Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Gossypium_20barbadense_20[genbank_20GCA_5F001856525.1_202016-11-03]
29,751 sequences; 2,566,742,836 total letters
Query= NC_023611.1
Length=198533
Score E
Sequences producing significant alignments: (Bits) Value
seq769 87.8 2e-12
seq23373 84.2 3e-11
seq13740 84.2 3e-11
seq4768 84.2 3e-11
>seq769
Length=114990
Score = 87.8 bits (96), Expect = 2e-12
Identities = 65/76 (86%), Gaps = 0/76 (0%)
Strand=Plus/Plus
Query 51969 AATTTGGCTATGACTAAAGCATATAATGCTGATTTTGATGGGGATGAAATGAATTTACAT 52028
|||||| || | ||| | |||| ||||||||||||||||| |||||||||||| | |||
Sbjct 34952 AATTTGTCTGTTACTTCACCATACAATGCTGATTTTGATGGTGATGAAATGAATATGCAT 35011
Query 52029 GTTCCTCAATCATATG 52044
||||||||||||| ||
Sbjct 35012 GTTCCTCAATCATTTG 35027
>seq23373
Length=148749
Score = 84.2 bits (92), Expect = 3e-11
Identities = 64/76 (84%), Gaps = 0/76 (0%)
Strand=Plus/Plus
Query 51969 AATTTGGCTATGACTAAAGCATATAATGCTGATTTTGATGGGGATGAAATGAATTTACAT 52028
|||||| || | ||| | |||| |||||||||||||| || |||||||||||| | |||
Sbjct 115177 AATTTGTCTGTTACTTCACCATACAATGCTGATTTTGACGGTGATGAAATGAATATGCAT 115236
Query 52029 GTTCCTCAATCATATG 52044
||||||||||||| ||
Sbjct 115237 GTTCCTCAATCATTTG 115252
>seq13740
Length=294985
Score = 84.2 bits (92), Expect = 3e-11
Identities = 64/76 (84%), Gaps = 0/76 (0%)
Strand=Plus/Minus
Query 51969 AATTTGGCTATGACTAAAGCATATAATGCTGATTTTGATGGGGATGAAATGAATTTACAT 52028
|||||| | | ||| | |||| ||||||||||||||||| |||||||||||| | |||
Sbjct 225900 AATTTGTCAGTTACTTCACCATACAATGCTGATTTTGATGGTGATGAAATGAATATGCAT 225841
Query 52029 GTTCCTCAATCATATG 52044
||||||||||||| ||
Sbjct 225840 GTTCCTCAATCATTTG 225825
>seq4768
Length=592675
Score = 84.2 bits (92), Expect = 3e-11
Identities = 64/76 (84%), Gaps = 0/76 (0%)
Strand=Plus/Plus
Query 51969 AATTTGGCTATGACTAAAGCATATAATGCTGATTTTGATGGGGATGAAATGAATTTACAT 52028
|||||| | | ||| | |||| ||||||||||||||||| |||||||||||| | |||
Sbjct 49453 AATTTGTCAGTTACTTCACCATACAATGCTGATTTTGATGGTGATGAAATGAATATGCAT 49512
Query 52029 GTTCCTCAATCATATG 52044
||||||||||||| ||
Sbjct 49513 GTTCCTCAATCATTTG 49528
Score = 84.2 bits (92), Expect = 3e-11
Identities = 64/76 (84%), Gaps = 0/76 (0%)
Strand=Plus/Plus
Query 51969 AATTTGGCTATGACTAAAGCATATAATGCTGATTTTGATGGGGATGAAATGAATTTACAT 52028
|||||| | | ||| | |||| ||||||||||||||||| |||||||||||| | |||
Sbjct 52103 AATTTGTCAGTTACTTCACCATACAATGCTGATTTTGATGGTGATGAAATGAATATGCAT 52162
Query 52029 GTTCCTCAATCATATG 52044
||||||||||||| ||
Sbjct 52163 GTTCCTCAATCATTTG 52178
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 634941385390280
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |