Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Gossypium_20barbadense_20[genbank_20GCA_5F001856525.1_202016-11-03]
29,751 sequences; 2,566,742,836 total letters
Query= NC_023549.1
Length=56789
Score E
Sequences producing significant alignments: (Bits) Value
seq28126 80.6 1e-10
seq27049 80.6 1e-10
seq26538 80.6 1e-10
seq24276 80.6 1e-10
seq24173 80.6 1e-10
seq24046 80.6 1e-10
seq22042 80.6 1e-10
seq20413 80.6 1e-10
seq20207 80.6 1e-10
seq20155 80.6 1e-10
seq19538 80.6 1e-10
seq18414 80.6 1e-10
seq17026 80.6 1e-10
seq16829 80.6 1e-10
seq16549 80.6 1e-10
seq15837 80.6 1e-10
seq11998 80.6 1e-10
seq11851 80.6 1e-10
seq7104 80.6 1e-10
seq2730 80.6 1e-10
seq726 80.6 1e-10
>seq28126
Length=906623
Score = 80.6 bits (88), Expect = 1e-10
Identities = 62/74 (84%), Gaps = 0/74 (0%)
Strand=Plus/Plus
Query 50110 GTTGCGGAGGCGGGATTTGAACCCGCGGCCTCCAGGATATGAGCCTGGCGAGCTACCGAA 50169
||||||| |||||||||||||| | |||| ||| ||||||||| |||||||||| ||
Sbjct 48036 GTTGCGGGAACGGGATTTGAACCCATGACCTCAAGGTTATGAGCCTTGCGAGCTACCAAA 48095
Query 50170 CTGCTCTACTCCGC 50183
|||||||| ||||
Sbjct 48096 CTGCTCTATCCCGC 48109
>seq27049
Length=322003
Score = 80.6 bits (88), Expect = 1e-10
Identities = 62/74 (84%), Gaps = 0/74 (0%)
Strand=Plus/Minus
Query 50110 GTTGCGGAGGCGGGATTTGAACCCGCGGCCTCCAGGATATGAGCCTGGCGAGCTACCGAA 50169
||||||| |||||||||||||| | |||| ||| ||||||||| |||||||||| ||
Sbjct 163917 GTTGCGGGAACGGGATTTGAACCCATGACCTCAAGGTTATGAGCCTTGCGAGCTACCAAA 163858
Query 50170 CTGCTCTACTCCGC 50183
|||||||| ||||
Sbjct 163857 CTGCTCTATCCCGC 163844
>seq26538
Length=1048001
Score = 80.6 bits (88), Expect = 1e-10
Identities = 62/74 (84%), Gaps = 0/74 (0%)
Strand=Plus/Minus
Query 50110 GTTGCGGAGGCGGGATTTGAACCCGCGGCCTCCAGGATATGAGCCTGGCGAGCTACCGAA 50169
||||||| |||||||||||||| | |||| ||| ||||||||| |||||||||| ||
Sbjct 807187 GTTGCGGGAACGGGATTTGAACCCATGACCTCAAGGTTATGAGCCTTGCGAGCTACCAAA 807128
Query 50170 CTGCTCTACTCCGC 50183
|||||||| ||||
Sbjct 807127 CTGCTCTATCCCGC 807114
>seq24276
Length=519654
Score = 80.6 bits (88), Expect = 1e-10
Identities = 62/74 (84%), Gaps = 0/74 (0%)
Strand=Plus/Plus
Query 50110 GTTGCGGAGGCGGGATTTGAACCCGCGGCCTCCAGGATATGAGCCTGGCGAGCTACCGAA 50169
||||||| |||||||||||||| | |||| ||| ||||||||| |||||||||| ||
Sbjct 131450 GTTGCGGGAACGGGATTTGAACCCATGACCTCAAGGTTATGAGCCTTGCGAGCTACCAAA 131509
Query 50170 CTGCTCTACTCCGC 50183
|||||||| ||||
Sbjct 131510 CTGCTCTATCCCGC 131523
>seq24173
Length=154375
