATAATAGAACGTTAACAGATTATAATA 146211 | || | |||||||| || ||||| | || ||| ||| || | |||||||||||| Sbjct 29733 AGAGGTTGATTTTTGCTGGCAAACAGCTCGAAGATGGTAGGACACTTGCAGATTATAATA 29792 Query 146212 TACAAAAAGAATCGACTATCCATTTAGTATTACGATTAAGAGGAGG 146257 | || ||||| || || |||| || || | ||| | ||||||| Sbjct 29793 TCCAGAAAGAGTCTACCCTCCACTTGGTGCTCCGACTTCGAGGAGG 29838 >seq25104 Length=148940 Score = 100 bits (110), Expect = 4e-16 Identities = 147/208 (71%), Gaps = 0/208 (0%) Strand=Plus/Plus Query 146032 TGCAAATATTCATAAAAACATTAACAGGAAAAACAATTACTATTGATGTAGAACATAACG 146091 ||||||| || | ||||| | || ||||| |||||||| | || || || | Sbjct 36077 TGCAAATCTTTGTCAAAACTCTCACTGGAAAGACAATTACCTTGGAGGTGGAGAGCTCGG 36136 Query 146092 ATACTATTCAAAATGTAAAAAATAAAATACAACTTAAAGAAGGCATTCCACCCGATCAAC 146151 |||| ||| | ||||| ||| || || || |||||||| || ||||| || |||| Sbjct 36137 ATACCATTGATAATGTGAAAGCCAAGATTCAGGACAAAGAAGGAATCCCACCAGACCAAC 36196 Query 146152 AAAGACTCATTTTTGCAGGTAAACAATTAGATGATAATAGAACGTTAACAGATTATAATA 146211 ||||| | |||||||| || |||||| | || ||| || || | | |||||||||| Sbjct 36197 AAAGATTGATTTTTGCTGGAAAACAACTTGAAGATGGAAGGACTCTTGCCGATTATAATA 36256 Query 146212 TACAAAAAGAATCGACTATCCATTTAGT 146239 | || || || || ||| ||||||| || Sbjct 36257 TCCAGAAGGAGTCTACTCTCCATTTGGT 36284 >seq12924 Length=310248 Score = 93.3 bits (102), Expect = 7e-14 Identities = 156/226 (69%), Gaps = 0/226 (0%) Strand=Plus/Plus Query 146032 TGCAAATATTCATAAAAACATTAACAGGAAAAACAATTACTATTGATGTAGAACATAACG 146091 |||| || || | ||||| | || || ||||| || || |||| || ||| || Sbjct 59355 TGCAGATCTTTGTGAAAACCCTTACTGGTAAAACCATCACCCTTGAGGTGGAAAGCTCCG 59414 Query 146092 ATACTATTCAAAATGTAAAAAATAAAATACAACTTAAAGAAGGCATTCCACCCGATCAAC 146151 |||||||| | ||||| || ||||| ||| |||||||||||||| || || |||| Sbjct 59415 ATACTATTGATAATGTCAAGGCCAAAATCCAAGACAAAGAAGGCATTCCTCCAGACCAAC 59474 Query 146152 AAAGACTCATTTTTGCAGGTAAACAATTAGATGATAATAGAACGTTAACAGATTATAATA 146211 | || || |||||||| || |||||| | || ||| |||| | | || || || | Sbjct 59475 AGAGGCTTATTTTTGCCGGAAAACAACTCGAGGATGGCCGAACTCTTGCCGACTACAACA 59534 Query 146212 TACAAAAAGAATCGACTATCCATTTAGTATTACGATTAAGAGGAGG 146257 | ||||| || || || |||| |||| | || |||| || || Sbjct 59535 TCCAAAAGGAGTCCACCCTCCACCTAGTCCTTCGTCTAAGGGGTGG 59580 Score = 93.3 bits (102), Expect = 7e-14 Identities = 138/196 (70%), Gaps = 0/196 (0%) Strand=Plus/Plus Query 146032 TGCAAATATTCATAAAAACATTAACAGGAAAAACAATTACTATTGATGTAGAACATAACG 146091 ||||||| || | || || | || ||||| || |||||| | || || || | | Sbjct 73854 TGCAAATTTTTGTGAAGACTCTTACCGGAAAGACTATTACTTTGGAAGTTGAGAGTTCTG 73913 Query 146092 ATACTATTCAAAATGTAAAAAATAAAATACAACTTAAAGAAGGCATTCCACCCGATCAAC 146151 | || ||| | ||||||||| ||| || || || ||||| |||||||| ||||| | Sbjct 73914 ACACCATTGACAATGTAAAAGCTAAGATCCAGGACAAGGAAGGGATTCCACCAGATCAGC 73973 Query 146152 AAAGACTCATTTTTGCAGGTAAACAATTAGATGATAATAGAACGTTAACAGATTATAATA 146211 | || | |||||||| || ||||| | || ||| ||| || | |||||||||||| Sbjct 73974 AGAGGTTGATTTTTGCTGGCAAACAGCTCGAAGATGGTAGGACACTTGCAGATTATAATA 74033 Query 146212 TACAAAAAGAATCGAC 146227 | || ||||| || || Sbjct 74034 TCCAGAAAGAGTCTAC 74049 >seq481 Length=542854 Score = 87.8 bits (96), Expect = 3e-12 Identities = 144/208 (69%), Gaps = 0/208 (0%) Strand=Plus/Plus Query 146032 TGCAAATATTCATAAAAACATTAACAGGAAAAACAATTACTATTGATGTAGAACATAACG 146091 ||||| | || | || || | |||||||| || ||||| | || || || | | Sbjct 258391 TGCAAGTTTTTGTGAAGACCCTCACAGGAAAGACTATTACCTTGGAAGTTGAGAGTTCTG 258450 Query 146092 ATACTATTCAAAATGTAAAAAATAAAATACAACTTAAAGAAGGCATTCCACCCGATCAAC 146151 |||| ||| | ||||| ||| ||| || || || ||||| |||||||| ||||||| Sbjct 258451 ATACGATTGACAATGTGAAAGCTAAGATCCAGGACAAGGAAGGTATTCCACCGGATCAAC 258510 Query 146152 AAAGACTCATTTTTGCAGGTAAACAATTAGATGATAATAGAACGTTAACAGATTATAATA 146211 | || || |||||||| || || || | || ||| || || | | |||||||||| Sbjct 258511 AGAGGCTGATTTTTGCTGGCAAGCAGCTGGAGGATGGGAGGACCCTTGCTGATTATAATA 258570 Query 146212 TACAAAAAGAATCGACTATCCATTTAGT 146239 | || ||||| || || |||| || || Sbjct 258571 TTCAGAAAGAGTCAACCCTCCACTTGGT 258598 >seq21576 Length=865669 Score = 84.2 bits (92), Expect = 3e-11 Identities = 147/215 (68%), Gaps = 7/215 (3%) Strand=Plus/Plus Query 146032 TGCAAATATTCATAAAAACATTAACAGGAAAAACAATTACTATTGATGTAGAACATAACG 146091 |||||||||| | || || | || |||||||||||||| | || || || | Sbjct 346320 TGCAAATATTTGTCAAGACCCTCACTGGAAAAACAATTACATTGGAAGTTGAGAGTTCAA 346379 Query 146092 ATACTATTCAAAATGTAAAAAATAAAATACAACTTAAAGAAGGCATTCCACCCG------ 146145 |||||||| | | ||| ||| | ||||| || ||||| || || || ||| Sbjct 346380 ATACTATTGATATTGTGAAAGACAAAATTCAGGAAAAAGAGGGTATCCCCCCCCCGGCCC 346439 Query 146146 -ATCAACAAAGACTCATTTTTGCAGGTAAACAATTAGATGATAATAGAACGTTAACAGAT 146204 | || ||||| | ||||||||||| ||||| | || ||| || || | | ||| Sbjct 346440 AAACAGTAAAGATTAATTTTTGCAGGAGAACAACTTGAGGATGGAAGGACTCTTGCTGAT 346499 Query 146205 TATAATATACAAAAAGAATCGACTATCCATTTAGT 146239 |||||||| |||||||| || ||| | ||||| || Sbjct 346500 TATAATATTCAAAAAGAGTCAACTCTTCATTTGGT 346534 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 785874034542920