Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Gossypium_20barbadense_20[genbank_20GCA_5F001856525.1_202016-11-03] 29,751 sequences; 2,566,742,836 total letters Query= NC_023549.1 Length=56789 Score E Sequences producing significant alignments: (Bits) Value seq28126 80.6 1e-10 seq27049 80.6 1e-10 seq26538 80.6 1e-10 seq24276 80.6 1e-10 seq24173 80.6 1e-10 seq24046 80.6 1e-10 seq22042 80.6 1e-10 seq20413 80.6 1e-10 seq20207 80.6 1e-10 seq20155 80.6 1e-10 seq19538 80.6 1e-10 seq18414 80.6 1e-10 seq17026 80.6 1e-10 seq16829 80.6 1e-10 seq16549 80.6 1e-10 seq15837 80.6 1e-10 seq11998 80.6 1e-10 seq11851 80.6 1e-10 seq7104 80.6 1e-10 seq2730 80.6 1e-10 seq726 80.6 1e-10 >seq28126 Length=906623 Score = 80.6 bits (88), Expect = 1e-10 Identities = 62/74 (84%), Gaps = 0/74 (0%) Strand=Plus/Plus Query 50110 GTTGCGGAGGCGGGATTTGAACCCGCGGCCTCCAGGATATGAGCCTGGCGAGCTACCGAA 50169 ||||||| |||||||||||||| | |||| ||| ||||||||| |||||||||| || Sbjct 48036 GTTGCGGGAACGGGATTTGAACCCATGACCTCAAGGTTATGAGCCTTGCGAGCTACCAAA 48095 Query 50170 CTGCTCTACTCCGC 50183 |||||||| |||| Sbjct 48096 CTGCTCTATCCCGC 48109 >seq27049 Length=322003 Score = 80.6 bits (88), Expect = 1e-10 Identities = 62/74 (84%), Gaps = 0/74 (0%) Strand=Plus/Minus Query 50110 GTTGCGGAGGCGGGATTTGAACCCGCGGCCTCCAGGATATGAGCCTGGCGAGCTACCGAA 50169 ||||||| |||||||||||||| | |||| ||| ||||||||| |||||||||| || Sbjct 163917 GTTGCGGGAACGGGATTTGAACCCATGACCTCAAGGTTATGAGCCTTGCGAGCTACCAAA 163858 Query 50170 CTGCTCTACTCCGC 50183 |||||||| |||| Sbjct 163857 CTGCTCTATCCCGC 163844 >seq26538 Length=1048001 Score = 80.6 bits (88), Expect = 1e-10 Identities = 62/74 (84%), Gaps = 0/74 (0%) Strand=Plus/Minus Query 50110 GTTGCGGAGGCGGGATTTGAACCCGCGGCCTCCAGGATATGAGCCTGGCGAGCTACCGAA 50169 ||||||| |||||||||||||| | |||| ||| ||||||||| |||||||||| || Sbjct 807187 GTTGCGGGAACGGGATTTGAACCCATGACCTCAAGGTTATGAGCCTTGCGAGCTACCAAA 807128 Query 50170 CTGCTCTACTCCGC 50183 |||||||| |||| Sbjct 807127 CTGCTCTATCCCGC 807114 >seq24276 Length=519654 Score = 80.6 bits (88), Expect = 1e-10 Identities = 62/74 (84%), Gaps = 0/74 (0%) Strand=Plus/Plus Query 50110 GTTGCGGAGGCGGGATTTGAACCCGCGGCCTCCAGGATATGAGCCTGGCGAGCTACCGAA 50169 ||||||| |||||||||||||| | |||| ||| ||||||||| |||||||||| || Sbjct 131450 GTTGCGGGAACGGGATTTGAACCCATGACCTCAAGGTTATGAGCCTTGCGAGCTACCAAA 131509 Query 50170 CTGCTCTACTCCGC 50183 |||||||| |||| Sbjct 131510 CTGCTCTATCCCGC 131523 >seq24173 Length=154375 