Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Gossypium_20barbadense_20[genbank_20GCA_5F001856525.1_202016-11-03] 29,751 sequences; 2,566,742,836 total letters Query= NC_023611.1 Length=198533 Score E Sequences producing significant alignments: (Bits) Value seq769 87.8 2e-12 seq23373 84.2 3e-11 seq13740 84.2 3e-11 seq4768 84.2 3e-11 >seq769 Length=114990 Score = 87.8 bits (96), Expect = 2e-12 Identities = 65/76 (86%), Gaps = 0/76 (0%) Strand=Plus/Plus Query 51969 AATTTGGCTATGACTAAAGCATATAATGCTGATTTTGATGGGGATGAAATGAATTTACAT 52028 |||||| || | ||| | |||| ||||||||||||||||| |||||||||||| | ||| Sbjct 34952 AATTTGTCTGTTACTTCACCATACAATGCTGATTTTGATGGTGATGAAATGAATATGCAT 35011 Query 52029 GTTCCTCAATCATATG 52044 ||||||||||||| || Sbjct 35012 GTTCCTCAATCATTTG 35027 >seq23373 Length=148749 Score = 84.2 bits (92), Expect = 3e-11 Identities = 64/76 (84%), Gaps = 0/76 (0%) Strand=Plus/Plus Query 51969 AATTTGGCTATGACTAAAGCATATAATGCTGATTTTGATGGGGATGAAATGAATTTACAT 52028 |||||| || | ||| | |||| |||||||||||||| || |||||||||||| | ||| Sbjct 115177 AATTTGTCTGTTACTTCACCATACAATGCTGATTTTGACGGTGATGAAATGAATATGCAT 115236 Query 52029 GTTCCTCAATCATATG 52044 ||||||||||||| || Sbjct 115237 GTTCCTCAATCATTTG 115252 >seq13740 Length=294985 Score = 84.2 bits (92), Expect = 3e-11 Identities = 64/76 (84%), Gaps = 0/76 (0%) Strand=Plus/Minus Query 51969 AATTTGGCTATGACTAAAGCATATAATGCTGATTTTGATGGGGATGAAATGAATTTACAT 52028 |||||| | | ||| | |||| ||||||||||||||||| |||||||||||| | ||| Sbjct 225900 AATTTGTCAGTTACTTCACCATACAATGCTGATTTTGATGGTGATGAAATGAATATGCAT 225841 Query 52029 GTTCCTCAATCATATG 52044 ||||||||||||| || Sbjct 225840 GTTCCTCAATCATTTG 225825 >seq4768 Length=592675 Score = 84.2 bits (92), Expect = 3e-11 Identities = 64/76 (84%), Gaps = 0/76 (0%) Strand=Plus/Plus Query 51969 AATTTGGCTATGACTAAAGCATATAATGCTGATTTTGATGGGGATGAAATGAATTTACAT 52028 |||||| | | ||| | |||| ||||||||||||||||| |||||||||||| | ||| Sbjct 49453 AATTTGTCAGTTACTTCACCATACAATGCTGATTTTGATGGTGATGAAATGAATATGCAT 49512 Query 52029 GTTCCTCAATCATATG 52044 ||||||||||||| || Sbjct 49513 GTTCCTCAATCATTTG 49528 Score = 84.2 bits (92), Expect = 3e-11 Identities = 64/76 (84%), Gaps = 0/76 (0%) Strand=Plus/Plus Query 51969 AATTTGGCTATGACTAAAGCATATAATGCTGATTTTGATGGGGATGAAATGAATTTACAT 52028 |||||| | | ||| | |||| ||||||||||||||||| |||||||||||| | ||| Sbjct 52103 AATTTGTCAGTTACTTCACCATACAATGCTGATTTTGATGGTGATGAAATGAATATGCAT 52162 Query 52029 GTTCCTCAATCATATG 52044 ||||||||||||| || Sbjct 52163 GTTCCTCAATCATTTG 52178 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 634941385390280