Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Gossypium_20barbadense_20[genbank_20GCA_5F001856525.1_202016-11-03] 29,751 sequences; 2,566,742,836 total letters Query= NC_024447.1 Length=282356 Score E Sequences producing significant alignments: (Bits) Value seq14353 91.5 3e-13 seq481 87.8 3e-12 >seq14353 Length=57137 Score = 91.5 bits (100), Expect = 3e-13 Identities = 103/140 (74%), Gaps = 11/140 (8%) Strand=Plus/Minus Query 81643 CAGAGTAAATTCCTTCTGTATATTATAATCAGATAGAGTTCTACAGTCTTCTAAC----- 81697 ||||||| | |||||||| ||||| || |||| |||||||| || ||| || ||| Sbjct 55307 CAGAGTAGACTCCTTCTGGATATTGTAGTCAGCTAGAGTTCGACCGTCCTCCAACTGCTT 55248 Query 81698 ------AAAGATTAGTCTTTGTTGACCTGGAAGTATTTCTTCCTTATCTTGAATCTTTGC 81751 |||||| | || || ||| | || | ||| | ||||| || ||||||||||| Sbjct 55247 CCCAGCAAAGATCAACCTCTGCTGATCCGGGGGAATTCCCTCCTTGTCCTGAATCTTTGC 55188 Query 81752 TTTTATATTTTCAATCGTAT 81771 ||||| ||| |||||||||| Sbjct 55187 TTTTACATTGTCAATCGTAT 55168 >seq481 Length=542854 Score = 87.8 bits (96), Expect = 3e-12 Identities = 102/140 (73%), Gaps = 11/140 (8%) Strand=Plus/Minus Query 81643 CAGAGTAAATTCCTTCTGTATATTATAATCAGATAGAGTTCTACAGTCTTCTAAC----- 81697 ||||||| | |||||||| ||||| || |||| ||| |||| || ||| || ||| Sbjct 259046 CAGAGTAGACTCCTTCTGGATATTGTAGTCAGCTAGGGTTCGACCGTCCTCCAACTGCTT 258987 Query 81698 ------AAAGATTAGTCTTTGTTGACCTGGAAGTATTTCTTCCTTATCTTGAATCTTTGC 81751 |||||| | || || ||| | || | ||| | ||||| || ||||||||||| Sbjct 258986 CCCAGCAAAGATCAACCTCTGCTGATCCGGGGGAATTCCCTCCTTGTCCTGAATCTTTGC 258927 Query 81752 TTTTATATTTTCAATCGTAT 81771 ||||| ||| |||||||||| Sbjct 258926 TTTTACATTGTCAATCGTAT 258907 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 903075232667360