Score = 80.6 bits (88), Expect = 1e-10 Identities = 62/74 (84%), Gaps = 0/74 (0%) Strand=Plus/Plus Query 50110 GTTGCGGAGGCGGGATTTGAACCCGCGGCCTCCAGGATATGAGCCTGGCGAGCTACCGAA 50169 ||||||| |||||||||||||| | |||| ||| ||||||||| |||||||||| || Sbjct 43483 GTTGCGGGAACGGGATTTGAACCCATGACCTCAAGGTTATGAGCCTTGCGAGCTACCAAA 43542 Query 50170 CTGCTCTACTCCGC 50183 |||||||| |||| Sbjct 43543 CTGCTCTATCCCGC 43556 >seq24046 Length=552354 Score = 80.6 bits (88), Expect = 1e-10 Identities = 62/74 (84%), Gaps = 0/74 (0%) Strand=Plus/Plus Query 50110 GTTGCGGAGGCGGGATTTGAACCCGCGGCCTCCAGGATATGAGCCTGGCGAGCTACCGAA 50169 ||||||| |||||||||||||| | |||| ||| ||||||||| |||||||||| || Sbjct 439709 GTTGCGGGAACGGGATTTGAACCCATGACCTCAAGGTTATGAGCCTTGCGAGCTACCAAA 439768 Query 50170 CTGCTCTACTCCGC 50183 |||||||| |||| Sbjct 439769 CTGCTCTATCCCGC 439782 >seq22042 Length=3509 Score = 80.6 bits (88), Expect = 1e-10 Identities = 62/74 (84%), Gaps = 0/74 (0%) Strand=Plus/Plus Query 50110 GTTGCGGAGGCGGGATTTGAACCCGCGGCCTCCAGGATATGAGCCTGGCGAGCTACCGAA 50169 ||||||| |||||||||||||| | |||| ||| ||||||||| |||||||||| || Sbjct 907 GTTGCGGGAACGGGATTTGAACCCATGACCTCAAGGTTATGAGCCTTGCGAGCTACCAAA 966 Query 50170 CTGCTCTACTCCGC 50183 |||||||| |||| Sbjct 967 CTGCTCTATCCCGC 980 >seq20413 Length=137073 Score = 80.6 bits (88), Expect = 1e-10 Identities = 62/74 (84%), Gaps = 0/74 (0%) Strand=Plus/Minus Query 50110 GTTGCGGAGGCGGGATTTGAACCCGCGGCCTCCAGGATATGAGCCTGGCGAGCTACCGAA 50169 ||||||| |||||||||||||| | |||| ||| ||||||||| |||||||||| || Sbjct 9573 GTTGCGGGAACGGGATTTGAACCCATGACCTCAAGGTTATGAGCCTTGCGAGCTACCAAA 9514 Query 50170 CTGCTCTACTCCGC 50183 |||||||| |||| Sbjct 9513 CTGCTCTATCCCGC 9500 >seq20207 Length=15142 Score = 80.6 bits (88), Expect = 1e-10 Identities = 62/74 (84%), Gaps = 0/74 (0%) Strand=Plus/Minus Query 50110 GTTGCGGAGGCGGGATTTGAACCCGCGGCCTCCAGGATATGAGCCTGGCGAGCTACCGAA 50169 ||||||| |||||||||||||| | |||| ||| ||||||||| |||||||||| || Sbjct 2888 GTTGCGGGAACGGGATTTGAACCCATGACCTCAAGGTTATGAGCCTTGCGAGCTACCAAA 2829 Query 50170 CTGCTCTACTCCGC 50183 |||||||| |||| Sbjct 2828 CTGCTCTATCCCGC 2815 >seq20155 Length=649718 Score = 80.6 bits (88), Expect = 1e-10 Identities = 62/74 (84%), Gaps = 0/74 (0%) Strand=Plus/Plus Query 50110 GTTGCGGAGGCGGGATTTGAACCCGCGGCCTCCAGGATATGAGCCTGGCGAGCTACCGAA 50169 ||||||| |||||||||||||| | |||| ||| ||||||||| |||||||||| || Sbjct 113313 GTTGCGGGAACGGGATTTGAACCCATGACCTCAAGGTTATGAGCCTTGCGAGCTACCAAA 113372 Query 50170 CTGCTCTACTCCGC 50183 |||||||| |||| Sbjct 113373 CTGCTCTATCCCGC 113386 >seq19538 Length=341288 Score = 80.6 bits (88), Expect = 1e-10 Identities = 62/74 (84%), Gaps = 0/74 (0%) Strand=Plus/Plus Query 50110 GTTGCGGAGGCGGGATTTGAACCCGCGGCCTCCAGGATATGAGCCTGGCGAGCTACCGAA 50169 ||||||| |||||||||||||| | |||| ||| ||||||||| |||||||||| || Sbjct 193452 GTTGCGGGAACGGGATTTGAACCCATGACCTCAAGGTTATGAGCCTTGCGAGCTACCAAA 193511 Query 50170 CTGCTCTACTCCGC 50183 |||||||| |||| Sbjct 193512 CTGCTCTATCCCGC 193525 >seq18414 Length=9769 Score = 80.6 bits (88), Expect = 1e-10 Identities = 62/74 (84%), Gaps = 0/74 (0%) Strand=Plus/Plus Query 50110 GTTGCGGAGGCGGGATTTGAACCCGCGGCCTCCAGGATATGAGCCTGGCGAGCTACCGAA 50169 ||||||| |||||||||||||| | |||| ||| ||||||||| |||||||||| || Sbjct 4135 GTTGCGGGAACGGGATTTGAACCCATGACCTCAAGGTTATGAGCCTTGCGAGCTACCAAA 4194 Query 50170 CTGCTCTACTCCGC 50183 |||||||| |||| Sbjct 4195 CTGCTCTATCCCGC 4208 >seq17026 Length=9621 Score = 80.6 bits (88), Expect = 1e-10 Identities = 62/74 (84%), Gaps = 0/74 (0%) Strand=Plus/Plus Query 50110 GTTGCGGAGGCGGGATTTGAACCCGCGGCCTCCAGGATATGAGCCTGGCGAGCTACCGAA 50169 ||||||| |||||||||||||| | |||| ||| ||||||||| |||||||||| || Sbjct 3807 GTTGCGGGAACGGGATTTGAACCCATGACCTCAAGGTTATGAGCCTTGCGAGCTACCAAA 3866 Query 50170 CTGCTCTACTCCGC 50183 |||||||| |||| Sbjct 3867 CTGCTCTATCCCGC 3880 >seq16829 Length=228052 Score = 80.6 bits (88), Expect = 1e-10 Identities = 62/74 (84%), Gaps = 0/74 (0%) Strand=Plus/Minus Query 50110 GTTGCGGAGGCGGGATTTGAACCCGCGGCCTCCAGGATATGAGCCTGGCGAGCTACCGAA 50169 ||||||| |||||||||||||| | |||| ||| ||||||||| |||||||||| || Sbjct 148318 GTTGCGGGAACGGGATTTGAACCCATGACCTCAAGGTTATGAGCCTTGCGAGCTACCAAA 148259 Query 50170 CTGCTCTACTCCGC 50183 |||||||| |||| Sbjct 148258 CTGCTCTATCCCGC 148245 >seq16549 Length=539039 Score = 80.6 bits (88), Expect = 1e-10 Identities = 62/74 (84%), Gaps = 0/74 (0%) Strand=Plus/Plus Query 50110 GTTGCGGAGGCGGGATTTGAACCCGCGGCCTCCAGGATATGAGCCTGGCGAGCTACCGAA 50169 ||||||| |||||||||||||| | |||| ||| ||||||||| |||||||||| || Sbjct 76724 GTTGCGGGAACGGGATTTGAACCCATGACCTCAAGGTTATGAGCCTTGCGAGCTACCAAA 76783 Query 50170 CTGCTCTACTCCGC 50183 |||||||| |||| Sbjct 76784 CTGCTCTATCCCGC 76797 >seq15837 Length=133161 Score = 80.6 bits (88), Expect = 1e-10 Identities = 62/74 (84%), Gaps = 0/74 (0%) Strand=Plus/Minus Query 50110 GTTGCGGAGGCGGGATTTGAACCCGCGGCCTCCAGGATATGAGCCTGGCGAGCTACCGAA 50169 ||||||| |||||||||||||| | |||| ||| ||||||||| |||||||||| || Sbjct 94477 GTTGCGGGAACGGGATTTGAACCCATGACCTCAAGGTTATGAGCCTTGCGAGCTACCAAA 94418 Query 50170 CTGCTCTACTCCGC 50183 |||||||| |||| Sbjct 94417 CTGCTCTATCCCGC 94404 >seq11998 Length=845859 Score = 80.6 bits (88), Expect = 1e-10 Identities = 62/74 (84%), Gaps = 0/74 (0%) Strand=Plus/Plus Query 50110 GTTGCGGAGGCGGGATTTGAACCCGCGGCCTCCAGGATATGAGCCTGGCGAGCTACCGAA 50169 ||||||| |||||||||||||| | |||| ||| ||||||||| |||||||||| || Sbjct 395126 GTTGCGGGAACGGGATTTGAACCCATGACCTCAAGGTTATGAGCCTTGCGAGCTACCAAA 395185 Query 50170 CTGCTCTACTCCGC 50183 |||||||| |||| Sbjct 395186 CTGCTCTATCCCGC 395199 >seq11851 Length=305145 Score = 80.6 bits (88), Expect = 1e-10 Identities = 62/74 (84%), Gaps = 0/74 (0%) Strand=Plus/Minus Query 50110 GTTGCGGAGGCGGGATTTGAACCCGCGGCCTCCAGGATATGAGCCTGGCGAGCTACCGAA 50169 ||||||| |||||||||||||| | |||| ||| ||||||||| |||||||||| || Sbjct 30829 GTTGCGGGAACGGGATTTGAACCCATGACCTCAAGGTTATGAGCCTTGCGAGCTACCAAA 30770 Query 50170 CTGCTCTACTCCGC 50183 |||||||| |||| Sbjct 30769 CTGCTCTATCCCGC 30756 >seq7104 Length=334309 Score = 80.6 bits (88), Expect = 1e-10 Identities = 62/74 (84%), Gaps = 0/74 (0%) Strand=Plus/Minus Query 50110 GTTGCGGAGGCGGGATTTGAACCCGCGGCCTCCAGGATATGAGCCTGGCGAGCTACCGAA 50169 ||||||| |||||||||||||| | |||| ||| ||||||||| |||||||||| || Sbjct 84623 GTTGCGGGAACGGGATTTGAACCCATGACCTCAAGGTTATGAGCCTTGCGAGCTACCAAA 84564 Query 50170 CTGCTCTACTCCGC 50183 |||||||| |||| Sbjct 84563 CTGCTCTATCCCGC 84550 >seq2730 Length=19162 Score = 80.6 bits (88), Expect = 1e-10 Identities = 62/74 (84%), Gaps = 0/74 (0%) Strand=Plus/Minus Query 50110 GTTGCGGAGGCGGGATTTGAACCCGCGGCCTCCAGGATATGAGCCTGGCGAGCTACCGAA 50169 ||||||| |||||||||||||| | |||| ||| ||||||||| |||||||||| || Sbjct 8361 GTTGCGGGAACGGGATTTGAACCCATGACCTCAAGGTTATGAGCCTTGCGAGCTACCAAA 8302 Query 50170 CTGCTCTACTCCGC 50183 |||||||| |||| Sbjct 8301 CTGCTCTATCCCGC 8288 >seq726 Length=119937 Score = 80.6 bits (88), Expect = 1e-10 Identities = 62/74 (84%), Gaps = 0/74 (0%) Strand=Plus/Minus Query 50110 GTTGCGGAGGCGGGATTTGAACCCGCGGCCTCCAGGATATGAGCCTGGCGAGCTACCGAA 50169 ||||||| |||||||||||||| | |||| ||| ||||||||| |||||||||| || Sbjct 103363 GTTGCGGGAACGGGATTTGAACCCATGACCTCAAGGTTATGAGCCTTGCGAGCTACCAAA 103304 Query 50170 CTGCTCTACTCCGC 50183 |||||||| |||| Sbjct 103303 CTGCTCTATCCCGC 103290 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 181539040837962