Score = 80.6 bits (88), Expect = 1e-10
Identities = 62/74 (84%), Gaps = 0/74 (0%)
Strand=Plus/Plus
Query 50110 GTTGCGGAGGCGGGATTTGAACCCGCGGCCTCCAGGATATGAGCCTGGCGAGCTACCGAA 50169
||||||| |||||||||||||| | |||| ||| ||||||||| |||||||||| ||
Sbjct 43483 GTTGCGGGAACGGGATTTGAACCCATGACCTCAAGGTTATGAGCCTTGCGAGCTACCAAA 43542
Query 50170 CTGCTCTACTCCGC 50183
|||||||| ||||
Sbjct 43543 CTGCTCTATCCCGC 43556
>seq24046
Length=552354
Score = 80.6 bits (88), Expect = 1e-10
Identities = 62/74 (84%), Gaps = 0/74 (0%)
Strand=Plus/Plus
Query 50110 GTTGCGGAGGCGGGATTTGAACCCGCGGCCTCCAGGATATGAGCCTGGCGAGCTACCGAA 50169
||||||| |||||||||||||| | |||| ||| ||||||||| |||||||||| ||
Sbjct 439709 GTTGCGGGAACGGGATTTGAACCCATGACCTCAAGGTTATGAGCCTTGCGAGCTACCAAA 439768
Query 50170 CTGCTCTACTCCGC 50183
|||||||| ||||
Sbjct 439769 CTGCTCTATCCCGC 439782
>seq22042
Length=3509
Score = 80.6 bits (88), Expect = 1e-10
Identities = 62/74 (84%), Gaps = 0/74 (0%)
Strand=Plus/Plus
Query 50110 GTTGCGGAGGCGGGATTTGAACCCGCGGCCTCCAGGATATGAGCCTGGCGAGCTACCGAA 50169
||||||| |||||||||||||| | |||| ||| ||||||||| |||||||||| ||
Sbjct 907 GTTGCGGGAACGGGATTTGAACCCATGACCTCAAGGTTATGAGCCTTGCGAGCTACCAAA 966
Query 50170 CTGCTCTACTCCGC 50183
|||||||| ||||
Sbjct 967 CTGCTCTATCCCGC 980
>seq20413
Length=137073
Score = 80.6 bits (88), Expect = 1e-10
Identities = 62/74 (84%), Gaps = 0/74 (0%)
Strand=Plus/Minus
Query 50110 GTTGCGGAGGCGGGATTTGAACCCGCGGCCTCCAGGATATGAGCCTGGCGAGCTACCGAA 50169
||||||| |||||||||||||| | |||| ||| ||||||||| |||||||||| ||
Sbjct 9573 GTTGCGGGAACGGGATTTGAACCCATGACCTCAAGGTTATGAGCCTTGCGAGCTACCAAA 9514
Query 50170 CTGCTCTACTCCGC 50183
|||||||| ||||
Sbjct 9513 CTGCTCTATCCCGC 9500
>seq20207
Length=15142
Score = 80.6 bits (88), Expect = 1e-10
Identities = 62/74 (84%), Gaps = 0/74 (0%)
Strand=Plus/Minus
Query 50110 GTTGCGGAGGCGGGATTTGAACCCGCGGCCTCCAGGATATGAGCCTGGCGAGCTACCGAA 50169
||||||| |||||||||||||| | |||| ||| ||||||||| |||||||||| ||
Sbjct 2888 GTTGCGGGAACGGGATTTGAACCCATGACCTCAAGGTTATGAGCCTTGCGAGCTACCAAA 2829
Query 50170 CTGCTCTACTCCGC 50183
|||||||| ||||
Sbjct 2828 CTGCTCTATCCCGC 2815
>seq20155
Length=649718
Score = 80.6 bits (88), Expect = 1e-10
Identities = 62/74 (84%), Gaps = 0/74 (0%)
Strand=Plus/Plus
Query 50110 GTTGCGGAGGCGGGATTTGAACCCGCGGCCTCCAGGATATGAGCCTGGCGAGCTACCGAA 50169
||||||| |||||||||||||| | |||| ||| ||||||||| |||||||||| ||
Sbjct 113313 GTTGCGGGAACGGGATTTGAACCCATGACCTCAAGGTTATGAGCCTTGCGAGCTACCAAA 113372
Query 50170 CTGCTCTACTCCGC 50183
|||||||| ||||
Sbjct 113373 CTGCTCTATCCCGC 113386
>seq19538
Length=341288
Score = 80.6 bits (88), Expect = 1e-10
Identities = 62/74 (84%), Gaps = 0/74 (0%)
Strand=Plus/Plus
Query 50110 GTTGCGGAGGCGGGATTTGAACCCGCGGCCTCCAGGATATGAGCCTGGCGAGCTACCGAA 50169
||||||| |||||||||||||| | |||| ||| ||||||||| |||||||||| ||
Sbjct 193452 GTTGCGGGAACGGGATTTGAACCCATGACCTCAAGGTTATGAGCCTTGCGAGCTACCAAA 193511
Query 50170 CTGCTCTACTCCGC 50183
|||||||| ||||
Sbjct 193512 CTGCTCTATCCCGC 193525
>seq18414
Length=9769
Score = 80.6 bits (88), Expect = 1e-10
Identities = 62/74 (84%), Gaps = 0/74 (0%)
Strand=Plus/Plus
Query 50110 GTTGCGGAGGCGGGATTTGAACCCGCGGCCTCCAGGATATGAGCCTGGCGAGCTACCGAA 50169
||||||| |||||||||||||| | |||| ||| ||||||||| |||||||||| ||
Sbjct 4135 GTTGCGGGAACGGGATTTGAACCCATGACCTCAAGGTTATGAGCCTTGCGAGCTACCAAA 4194
Query 50170 CTGCTCTACTCCGC 50183
|||||||| ||||
Sbjct 4195 CTGCTCTATCCCGC 4208
>seq17026
Length=9621
Score = 80.6 bits (88), Expect = 1e-10
Identities = 62/74 (84%), Gaps = 0/74 (0%)
Strand=Plus/Plus
Query 50110 GTTGCGGAGGCGGGATTTGAACCCGCGGCCTCCAGGATATGAGCCTGGCGAGCTACCGAA 50169
||||||| |||||||||||||| | |||| ||| ||||||||| |||||||||| ||
Sbjct 3807 GTTGCGGGAACGGGATTTGAACCCATGACCTCAAGGTTATGAGCCTTGCGAGCTACCAAA 3866
Query 50170 CTGCTCTACTCCGC 50183
|||||||| ||||
Sbjct 3867 CTGCTCTATCCCGC 3880
>seq16829
Length=228052
Score = 80.6 bits (88), Expect = 1e-10
Identities = 62/74 (84%), Gaps = 0/74 (0%)
Strand=Plus/Minus
Query 50110 GTTGCGGAGGCGGGATTTGAACCCGCGGCCTCCAGGATATGAGCCTGGCGAGCTACCGAA 50169
||||||| |||||||||||||| | |||| ||| ||||||||| |||||||||| ||
Sbjct 148318 GTTGCGGGAACGGGATTTGAACCCATGACCTCAAGGTTATGAGCCTTGCGAGCTACCAAA 148259
Query 50170 CTGCTCTACTCCGC 50183
|||||||| ||||
Sbjct 148258 CTGCTCTATCCCGC 148245
>seq16549
Length=539039
Score = 80.6 bits (88), Expect = 1e-10
Identities = 62/74 (84%), Gaps = 0/74 (0%)
Strand=Plus/Plus
Query 50110 GTTGCGGAGGCGGGATTTGAACCCGCGGCCTCCAGGATATGAGCCTGGCGAGCTACCGAA 50169
||||||| |||||||||||||| | |||| ||| ||||||||| |||||||||| ||
Sbjct 76724 GTTGCGGGAACGGGATTTGAACCCATGACCTCAAGGTTATGAGCCTTGCGAGCTACCAAA 76783
Query 50170 CTGCTCTACTCCGC 50183
|||||||| ||||
Sbjct 76784 CTGCTCTATCCCGC 76797
>seq15837
Length=133161
Score = 80.6 bits (88), Expect = 1e-10
Identities = 62/74 (84%), Gaps = 0/74 (0%)
Strand=Plus/Minus
Query 50110 GTTGCGGAGGCGGGATTTGAACCCGCGGCCTCCAGGATATGAGCCTGGCGAGCTACCGAA 50169
||||||| |||||||||||||| | |||| ||| ||||||||| |||||||||| ||
Sbjct 94477 GTTGCGGGAACGGGATTTGAACCCATGACCTCAAGGTTATGAGCCTTGCGAGCTACCAAA 94418
Query 50170 CTGCTCTACTCCGC 50183
|||||||| ||||
Sbjct 94417 CTGCTCTATCCCGC 94404
>seq11998
Length=845859
Score = 80.6 bits (88), Expect = 1e-10
Identities = 62/74 (84%), Gaps = 0/74 (0%)
Strand=Plus/Plus
Query 50110 GTTGCGGAGGCGGGATTTGAACCCGCGGCCTCCAGGATATGAGCCTGGCGAGCTACCGAA 50169
||||||| |||||||||||||| | |||| ||| ||||||||| |||||||||| ||
Sbjct 395126 GTTGCGGGAACGGGATTTGAACCCATGACCTCAAGGTTATGAGCCTTGCGAGCTACCAAA 395185
Query 50170 CTGCTCTACTCCGC 50183
|||||||| ||||
Sbjct 395186 CTGCTCTATCCCGC 395199
>seq11851
Length=305145
Score = 80.6 bits (88), Expect = 1e-10
Identities = 62/74 (84%), Gaps = 0/74 (0%)
Strand=Plus/Minus
Query 50110 GTTGCGGAGGCGGGATTTGAACCCGCGGCCTCCAGGATATGAGCCTGGCGAGCTACCGAA 50169
||||||| |||||||||||||| | |||| ||| ||||||||| |||||||||| ||
Sbjct 30829 GTTGCGGGAACGGGATTTGAACCCATGACCTCAAGGTTATGAGCCTTGCGAGCTACCAAA 30770
Query 50170 CTGCTCTACTCCGC 50183
|||||||| ||||
Sbjct 30769 CTGCTCTATCCCGC 30756
>seq7104
Length=334309
Score = 80.6 bits (88), Expect = 1e-10
Identities = 62/74 (84%), Gaps = 0/74 (0%)
Strand=Plus/Minus
Query 50110 GTTGCGGAGGCGGGATTTGAACCCGCGGCCTCCAGGATATGAGCCTGGCGAGCTACCGAA 50169
||||||| |||||||||||||| | |||| ||| ||||||||| |||||||||| ||
Sbjct 84623 GTTGCGGGAACGGGATTTGAACCCATGACCTCAAGGTTATGAGCCTTGCGAGCTACCAAA 84564
Query 50170 CTGCTCTACTCCGC 50183
|||||||| ||||
Sbjct 84563 CTGCTCTATCCCGC 84550
>seq2730
Length=19162
Score = 80.6 bits (88), Expect = 1e-10
Identities = 62/74 (84%), Gaps = 0/74 (0%)
Strand=Plus/Minus
Query 50110 GTTGCGGAGGCGGGATTTGAACCCGCGGCCTCCAGGATATGAGCCTGGCGAGCTACCGAA 50169
||||||| |||||||||||||| | |||| ||| ||||||||| |||||||||| ||
Sbjct 8361 GTTGCGGGAACGGGATTTGAACCCATGACCTCAAGGTTATGAGCCTTGCGAGCTACCAAA 8302
Query 50170 CTGCTCTACTCCGC 50183
|||||||| ||||
Sbjct 8301 CTGCTCTATCCCGC 8288
>seq726
Length=119937
Score = 80.6 bits (88), Expect = 1e-10
Identities = 62/74 (84%), Gaps = 0/74 (0%)
Strand=Plus/Minus
Query 50110 GTTGCGGAGGCGGGATTTGAACCCGCGGCCTCCAGGATATGAGCCTGGCGAGCTACCGAA 50169
||||||| |||||||||||||| | |||| ||| ||||||||| |||||||||| ||
Sbjct 103363 GTTGCGGGAACGGGATTTGAACCCATGACCTCAAGGTTATGAGCCTTGCGAGCTACCAAA 103304
Query 50170 CTGCTCTACTCCGC 50183
|||||||| ||||
Sbjct 103303 CTGCTCTATCCCGC 103290
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 181539040837962
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |