Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Gossypium_20barbadense_20[genbank_20GCA_5F001856525.1_202016-11-03] 29,751 sequences; 2,566,742,836 total letters Query= NC_024697.1 Length=370920 Score E Sequences producing significant alignments: (Bits) Value seq23373 96.9 8e-15 seq12882 96.9 8e-15 seq769 96.9 8e-15 seq4768 84.2 5e-11 seq3223 84.2 5e-11 >seq23373 Length=148749 Score = 96.9 bits (106), Expect = 8e-15 Identities = 133/184 (72%), Gaps = 4/184 (2%) Strand=Plus/Plus Query 305307 GACATTTGAATGACAATGATTGGGTTCTGTTCAATAGGCAACCATCACTGCATAAAATGT 305366 ||||||| ||||| |||| ||||| || ||| | ||||| || |||||||||| Sbjct 115067 GACATTTAAATGATGGAGATTATGTTCTTTTTAATCGTCAACCTAGTCTCCATAAAATGT 115126 Query 305367 CTATGATGGCTCATAAAGTCAAAGTATTAT--CTGGATTGACATTTCGATTAAATGTAAG 305424 | || |||| |||| | || | ||||| | | |||||||| ||||| | Sbjct 115127 CAATCATGGGCCATAGAATCCGA--ATTATGCCATACTCTACATTTCGTCTAAATTTGTC 115184 Query 305425 TGCTTGTACGCCTTATAATGCGGATTTTGATGGAGATGAAATGAATATGCATGTACCTCA 305484 || | | | || || ||||| |||||||| || |||||||||||||||||||| ||||| Sbjct 115185 TGTTACTTCACCATACAATGCTGATTTTGACGGTGATGAAATGAATATGCATGTTCCTCA 115244 Query 305485 ATCA 305488 |||| Sbjct 115245 ATCA 115248 >seq12882 Length=211119 Score = 96.9 bits (106), Expect = 8e-15 Identities = 199/294 (68%), Gaps = 4/294 (1%) Strand=Plus/Plus Query 279806 GAATTTATTGATAAAGAACTGATCCATTTTTCTAATTATGATGTTCATCGTTCTATTCCT 279865 || || ||| |||| ||||| || | ||||| | |||| |||| | || |||||| Sbjct 191009 GACTTCATTAATAAGGAACTTATTCTGTTTTCCATGGCTGATCTTCAAAGATCAATTCCT 191068 Query 279866 CATTTAATGGATGGTTTGAAACCTTCACAGCGTAAGATTATATTCAGTTGTTTCAAAAGA 279925 | | ||||| |||| ||| || || ||||| | ||| || |||||| || Sbjct 191069 TCCATGGTTGATGGCCTGAAGCCTGGTCAACGGAAGATCCTTTTCTGTGCTTTCAAGAGG 191128 Query 279926 AAATTGGTAAAGGAAATTCGTGTTGCTCAGTTAGCAGGTTATGTTTCAGAACATGCAGGT 279985 || || ||| | || ||| |||| || | ||||||||||| || ||| | | | Sbjct 191129 AATTTTGTACATGAGGCAAAGGTTTCTCAATTTTCGGGTTATGTTTCGGAGCATTCTGCT 191188 Query 279986 TATCATCACGGTGA--AGCGTCTCTTCAAGGTGCTATTGTAGGTCTTGCCCAAGATTTTA 280043 || ||||| ||||| || |||| | | || | ||||| || | ||||| |||||| Sbjct 191189 TACCATCATGGTGAGCAGAGTCTTTGTA--GTACCATTGTTGGAATGGCCCAGGATTTTG 191246 Query 280044 TGGCTTCAAACAACTTAAATCTGCTTTCACCAAATGGTCAATTTGGTTCTCGTA 280097 ||| |||||| ||||||| ||| || |||||||||||| |||||| Sbjct 191247 TGGGCAGTAACAACATAAATCTTCTTCGTCCTGGGGGTCAATTTGGTACTCGTA 191300 >seq769 Length=114990 Score = 96.9 bits (106), Expect = 8e-15 Identities = 133/184 (72%), Gaps = 4/184 (2%) Strand=Plus/Plus Query 305307 GACATTTGAATGACAATGATTGGGTTCTGTTCAATAGGCAACCATCACTGCATAAAATGT 305366 ||||||| ||||| |||| ||||| || ||| | ||||| || |||||||||| Sbjct 34842 GACATTTAAATGATGGAGATTATGTTCTTTTTAATCGTCAACCCAGTCTCCATAAAATGT 34901 Query 305367 CTATGATGGCTCATAAAGTCAAAGTATTAT--CTGGATTGACATTTCGATTAAATGTAAG 305424 | || |||| |||| | || | ||||| | | || ||||| ||||| | Sbjct 34902 CAATCATGGGCCATAGAATCCGA--ATTATGCCATACTCTACGTTTCGCCTAAATTTGTC 34959 Query 305425 TGCTTGTACGCCTTATAATGCGGATTTTGATGGAGATGAAATGAATATGCATGTACCTCA 305484 || | | | || || ||||| ||||||||||| |||||||||||||||||||| ||||| Sbjct 34960 TGTTACTTCACCATACAATGCTGATTTTGATGGTGATGAAATGAATATGCATGTTCCTCA 35019 Query 305485 ATCA 305488 |||| Sbjct 35020 ATCA 35023 >seq4768 Length=592675 Score = 84.2 bits (92), Expect = 5e-11 Identities = 139/199 (70%), Gaps = 4/199 (2%) Strand=Plus/Plus Query 304937 CAGGCATCTCAAAGATCTGGCAGACCTTTAAAGGGTATTAGGCAACGCATTAAAGGTAAA 304996 ||||| | || |||||||| || ||| | || |||| | | |||| | ||| Sbjct 51464 CAGGCTACACAGAGATCTGGGAGGCCTATTAAATCTATTTGTAGTAGGCTTAAGGCGAAA 51523 Query 304997 GAGGGTCGTATTCGAGGTAATCTAATGGGAAAACGTGTTGATTTTAGTGCAAGAAGTGTA 305056 ||||| || ||| | |||||| | ||||| ||| | ||||| ||| || ||| ||| Sbjct 51524 GAGGGCCGGATTAGGGGTAATTTGATGGGGAAAAGGGTTGACTTTTCAGCTCGAACAGTA 51583 Query 305057 ATCACACCTGATTCTCAAATTAGTCTTCATGAATTAGGAGTTCCAATTGAA--ATTGCTT 305114 || ||||| ||| | | || | | || ||||| | ||||| || ||| | ||||||| Sbjct 51584 ATTACACCAGATCCAAATATCAATATTGATGAACTTGGAGTACC--TTGGAGTATTGCTT 51641 Query 305115 TAAAACTAACATTTCCAGA 305133 |||| || |||| |||||| Sbjct 51642 TAAATCTTACATATCCAGA 51660 >seq3223 Length=8379 Score = 84.2 bits (92), Expect = 5e-11 Identities = 196/294 (67%), Gaps = 4/294 (1%) Strand=Plus/Minus Query 279806 GAATTTATTGATAAAGAACTGATCCATTTTTCTAATTATGATGTTCATCGTTCTATTCCT 279865 || || ||| |||| ||||| || | ||||| | ||| |||| | || |||||| Sbjct 1498 GACTTCATTAATAAGGAACTTATTCTGTTTTCCATGGCTGACCTTCAAAGATCAATTCCT 1439 Query 279866 CATTTAATGGATGGTTTGAAACCTTCACAGCGTAAGATTATATTCAGTTGTTTCAAAAGA 279925 | | ||||| |||| ||| || | ||||| | ||| || |||||| || Sbjct 1438 TCCATGGTTGATGGCCTGAAGCCTGGTCAAAGGAAGATCCTTTTCTGTGCTTTCAAGAGG 1379 Query 279926 AAATTGGTAAAGGAAATTCGTGTTGCTCAGTTAGCAGGTTATGTTTCAGAACATGCAGGT 279985 || || ||| | || ||| |||| || | ||||||||||| || ||| | | | Sbjct 1378 AATTTTGTACATGAGGCAAAGGTTTCTCAATTTTCGGGTTATGTTTCGGAGCATTCTGCT 1319 Query 279986 TATCATCACGGTGA--AGCGTCTCTTCAAGGTGCTATTGTAGGTCTTGCCCAAGATTTTA 280043 || ||||| ||||| || |||| | | || | ||||| || | ||||| |||||| Sbjct 1318 TACCATCATGGTGAGCAGAGTCTTTGTA--GTACCATTGTTGGAATGGCCCAGGATTTTG 1261 Query 280044 TGGCTTCAAACAACTTAAATCTGCTTTCACCAAATGGTCAATTTGGTTCTCGTA 280097 ||| |||||| |||| || ||| || |||||||||||| |||||| Sbjct 1260 TGGGCAGTAACAACATAAACCTTCTTCGTCCTGGGGGTCAATTTGGTACTCGTA 1207 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1186360405133711