Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Gossypium_20barbadense_20[genbank_20GCA_5F001856525.1_202016-11-03]
29,751 sequences; 2,566,742,836 total letters
Query= NC_024447.1
Length=282356
Score E
Sequences producing significant alignments: (Bits) Value
seq14353 91.5 3e-13
seq481 87.8 3e-12
>seq14353
Length=57137
Score = 91.5 bits (100), Expect = 3e-13
Identities = 103/140 (74%), Gaps = 11/140 (8%)
Strand=Plus/Minus
Query 81643 CAGAGTAAATTCCTTCTGTATATTATAATCAGATAGAGTTCTACAGTCTTCTAAC----- 81697
||||||| | |||||||| ||||| || |||| |||||||| || ||| || |||
Sbjct 55307 CAGAGTAGACTCCTTCTGGATATTGTAGTCAGCTAGAGTTCGACCGTCCTCCAACTGCTT 55248
Query 81698 ------AAAGATTAGTCTTTGTTGACCTGGAAGTATTTCTTCCTTATCTTGAATCTTTGC 81751
|||||| | || || ||| | || | ||| | ||||| || |||||||||||
Sbjct 55247 CCCAGCAAAGATCAACCTCTGCTGATCCGGGGGAATTCCCTCCTTGTCCTGAATCTTTGC 55188
Query 81752 TTTTATATTTTCAATCGTAT 81771
||||| ||| ||||||||||
Sbjct 55187 TTTTACATTGTCAATCGTAT 55168
>seq481
Length=542854
Score = 87.8 bits (96), Expect = 3e-12
Identities = 102/140 (73%), Gaps = 11/140 (8%)
Strand=Plus/Minus
Query 81643 CAGAGTAAATTCCTTCTGTATATTATAATCAGATAGAGTTCTACAGTCTTCTAAC----- 81697
||||||| | |||||||| ||||| || |||| ||| |||| || ||| || |||
Sbjct 259046 CAGAGTAGACTCCTTCTGGATATTGTAGTCAGCTAGGGTTCGACCGTCCTCCAACTGCTT 258987
Query 81698 ------AAAGATTAGTCTTTGTTGACCTGGAAGTATTTCTTCCTTATCTTGAATCTTTGC 81751
|||||| | || || ||| | || | ||| | ||||| || |||||||||||
Sbjct 258986 CCCAGCAAAGATCAACCTCTGCTGATCCGGGGGAATTCCCTCCTTGTCCTGAATCTTTGC 258927
Query 81752 TTTTATATTTTCAATCGTAT 81771
||||| ||| ||||||||||
Sbjct 258926 TTTTACATTGTCAATCGTAT 258907
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 903075232667360
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |